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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000005_pilon:2409402..2414448+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.1111.1.p1 ID=MSTRG.1111.1.p1|Name=MSTRG.1111.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5047bp|location=Sequence derived from alignment at sc0000005_pilon:2409402..2414448+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGAATGTTGGATAATTTTAGTTCAAAATtaagaattgattttaaaaaag
aaatatgaatCCAAAAGACAATGGGACGTCAGTGCTTTATAAAAGACCAC
ACTTGATGGCTGCAGCTACAGGAGCTGCACGAAAGAAACATCCAGTGAAA
GCTGTCCTTGCAGGTAAACATTCTTTGTCTGGGATTTTTGTTCCATTCAA
ATCCTGTTTGAATCCAATAGACAATACATATATGATTGCAAACATTCAAC
AAAATGATGAcctaatttaaaaatatttttaattattataAAAACGATTC
TACTACTAAGAATTTGCAAGCGAACTAGATTATCATGTTTGTTGTGATGG
CACTCCTCATTTGAGACATTCACTCAAGGTCATTGTTATTTTGAAACCTT
ATTATATTTGGTATAAATCAGCCTTGGTATCTTCCTTCAATTTTAAGGTG
GGATTGCTGGAGGTCTGGAAATATGCTGTACATTTCCAACAGAATATGTC
AAAACACAATTACAATTAGACTCGCGTGCTGAATTTCCAAAATACAAAGG
ACCATGGGACTGTGCACGAACTACAGTCAAAGAATTTGGATTCTTTGGAC
TCTATCGTGGGTTGAGTTCACTTTTATATGGATCGATACCCAAAGCTTCT
ATTAGGTAAATTTActttacagccaattaaagtTTTGCAGATCAATCCTT
CTTGTTGGTATATCTGCATATTCATACAGCCTTTTGTACATCGTAGAATT
GAGTAATCTAAGTGGTTACTAGAATAAAATTCTAATACTACAATTTGACC
TCCAAATATTTGCAAAACCACCGACTTTGAGCGCTTCAATTCGAAGGACT
ACATATTTTCGTTGAATTTCCCAAATAAAGATGAATTATTCTTTTAATCT
TTCAACTTTTCAGGTTTTCCATGTATGAATACTTGAGAAACCAAATGGCA
GACTCAAACGGCAAACTAACACAGGTTGGAAACCTAACCTGTGGTCTAGG
GGCAGGAGTTGCAGAAGCTATCCTGATTGTTTGTCCTATGGAGACggtga
aagtaaaatttatccacgACCAAACCCAAGCTAACCCAAAATACAGAGGA
TTCTTCCACGGCGTTTACACCATCGTCAAAACAGACGGTATGATTTTAAT
TATATAATAGCAAAATCAATATAACAAAAAGCTCACCTAGTAGTATTGTT
TCGCACCTTTTAGAATCGGGAGCAGCTACCGGTGGAATTTCTCAATACAT
CTGCTCAACAGCTTAGGGAAAAtgagaaacttttttcacagggggggtca
acatttataataccaacccatagcccaaaaacctgacttttgaccttttg
aactaagttaacaccaccaccccaaaattggtatcgataccaacttgaaa
atcataattttcagaaaaaggggggacccacccccttaatttggtatcga
taccaacatgactttttgaatttgacaaaatatcatgggacccaccccct
aatttagtactaataccaatctgacaaatttgagcttaaagctgtttaaa
ggggacccatacccctcccacacaaacagggtactaagagaaacttcaaa
aaaactcatttttgaaaactctttcttcaaaacaacacaaaaaatgtcat
atgttaaaatagaaaatgactgaaaactgacaatataataaaaacaaacc
caatggagctagcaaaatcaatctgaatcaatattatctgaatataataa
TTGATGTGCATAAACTAAGAGAAactattattagtacataataGATTCAt
tcattaccaaatgctatcacagaaaaaatgtttttgcttcaggcttgatc
aaaaataaaacttgagaatatcgaaaaagtccaaaataaacaaacttcaa
agtcatttatacttattactTATTTGCAGTCATTATACTccaaagctaaa
acaaatccaattgaaacctgtttagactgatatgtaccccggggtatttt
ctagctataagggcaaaaattaggaaagttttgctgtcattttgatatgg
ataccaactttctgaatcatattatttaaaaaaaggggtacccaccccct
attttggtatcaaaaccaactgaggataactcttttttctaaaaaaagag
gGACCCACCcctatcaataccaacttgacttttcagacttttaaaggaaa
aaaagacaccaccacccggctatgggtctggtatctggatgttgaccccc
ctgtttttcaatgaaaaatgctcttattaTCCTTCCCTTTATCAATGATC
TAGTTTAGTACAAACCTTGTCTAGAAAGTCTAATTTCATGGCTCTAGATT
GTAATACgagggttgaaaaaaaaattatataatctTTTTCGTCCTTAGGT
ATTCGTGGTACGTACCAAGGTTTaacggctaccattttgaaacaGGGTAG
TAACCAAGCCATtcgattttttgtttataacaaCATGAAGCTTTGGTTAC
AAGATGGGGACAACACAAAAGAAATAGGCATGGTTCGCACCTTTGCTATT
GGAGGATTAGCTGGAGCTGCCAGCGTGTTTGGTAATACACCAATCGATGT
TGTTAAAACTCGCATGCAGGTATATTCCTTTGCTGAATTCTCTATTAAAt
gttgttaaccggttactttttcgattcgggctacacggctttttgcgcaa
tgcaattggttcttttcgcatgacgacgggcctacactgtccagagttgc
ccgtcgttaagaaaattcattgcgacgtcactttttcaaaggaaaatgaa
caatgcaatgcgttgacatcatttctctcattttttatttctgacgtcag
aaattataccaattttttatctcttttcacttgttctttcgctttatttc
gctatttttttctGGATAAGCGCTAGAAATCAATCGAAACAATTAATATT
GACTTTTAATTTCGTGAAAAGTTTTAcctcattttcatcttcatttaaaa
agtgataattTTTACGCACTCTGGTCCATGAAATTTTTCGTTAGTTTGTC
CCACTAAAACGGTTGCAGTCCTTTTTTCACACTTATGGACAataaaaaaa
ggtgtcaaaaaggattggatcgagtttagggggataattaaataattaag
tggcacgcgcctggccgcgcggctacggtcgaaaaggtgtattgtgcCTT
TGAATAATTTAAAAGATGCTGAAGTTACACCAGTTACATAGTAACACGTT
CAACAGTTTTTCAACGTTGAATATTGctattgttttttctttataggGTT
TGGAAGCAAATAGATATAAGAACACATGGGATTGTGTGAAAAAGACATGG
GCTGAAGAAGGAGCACTAGCGTATGTTATTCTTTTAATATTGGATATAAA
CTAAAAAAGTGATTTCCCATTACATCTGGTGATTATCTTGGTCATTATTC
TTGAACATTGTAGACATTATATTTTAACCGAAAccattactttaatcgta
ggaattttagcgagactaattttagcgttttagcgagttttccctatttt
cgctaaaacaAATCTCGCTAAatcacgccgaatcgacaggttgctaaaat
ttatccacgcgaaatttctggttatattgccttgatacattttttatcaa
aagaaagggtttcagtgcaaagaaatgctagaaaacgaattaaatcaata
atgtaatacgagtattcgctaactaaatttatccacgcgaaatttcttga
aattgtgattcgctaaaataaatccaaaaaaaaatcaagattttaccgac
tcgctaatatacgctaaaattagtctcgctaaaatttctacgattaaagt
attcaaTGTAATGAGCTGCTgctgaaaaaattaaagattatTTTCCTTAT
TAACGTTAACATTCGATACTCTTGCCATATGTTCAAAATCCCCTTAATCA
CCACCATAAATTACCCTCACATTTTTAAGATTCAGTGTTTTTGACAAAGA
ATCACCCATCACACTCCTAATGGATTTCGTTCaggatcttttttttcttt
ttcagattttacaaAGGTACTATCCCGCGTCTGGGACGTGTATGTTTCGA
TGTTGCTTTCGTGTTCACGTTGTACGAACAAGTAATGAAATTATTAGACT
ATACATGGGACACTAACTAATGTTTAGCCTTTGTAAACAGACTGGTATga
acttttcaagtttttgctGGATTCtgtaagtgatttttttttaaattttg
tatcGTTTTCTTGAATCCTGTCATTATTCGTGGTATGGTGGTATAGTGGC
ATTCAGTGTTTCGTAACAGCTATCCAAAGGCTTTTCATTCTGCTGAGGTG
GCTATTAGGGAAACACATTTTTCTGTTTCCAAcaatttttatggtttttg
gCAGTTAGATGTGGATTTGAAATCTGTTTAATTCTGTGTCCGTTCAGTTC
GCTCATTTGTTcgttagtttttgttttttgttcgCTCGTTTGTTAATTTA
GCCCATGGCTGTATTTTtagatatgaaaaaaataatgaatgatTTTGTAA
TTGTAGATAGCTTTAGtttttttGTAGCCATGTTTCTATCATGAATTCTT
TTGTGAAAGTCACTTTCTCTCCATCTTGATGGCCCCTGAGTGATTTTCTA
TAATCGATTGatcaatttttcccaatttcagttgtgaaatattttttaca
caCGCATATACACACCCTTGAGATTTCAACAGAAAGAAAAGTTCTTCTCA
GATATTCATTAAAAGAGCTTGCATGTTTGGGAGGAGATTTCATCACTTTG
AAATCCTCTCACTGAGTTTGAACTGCGCTTTTAAATGATTATAGGGCAAA
TTCTAATagtgattttgaaaaaagaactaATTCTAAAGATGAAAATGTAT
TTTACATATATTTATTAGGTGAaagtttagaattttttttcttcagaata
tTTTTGTGATATTTGACTTCTAAAATTTTATGGCCTTCATTTTTAAAGgt
ctttcaatttttataacGAAAAGATATAAATTTCCAGCATTTCAAAA Coding sequence (CDS) from alignment at sc0000005_pilon:2409402..2414448+ >MSTRG.1111.1.p1 ID=MSTRG.1111.1.p1|Name=MSTRG.1111.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5706bp|location=Sequence derived from alignment at sc0000005_pilon:2409402..2414448+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaatCCAAAAGACAATGGGACGTCAGTGCTTTATAAAAGACCACACTT
GATGGCTGCAGCTACAGGAGCTGCACGAAAGAAACATCCAGTGAAAGCTG
TCCTTGCAGGTGGGATTGCTGGAGGTCTGGAAATATGCTGTACATTTCCA
ACAGAATATGTCAAAACACAATTACAATTAGACTCGCGTGCTGAATTTCC
AAAATACAAAGGACCATGGGACTGTGCACGAACTACAGTCAAAGAATTTG
GATTCTTTGGACTCTATCGTGGGTTGAGTTCACTTTTATATGGATCGATA
CCCAAAGCTTCTATTAGGTTTTCCATGTATGAATACTTGAGAAACCAAAT
GGCAGACTCAAACGGCAAACTAACACAGGTTGGAAACCTAACCTGTGGTC
TAGGGGCAGGAGTTGCAGAAGCTATCCTGATTGTTTGTCCTATGGAGACg
gtgaaagtaaaatttatccacgACCAAACCCAAGCTAACCCAAAATACAG
AGGATTCTTCCACGGCGTTTACACCATCGTCAAAACAGACGGTATTCGTG
GTACGTACCAAGGTTTaacggctaccattttgaaacaGGGTAGTAACCAA
GCCATtcgattttttgtttataacaaCATGAAGCTTTGGTTACAAGATGG
GGACAACACAAAAGAAATAGGCATGGTTCGCACCTTTGCTATTGGAGGAT
TAGCTGGAGCTGCCAGCGTGTTTGGTAATACACCAATCGATGTTGTTAAA
ACTCGCATGCAGgGTTTGGAAGCAAATAGATATAAGAACACATGGGATTG
TGTGAAAAAGACATGGGCTGAAGAAGGAGCACTAGCattttacaaAGGTA
CTATCCCGCGTCTGGGACGTGTATGTTTCGATGTTGCTTTCGTGTTCACG
TTGTACGAACAAGTAATGAAATTATTAGACTATACATGGGACACTAACTA
AatgaatCCAAAAGACAATGGGACGTCAGTGCTTTATAAAAGACCACACT
TGATGGCTGCAGCTACAGGAGCTGCACGAAAGAAACATCCAGTGAAAGCT
GTCCTTGCAGGTGGGATTGCTGGAGGTCTGGAAATATGCTGTACATTTCC
AACAGAATATGTCAAAACACAATTACAATTAGACTCGCGTGCTGAATTTC
CAAAATACAAAGGACCATGGGACTGTGCACGAACTACAGTCAAAGAATTT
GGATTCTTTGGACTCTATCGTGGGTTGAGTTCACTTTTATATGGATCGAT
ACCCAAAGCTTCTATTAGGTTTTCCATGTATGAATACTTGAGAAACCAAA
TGGCAGACTCAAACGGCAAACTAACACAGGTTGGAAACCTAACCTGTGGT
CTAGGGGCAGGAGTTGCAGAAGCTATCCTGATTGTTTGTCCTATGGAGAC
ggtgaaagtaaaatttatccacgACCAAACCCAAGCTAACCCAAAATACA
GAGGATTCTTCCACGGCGTTTACACCATCGTCAAAACAGACGGTATTCGT
GGTACGTACCAAGGTTTaacggctaccattttgaaacaGGGTAGTAACCA
AGCCATtcgattttttgtttataacaaCATGAAGCTTTGGTTACAAGATG
GGGACAACACAAAAGAAATAGGCATGGTTCGCACCTTTGCTATTGGAGGA
TTAGCTGGAGCTGCCAGCGTGTTTGGTAATACACCAATCGATGTTGTTAA
AACTCGCATGCAGgGTTTGGAAGCAAATAGATATAAGAACACATGGGATT
GTGTGAAAAAGACATGGGCTGAAGAAGGAGCACTAGCattttacaaAGGT
ACTATCCCGCGTCTGGGACGTGTATGTTTCGATGTTGCTTTCGTGTTCAC
GTTGTACGAACAAGTAATGAAATTATTAGACTATACATGGGACACTAACT
AAatgaatCCAAAAGACAATGGGACGTCAGTGCTTTATAAAAGACCACAC
TTGATGGCTGCAGCTACAGGAGCTGCACGAAAGAAACATCCAGTGAAAGC
TGTCCTTGCAGGTGGGATTGCTGGAGGTCTGGAAATATGCTGTACATTTC
CAACAGAATATGTCAAAACACAATTACAATTAGACTCGCGTGCTGAATTT
CCAAAATACAAAGGACCATGGGACTGTGCACGAACTACAGTCAAAGAATT
TGGATTCTTTGGACTCTATCGTGGGTTGAGTTCACTTTTATATGGATCGA
TACCCAAAGCTTCTATTAGGTTTTCCATGTATGAATACTTGAGAAACCAA
ATGGCAGACTCAAACGGCAAACTAACACAGGTTGGAAACCTAACCTGTGG
TCTAGGGGCAGGAGTTGCAGAAGCTATCCTGATTGTTTGTCCTATGGAGA
CggtgaaagtaaaatttatccacgACCAAACCCAAGCTAACCCAAAATAC
AGAGGATTCTTCCACGGCGTTTACACCATCGTCAAAACAGACGGTATTCG
TGGTACGTACCAAGGTTTaacggctaccattttgaaacaGGGTAGTAACC
AAGCCATtcgattttttgtttataacaaCATGAAGCTTTGGTTACAAGAT
GGGGACAACACAAAAGAAATAGGCATGGTTCGCACCTTTGCTATTGGAGG
ATTAGCTGGAGCTGCCAGCGTGTTTGGTAATACACCAATCGATGTTGTTA
AAACTCGCATGCAGgGTTTGGAAGCAAATAGATATAAGAACACATGGGAT
TGTGTGAAAAAGACATGGGCTGAAGAAGGAGCACTAGCattttacaaAGG
TACTATCCCGCGTCTGGGACGTGTATGTTTCGATGTTGCTTTCGTGTTCA
CGTTGTACGAACAAGTAATGAAATTATTAGACTATACATGGGACACTAAC
TAAatgaatCCAAAAGACAATGGGACGTCAGTGCTTTATAAAAGACCACA
CTTGATGGCTGCAGCTACAGGAGCTGCACGAAAGAAACATCCAGTGAAAG
CTGTCCTTGCAGGTGGGATTGCTGGAGGTCTGGAAATATGCTGTACATTT
CCAACAGAATATGTCAAAACACAATTACAATTAGACTCGCGTGCTGAATT
TCCAAAATACAAAGGACCATGGGACTGTGCACGAACTACAGTCAAAGAAT
TTGGATTCTTTGGACTCTATCGTGGGTTGAGTTCACTTTTATATGGATCG
ATACCCAAAGCTTCTATTAGGTTTTCCATGTATGAATACTTGAGAAACCA
AATGGCAGACTCAAACGGCAAACTAACACAGGTTGGAAACCTAACCTGTG
GTCTAGGGGCAGGAGTTGCAGAAGCTATCCTGATTGTTTGTCCTATGGAG
ACggtgaaagtaaaatttatccacgACCAAACCCAAGCTAACCCAAAATA
CAGAGGATTCTTCCACGGCGTTTACACCATCGTCAAAACAGACGGTATTC
GTGGTACGTACCAAGGTTTaacggctaccattttgaaacaGGGTAGTAAC
CAAGCCATtcgattttttgtttataacaaCATGAAGCTTTGGTTACAAGA
TGGGGACAACACAAAAGAAATAGGCATGGTTCGCACCTTTGCTATTGGAG
GATTAGCTGGAGCTGCCAGCGTGTTTGGTAATACACCAATCGATGTTGTT
AAAACTCGCATGCAGgGTTTGGAAGCAAATAGATATAAGAACACATGGGA
TTGTGTGAAAAAGACATGGGCTGAAGAAGGAGCACTAGCattttacaaAG
GTACTATCCCGCGTCTGGGACGTGTATGTTTCGATGTTGCTTTCGTGTTC
ACGTTGTACGAACAAGTAATGAAATTATTAGACTATACATGGGACACTAA
CTAAatgaatCCAAAAGACAATGGGACGTCAGTGCTTTATAAAAGACCAC
ACTTGATGGCTGCAGCTACAGGAGCTGCACGAAAGAAACATCCAGTGAAA
GCTGTCCTTGCAGGTGGGATTGCTGGAGGTCTGGAAATATGCTGTACATT
TCCAACAGAATATGTCAAAACACAATTACAATTAGACTCGCGTGCTGAAT
TTCCAAAATACAAAGGACCATGGGACTGTGCACGAACTACAGTCAAAGAA
TTTGGATTCTTTGGACTCTATCGTGGGTTGAGTTCACTTTTATATGGATC
GATACCCAAAGCTTCTATTAGGTTTTCCATGTATGAATACTTGAGAAACC
AAATGGCAGACTCAAACGGCAAACTAACACAGGTTGGAAACCTAACCTGT
GGTCTAGGGGCAGGAGTTGCAGAAGCTATCCTGATTGTTTGTCCTATGGA
GACggtgaaagtaaaatttatccacgACCAAACCCAAGCTAACCCAAAAT
ACAGAGGATTCTTCCACGGCGTTTACACCATCGTCAAAACAGACGGTATT
CGTGGTACGTACCAAGGTTTaacggctaccattttgaaacaGGGTAGTAA
CCAAGCCATtcgattttttgtttataacaaCATGAAGCTTTGGTTACAAG
ATGGGGACAACACAAAAGAAATAGGCATGGTTCGCACCTTTGCTATTGGA
GGATTAGCTGGAGCTGCCAGCGTGTTTGGTAATACACCAATCGATGTTGT
TAAAACTCGCATGCAGgGTTTGGAAGCAAATAGATATAAGAACACATGGG
ATTGTGTGAAAAAGACATGGGCTGAAGAAGGAGCACTAGCattttacaaA
GGTACTATCCCGCGTCTGGGACGTGTATGTTTCGATGTTGCTTTCGTGTT
CACGTTGTACGAACAAGTAATGAAATTATTAGACTATACATGGGACACTA
ACTAAatgaatCCAAAAGACAATGGGACGTCAGTGCTTTATAAAAGACCA
CACTTGATGGCTGCAGCTACAGGAGCTGCACGAAAGAAACATCCAGTGAA
AGCTGTCCTTGCAGGTGGGATTGCTGGAGGTCTGGAAATATGCTGTACAT
TTCCAACAGAATATGTCAAAACACAATTACAATTAGACTCGCGTGCTGAA
TTTCCAAAATACAAAGGACCATGGGACTGTGCACGAACTACAGTCAAAGA
ATTTGGATTCTTTGGACTCTATCGTGGGTTGAGTTCACTTTTATATGGAT
CGATACCCAAAGCTTCTATTAGGTTTTCCATGTATGAATACTTGAGAAAC
CAAATGGCAGACTCAAACGGCAAACTAACACAGGTTGGAAACCTAACCTG
TGGTCTAGGGGCAGGAGTTGCAGAAGCTATCCTGATTGTTTGTCCTATGG
AGACggtgaaagtaaaatttatccacgACCAAACCCAAGCTAACCCAAAA
TACAGAGGATTCTTCCACGGCGTTTACACCATCGTCAAAACAGACGGTAT
TCGTGGTACGTACCAAGGTTTaacggctaccattttgaaacaGGGTAGTA
ACCAAGCCATtcgattttttgtttataacaaCATGAAGCTTTGGTTACAA
GATGGGGACAACACAAAAGAAATAGGCATGGTTCGCACCTTTGCTATTGG
AGGATTAGCTGGAGCTGCCAGCGTGTTTGGTAATACACCAATCGATGTTG
TTAAAACTCGCATGCAGgGTTTGGAAGCAAATAGATATAAGAACACATGG
GATTGTGTGAAAAAGACATGGGCTGAAGAAGGAGCACTAGCattttacaa
AGGTACTATCCCGCGTCTGGGACGTGTATGTTTCGATGTTGCTTTCGTGT
TCACGTTGTACGAACAAGTAATGAAATTATTAGACTATACATGGGACACT
AACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005_pilon | genome | sc0000005_pilon:2409402..2414448 + |
|
