MSTRG.11041.3.p1 (mRNA) -

Overview
NameMSTRG.11041.3.p1
Unique NameMSTRG.11041.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000079_pilon:36281..43363+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11041.3.p1 ID=MSTRG.11041.3.p1|Name=MSTRG.11041.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7083bp|location=Sequence derived from alignment at sc0000079_pilon:36281..43363+ (Clytia hemisphaerica_ch_hm2_pilon)
TTAAGAGAAATCTTGTAGTagcttttgttgattttttgaaatcagaAATT
CAAAGTGGCCAACTTGGAGAAGATGCAGCAGAAGGATTAGAAGGTATCTA
CATTCCTTTTGGAATTATCTTAGATTCTATAACCAGGAAACAAGAGAGTC
ATAAAATGGAACTTATGGAATGTGTGGAAATGTGGTGTGAATAAATGTAG
AAAGGCCAGTCAACTAACTTTATAATGTTCCctataaaatataaacatta
aGATATGTTAACAGAATGGCTACtcattttctttcgaaagacCAGCGACC
AGCATTATCATGCAGGGAAAGATATGTTTATTAAAGACCTTTAATACACC
TTAGATGGCCATCAAAATATCATAATATAGTTAATTTCGATGctgcaaaa
atatttattacaaTATATCAAATATCAAAGAGTAGAGCTTATTAATTGAC
TGTTCAAATATTGGACGTCAGTTGAtttagattgtttttttttttattaa
aaaatttttagttGCTATGCAATGTTTGGAGAGCGCTTACAGTATTGAAG
GTATTACACCACCACATGGCACGAATTTGCTCAATATTTATCAAGAAAAT
TGTTCGCCAGCTCCTCAAACCAATAAGGTACTGAAGTTGACTATAAATTA
AGATATTCAAGTGTGATTTTCTTTGCAATTGTCCcatacttgaaattttt
ttttgtactcaatgttttagcttgaaattaataaaaagaattgaagaatg
TTAATATCATTGTCATTTAATTTCATTGTCATTTGATTTGACAATTATTT
GGATTTGCACGTCAAGTATGACTGGTTGGTTCTCACTACTTTTTTGTGAC
ATTTGGTaactaaaaaaatgaaagatcATCATATATAATACATTTTACGC
AATAAAGTAAGCAAAATTGATGTAACAAATGTAcgtctttttatttaaaa
aataaacaaagcatATCATGGAGCTCGATATTCTTTGTTTAATTCTAGGG
ACcatctgaagaagaaaaaaggttagctgaagaagaaaaactgaGAGGTA
ATCTTATTATCATAGAATAAATTTCCTGGTTTGCTCCACAAAAGCTGTtg
taaaacactagatagatcttctattttttatataagatatctgtggtttc
CCTGGACCGACATTTAGCAAATTCTGCTGGCTTTATTAGGCTGAAAATgc
aagttttacttttttacagGAAATGGTTTAATGAAAGAAGCAAATTATTC
TGGGGCTGTTGATTGCTATACAAAGGCCATCAAACTCGACAGTAGAAATG
CAATATATTACTGCAACAGGTTTGGACTGCAAATTTCTCTTTTGAATTCC
AATAAGCAATAATAAAAAGCTCCAGTTGAAGTTGGGTCGACAAGAGAAAG
AAGGAGTGCAATATTTGAAATTATAGTGCTCAAAGTATaccaataaaaat
aacaaataacTAAAATTGTTTCACGTTATTTGAATATAGTAATGTATACC
AACACCATTCTGGTTTTTCTTAGTGCCAAAAGTGCTCGATGATATGACAG
AGATGTTTAAGTTATTAAGAATGAGGCTTTTAGATTTTGTAGTAAGTATA
TATAGTCATAGTTTCATGCTGTATAAAATGTTGTGTGTAATTTGGATGTA
TGTAACTAGGGTTTGGTTTATAAGTATTTTATCTTCAATTTTCTAGAGGA
GCTGCATATACAAAATTAGAGAAACATACACAAGCAGTAGATGATTGCAA
AGAAGCGATACGAATAGACCCTTCCTATGGGAAAGCTTATGGTAGAATGG
GGTATGTCATGATGTTAATACATAATAGttctttaatttattttagtCTC
AGGTCAACTATATTTGAAAtgcttttgtctcttttgatGACAAACAATAA
AACGTGTTGCCTGCAGGTGCATTCAAAGCTTTACCTAAAGTTTCAAGACT
TAAACTCTTGTCGTAGCAAGTCCTCTATCTTATTAAGTTATACTGCATAC
CTCAGATTTTAAAGGAGTCTTTGGTTTTACCCAAACCTCCCTGAAGACAT
TTTTATCTAAATGTGACAGGGGCAAAACTCCAGGGCAAAGTTccaggggg
gagggggggggggtttcagggggcaAGTTGTCTCTGTCTCTTATTTTTCA
CTTATTCATAACAATTCATATGTTTTATAACTTCCCATTCATCCTTTGTC
TTTTCGTCTCACTCTTGGAGTTTCATTATGTTAccaactttaattttttt
tccaggttAGCACATCTTGCAAATAAAGAGTATCAAAAATCAATAGATAG
CTATGAACATGTAAGGGTTACagttaagagccattttttttaagagtctt
cagggtgtgatacctcaccctcttggattttgctgaaatttagaccaaat
gatctatcacacaagaaaataagaccctgaaaatttcaccttgatatctc
aagtagttttgaagatacagcgtctcaaagataggctactaagcgaaaat
tgacccctaaaaatcatgaactctggtggggagcagattttgaaagccaa
tgaatttttattcaagtacattagaaagctgatttacagtggatttcaag
aactttttgtagggaatcagaaaaaatcaaattgagtttccaaaattttc
cccgaaaatctctagcacctcctgtagagggcttcaaactttgcgtaatc
tggcacttttagctggctgctgatggtccttgggacttttttgaagtaaa
cttttgacctggtgggttttggccacaaaaataacattttcaggatttcc
atctttgcgtaaccataaaaaatggccgaaaaaattgctattttggcaga
cctggagcaaaattcaagatggcgtatctttttaaggcaacaccaatttt
ttttgaaattttcagcaaggcttccttagtaggtctagtttatagcctca
aaaaaatctcaatgggcttttgaagtctcttaaagatatgatcgattgaa
aatttgcttaacttcgttgttttctcgctcttaaaatgctaaatcaggcc
cacttaagggctctaacaggataattttgtcaaaatattggttgatcttc
tctagccaactaatcattggcattagaggaacaactgaaaaagatttcag
gttatttccatcaacagatgacattttatgacagtttctttatttttaag
tacagaatatgtaaaaaaatgacacTGACATCTGGcgtttcctaccattc
cagggcctatatttccagaaaaaaactcaacctttcacagtttggtgaat
attaatcttaaatataagcaggttacttcaacttaatgggtttaacagta
ctcaattcctattcaaaaactttttagactcattcagaaatcctactttg
acaataatttgcgctttaccgcaaaattttcatgattagctttagactgt
ccaatatctctataaTAGTGTACACTAACAGtcttacttgttgattctta
aataactaagcaacattactagggtgataatttatgagatactgcaaaca
atgctgtttaaatcttctggacaagaaatattggatagtctaaagctaat
cacaacacttggacttagaaattttgcggtaaagcgcaaattattgtcaa
agtaggatttctgaatgagtctaaaaagtttttgaataggtcttattttc
ttgtgtgatagatcatttggtcaaaatttcatcaaaatctaagagggtga
ggtatcattctttattctgaagatttttaaaaaaaatggctcttaaaatt
ttaattctcattttacatAGTAGCGTAGAGTGATTATCTACTTACCCATG
CTGGAGGCTGAGGTTTGATTACCACGAAGACACAAAATGAGTTTTCCTTT
GCAAATCTTTTCTTCTACTTTCAATAAACAGTGTTACCAGTTTCAATCAC
ACTAAGAAATACAGGGATAAAATGCCAGCACTATGATGTACTCGTTTGAT
GTACAAGCAGTATTTGTCAAGGTCGACCATACAatacaatttattttttt
cgtgcGTCGTTAAGTACAGTTAAGTTGGCGCCAAGCAAAAGTTTGAAGCA
GAGTTTGACAATAATTATCCTAACCTAAGATAATAAAAAGATACTGTGTT
TGGAATTGGGATTCTTCTATTTATTGAATAGCTTTCATCTCATCTCAACT
TGTTAATCATATTAtcatattcttttttttcttttaggcaCTAACTCTCG
AACCAGAAAATGCATCATACAAAACTAATTTGAATTTAGCGAAAGATCAA
TTAAAAAGCCAACAGCCCTCACAACCAAGTAAATTTTTCGTTATTGCTTT
cttttagcttcttttcaacGGTGTATAAATTTCTACTGTAGTAAAAAAGG
ACGTtaagaaattgttaaaaaagtaaAGTTTCCACCTTAGTTTCCACCTA
CtttttagagttttttgagagtttttttgaGAGCAACCTATGATGTAGTC
AATGATAAAATAATGAGGAGTACAACTAGTCAAAACATATGtgaaaacat
ataaaaatacttttgcctcggaaaaaatattttcttttaagtaATCCGTA
GGGGAAACTGTCAATGTCCAAAGATAGCTTAAATAGACCTACCTTacagg
gctgtaacttttgatctaagaaatctgggatgagctggagtttttacaag
atacttcactaattggtcatttaaagtgatagagatgactcgttctttag
aaaaagtaataagattcttttattacatcttaacgaaccaaccaaatcaa
ataagagcttgtaaaaacttcatcttGTCCCAGAAATCTGAGCACACTTT
TGAAATCAGCAATTCTCAAATATTCTTGTGTcatgtcataacttttgaac
caggagaaattttttttgaagatttaataTGAGGAAtatgattatttgaa
aatataagTCAGACCATAAACCCTCCTAAACTAAAAGTTATTTAAGccaa
attatttattttcagcACAAAGTAATCCACTGGCTGGACTGGATATCAAC
TCATTACTATCAAATCCAGCTGTTATGAACATGGCACAAAATTTCATGAC
AAACCCAGCCATGCAGAACATGTAAGCTTTTATTTTACAGACTTCTTATA
ATCAACATTTTGAAGAGCTTCCATTATTTGAAACTCTTTAAAACCATTAA
ATAACATAATGTACATCTTAATTTATAAAATGATCCtccaatatttcttt
ttgataaatgtATGGGTATATACTGCAGCAGTTAAAAAGCATGCAAAGTT
TCATTATTCTGTGAGTGTAAATACCCTATAATACAGGTATTTACAATGCC
TGTCAAATCTTCTTAATTTTGTATTTCAACCAGGTTTTCAAGCATGATGG
GTGGTATGGGCGGTGGTATGCCGGGAATGCCAGGTATGCCGGGAATGCCA
GGAGCTGGAAGTCTAccagaagaagatgaagaaactttaacaaatgaccg
ACAGCCCACAGAAGGACCAGCTCCACCAGAAGGAGATCCTGTAGCTGGAA
TGCCTGGTGGCTTTCCAGGAAACTTCCAAATGCCAGCTGGATTGGACTTT
GGCAATCTCATGAATGCGTATGTTATTTACTCTTGATTAAGATGTAATCT
TGATTTGattctaaagaaaaaatcacgaaataggtttgcttgaaaattat
ttacaaatttttttaaacgtttAAAAATTGCTTGGTACATAATTCTTACA
AAGTCCAATATAGCAtcattcaatttttcgtttCTTTAGTTCCCAACAAG
TTGCTGCCCAGTTAAGAGAGCAAAATCCAGAATTAGCTGAGTCACTTCGC
GAACAGTTTCAACAAGGACAAGACCAAGATCCAAAGAATCCCCCTCCTTC
tgatgaaaataatcaaaaataaaattaaataaaatctttatataatgaaa
ttattgaaattgaaaatgtctTTCAAATGGTGACAGTTTGACAAATGAGA
CGAAGGAAACCTTTAAAATGGTGCATACCAGAGTTTCTTCTTTAATGAAG
ACCCGATTCTCACTGCACGGTCAAGTTTACTGTTGGTGGCTGATGGTGAT
GTTTTACATCAAATCCCTAGCGGTAGTTTAGTAAATAACCGTTCAATttc
aagatcatctttcaaaaaagaaatacatAATGATACAATCTTTATCGGTA
TAGGCAGGGGATATCTAAACGATATGCCAATTTTTAGTTTCTTAACTCTT
TCAAAATGCTCTGATTGCAATATTGCTCGAATTTCTTCCTCAGGTTTCTT
AGCTGAgctgaaacttttttcaaatcaacCTAACCCATGTGTCATAATAT
TAACTTCCTTATAAGTGAAATCATAGTCCGTATATAGAACCCTgctctgg
aagccttttgtttctttccattgtttcttacttgaacttgtgttgagaaa
aatagtttgatcatgtgattaaatcttaaaccaatcccaagaggagtact
tggtaacgtgatcaaaaactgagcaaatcgattttaccttttgatattaa
caaaggaaaagctaacaaaaagttaaaacaataagcttccagaccagtgt
tttttataaggactatggCGAAATTTAGTTTGTAGaatgtatatttttta
tttcagttacATTTATATAGAATTATTTAGGCACCTGTTTTCTAGATGca
aatatttttcatcattCTGGCTGCTTACTTTGGATGCCCACTTTGGCGTT
TGGCAAGTCATTCTAAATAGATgcggaaaattctttttaatctGTTCTTT
CACCGGTCGTGacttttatcatttatcatttttattttcctgAGAAccct
ttaaattattttaaggtGCGTTTGAACACGACTTACTTGCATAAGGAATC
ATCTCTTCAGAGttgagtttttcttttataatggCGGAGTCATTTAACTT
AGccaaaccttgaaaacctttaTGCTATATAAATGAATTGAACTTAAGAT
TTTATTCAAAGCAGAGCTTATAAAATCTCACAATGTCATATTAGGTTGTA
TGAACGTAGTAATAGGGTCTAGTAGTGACAGTT

Coding sequence (CDS) from alignment at sc0000079_pilon:36281..43363+

>MSTRG.11041.3.p1 ID=MSTRG.11041.3.p1|Name=MSTRG.11041.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3006bp|location=Sequence derived from alignment at sc0000079_pilon:36281..43363+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGAGAAATCTTGTAGTagcttttgttgattttttgaaatcagaAATTCA
AAGTGGCCAACTTGGAGAAGATGCAGCAGAAGGATTAGAAGttGCTATGC
AATGTTTGGAGAGCGCTTACAGTATTGAAGGTATTACACCACCACATGGC
ACGAATTTGCTCAATATTTATCAAGAAAATTGTTCGCCAGCTCCTCAAAC
CAATAAGGGACcatctgaagaagaaaaaaggttagctgaagaagaaaaac
tgaGAGGAAATGGTTTAATGAAAGAAGCAAATTATTCTGGGGCTGTTGAT
TGCTATACAAAGGCCATCAAACTCGACAGTAGAAATGCAATATATTACTG
CAACAGAGGAGCTGCATATACAAAATTAGAGAAACATACACAAGCAGTAG
ATGATTGCAAAGAAGCGATACGAATAGACCCTTCCTATGGGAAAGCTTAT
GGTAGAATGGGGTATCACATCTTGCAAATAAAGAGTATCAAAAATCAATA
GAAGAGAAATCTTGTAGTagcttttgttgattttttgaaatcagaAATTC
AAAGTGGCCAACTTGGAGAAGATGCAGCAGAAGGATTAGAAGttGCTATG
CAATGTTTGGAGAGCGCTTACAGTATTGAAGGTATTACACCACCACATGG
CACGAATTTGCTCAATATTTATCAAGAAAATTGTTCGCCAGCTCCTCAAA
CCAATAAGGGACcatctgaagaagaaaaaaggttagctgaagaagaaaaa
ctgaGAGGAAATGGTTTAATGAAAGAAGCAAATTATTCTGGGGCTGTTGA
TTGCTATACAAAGGCCATCAAACTCGACAGTAGAAATGCAATATATTACT
GCAACAGAGGAGCTGCATATACAAAATTAGAGAAACATACACAAGCAGTA
GATGATTGCAAAGAAGCGATACGAATAGACCCTTCCTATGGGAAAGCTTA
TGGTAGAATGGGGTATCACATCTTGCAAATAAAGAGTATCAAAAATCAAT
AGAAGAGAAATCTTGTAGTagcttttgttgattttttgaaatcagaAATT
CAAAGTGGCCAACTTGGAGAAGATGCAGCAGAAGGATTAGAAGttGCTAT
GCAATGTTTGGAGAGCGCTTACAGTATTGAAGGTATTACACCACCACATG
GCACGAATTTGCTCAATATTTATCAAGAAAATTGTTCGCCAGCTCCTCAA
ACCAATAAGGGACcatctgaagaagaaaaaaggttagctgaagaagaaaa
actgaGAGGAAATGGTTTAATGAAAGAAGCAAATTATTCTGGGGCTGTTG
ATTGCTATACAAAGGCCATCAAACTCGACAGTAGAAATGCAATATATTAC
TGCAACAGAGGAGCTGCATATACAAAATTAGAGAAACATACACAAGCAGT
AGATGATTGCAAAGAAGCGATACGAATAGACCCTTCCTATGGGAAAGCTT
ATGGTAGAATGGGGTATCACATCTTGCAAATAAAGAGTATCAAAAATCAA
TAGAAGAGAAATCTTGTAGTagcttttgttgattttttgaaatcagaAAT
TCAAAGTGGCCAACTTGGAGAAGATGCAGCAGAAGGATTAGAAGttGCTA
TGCAATGTTTGGAGAGCGCTTACAGTATTGAAGGTATTACACCACCACAT
GGCACGAATTTGCTCAATATTTATCAAGAAAATTGTTCGCCAGCTCCTCA
AACCAATAAGGGACcatctgaagaagaaaaaaggttagctgaagaagaaa
aactgaGAGGAAATGGTTTAATGAAAGAAGCAAATTATTCTGGGGCTGTT
GATTGCTATACAAAGGCCATCAAACTCGACAGTAGAAATGCAATATATTA
CTGCAACAGAGGAGCTGCATATACAAAATTAGAGAAACATACACAAGCAG
TAGATGATTGCAAAGAAGCGATACGAATAGACCCTTCCTATGGGAAAGCT
TATGGTAGAATGGGGTATCACATCTTGCAAATAAAGAGTATCAAAAATCA
ATAGAAGAGAAATCTTGTAGTagcttttgttgattttttgaaatcagaAA
TTCAAAGTGGCCAACTTGGAGAAGATGCAGCAGAAGGATTAGAAGttGCT
ATGCAATGTTTGGAGAGCGCTTACAGTATTGAAGGTATTACACCACCACA
TGGCACGAATTTGCTCAATATTTATCAAGAAAATTGTTCGCCAGCTCCTC
AAACCAATAAGGGACcatctgaagaagaaaaaaggttagctgaagaagaa
aaactgaGAGGAAATGGTTTAATGAAAGAAGCAAATTATTCTGGGGCTGT
TGATTGCTATACAAAGGCCATCAAACTCGACAGTAGAAATGCAATATATT
ACTGCAACAGAGGAGCTGCATATACAAAATTAGAGAAACATACACAAGCA
GTAGATGATTGCAAAGAAGCGATACGAATAGACCCTTCCTATGGGAAAGC
TTATGGTAGAATGGGGTATCACATCTTGCAAATAAAGAGTATCAAAAATC
AATAGAAGAGAAATCTTGTAGTagcttttgttgattttttgaaatcagaA
ATTCAAAGTGGCCAACTTGGAGAAGATGCAGCAGAAGGATTAGAAGttGC
TATGCAATGTTTGGAGAGCGCTTACAGTATTGAAGGTATTACACCACCAC
ATGGCACGAATTTGCTCAATATTTATCAAGAAAATTGTTCGCCAGCTCCT
CAAACCAATAAGGGACcatctgaagaagaaaaaaggttagctgaagaaga
aaaactgaGAGGAAATGGTTTAATGAAAGAAGCAAATTATTCTGGGGCTG
TTGATTGCTATACAAAGGCCATCAAACTCGACAGTAGAAATGCAATATAT
TACTGCAACAGAGGAGCTGCATATACAAAATTAGAGAAACATACACAAGC
AGTAGATGATTGCAAAGAAGCGATACGAATAGACCCTTCCTATGGGAAAG
CTTATGGTAGAATGGGGTATCACATCTTGCAAATAAAGAGTATCAAAAAT
CAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11041MSTRG.11041Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11041.3.p1.exon1MSTRG.11041.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11041.3.p1.exon2MSTRG.11041.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11041.3.p1.exon3MSTRG.11041.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11041.3.p1.exon4MSTRG.11041.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11041.3.p1.exon5MSTRG.11041.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11041.3.p1.exon6MSTRG.11041.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11041.3.p1.exon7MSTRG.11041.3.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11041.3.p1.exon8MSTRG.11041.3.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11041.3.p1.exon9MSTRG.11041.3.p1.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11041.3.p1.exon10MSTRG.11041.3.p1.exon10Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11041.3.p1.exon11MSTRG.11041.3.p1.exon11Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11041.3.p1MSTRG.11041.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079_pilongenomesc0000079_pilon:36281..43363 +