MSTRG.11038.1.p1 (mRNA) -

Overview
NameMSTRG.11038.1.p1
Unique NameMSTRG.11038.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:1451835..1460992-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11038.1.p1 ID=MSTRG.11038.1.p1|Name=MSTRG.11038.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9158bp|location=Sequence derived from alignment at sc0000078_pilon:1451835..1460992- (Clytia hemisphaerica_ch_hm2_pilon)
CACCTTACTCCAGCCATTTTAATATATGATCATGTTTTCTCTTGCAGGTA ACATATAAAAGACATTTGAATAAAAAAATAGACAAAACTTTATTTCAATG CTGGTTCTTAATGGATAGAGATTGATCATATTTTTCTTTTTTATGAGAAT TTGATATTGTGGTGCAGTGAGACAGAAAGTTAATTTTCAAGATGAGCAGT AGAAAAGAATCATCATGCACCAACCAAAACACGTTAACAACATCTATTGC CAAGATAGGGTCTGCTGTCAACAGTCCTCGAAATCGATTATTTCAGATTC GGCAACAACAAACACCAGTTTCCAGTAGCTCATCTATATACAATCCACCT CAAAGACGTGTGGTGAACTTAGATACTTGGCCAAACAATGCTGGTAGCTT TGACAATAATAATGCCGCTATGGCTCAAATGTATAGCAGCAGATGGGGTG TATATGATAATACCACATTCAATATCGGTTACAATGATGGAGGATTCTCA AAACTACCACCACTGAATATGAATGGTATTGATAATAATAGTATGGACAA TCTAGACCATAATCAATTCTCACCTAAACACACCATGATGAACAACAGCC CTAATATGAGTCCCAACAACTATATGCAACAAAATATGAACAATAATCCA TTTACAACGGTACAGACTTCCAATAGTAACACGTTGAATGATAGTCTATT TCACCAGAATCAACAACAACAGCAAAATCTGAACACTCATAACAATCAGC AGCAAAATCATCAGATAAGCGTTACAATGCAAAATTCGAACTTTCATCAC ACCAATAACCAAATAAATAACACAACCACAAACTTTCAAACACAGCACTC CCAACAACCTTGTATAGATCTAAATACAACGAGTTTTAACCCACAACACA CGATAGAACAACAAAATAACACGAACACTTTATTCCAGCAAAGCCAACAG ACCCAGCATAATGTGGATCATCGACAGACTATAAATAGTGTAAATAACAC AAGCAATTTTCAACAACAGAACATTTTTAACCAATTCGATCAACAGCAAA CTGAAATAAACTCTGCAATTCCTCAATCCTTAGTTGATATTGTTATGGAA ATGGAAGAAGAAACTCCCGAACAAACATTTGAGCAGATGCTGACAGACCA TAACAAAAATATTCAAAATACTTGTAGCTATGGAAACTCTCCAGTCCCAG AGACTTTCAACGATGATTCCATGATGGATATAAGTGATATGAATGACATT TTTACCAATATTCCATCAATAAGGCCACCTTCTACGTGGAATTTCGATAT TGTTGAACAAAACAATAAAATGAATATAGAAAACTTTGGATCGTCTACTT CACAATTGATTAACGAACTTAAAAAAGAGAATCTGAAAGCAGAGCCAGCG GTGTCTATAAACTCGCTATCAACAACATCAATGATAACAGAGCAAATTCA CAAAACTTTCAACAAACTTTTGAAAACACTCAGCAGACATTGCAAAATCA ACAAGATATGAAAAATTCACAATTACAACAAACTTTACATAGTGAGCAAA TCTTTCAACAAAATAGACAAAATCATCAACCATTTGTACAACAAAGTCAC CAACCAAATCAGCAACATGCCTTTCAAGAGCAGAACTCGGAACTAAGTCA AAAACCTCAACAAACTCAACAAACTCAACAGACTCAGCAACAATTTTTGA ACCAACAAACTCAACAAACTCAAGAGAATTTACAACAAAACCAAAAAACA AAAGAACAACATCAAATCTTACAGCAAAATAAGCAAAATAATCAACAGAC CTCAACGCCACAACGACAAGAGCAACAAAAATATCAACAACAACAACAGC AGCAAAGTCAAAGGCAAGAAGAAGAGGAAGAGGAAGATATCCCAAGTGAA ATTTTTGACAAAAATGGCGAAACGTGAGTTTATCTTTTTTAACGTTTTTT AACACTAAGTTGAACAGGGGAATATTTATTCCCGAATGCTATTTATATTT TTTTTTGCCCTGGATATAATTTTATTTTTATCAAACAATGTTTTTTTAGG TTCCTACACTTGGCAATCCACAACAGAGATATCAAACAATGTTTGGAAAT TTTGGAAACACCTGTCCTGAATAAAGCAATCAATGTTAAAAACGCCAGTA AGGAGGTAAGTAAAAAATTGCTCATAAAGAGTACACAACGTTTTTTGCCA GTAAGTGCACTTATATAACACCCGCTGTAACCCCAGCCCAACTGGAGAAT TTGGCAAACATTTCGTCGCCGGTGGAAAATTACCCTGGAATTTTAACCCC ATTGGGAAATTGACTTTGATTTCATCCCCATTTGAAATTCGATGCTTAAG AATTGCACTCCAATAAAACCATCTCCACTGGATTTTTTAAACTTGGAACA ATAGAATTTCTCCATCAGGATGATCCTCCGGGGCTTTGAGACAGGGGTGT TATAAACCATCATTCATATTTCCCTTCTTTTATTTTTCATTGGAAATTTT CCCCGCTTTGAAACCCTTGTCTCGATGACCAGTAGTCTAGAGCTAGACTA CTAATTAACATCAGTTTTACTCGAAAGTTTCTTTTAACAGTAGTAGAAAA AAGCTACCTAGAAGTTTGTTTACTTTTCCCGTACGGCTTTTTTCTTCTTT TTGACTTTGAGGCAGGATTGTTCCTACGTTTTGTGTTAAAAGAATAGTGG TCTGGAAATCGAGGCTAAGAGACCAGGTGAAAAGCTTGCTTTGCCAGTAG AAGATATAATAATTTTCTTCCAATGGGTAATCAAGAATCAGCTCAAAGTC ATCGAGGAAGGGTCGAGGAAGCTAGCTTAGTGCGAAACATCGGACATTAA TATCTTAAATATTGTCATTGTTTTGTTAAATACTCATTACAGAGTTTGAA ATCCTCTGTCACGTCTTGACAAACTATTTCCTTCTAATATAGAAGCATAA TTGACGGAAATGAGAGAGTTTATATTTAACGAGTGAACTTCAATCTTTCG GTTTTGATTGTAAAATTGGAGAGAAAGCATTGAATGATTAGGAAATTCTA TGTAAACGTACTATGAGTTTCTTAAATGAGCCCCCTCCCCAGCGGTAACT CTGATCACGATATCAAGCAATTTTTTGTCTTCAATCACGATCCCGCAAAT ATGAAAAAATGGACAATCACGCATCCCTTTGAAAAAGTCCAAATCACGAT CACGTTTTGACCTCTCATCACGCTATCACGTAATCATGCCCTAAAAAAGT CCCTATCTACAATCAGGGACAAAATACTTGGCCCAAAAGGGAAATTCACC GGGGTGTTTTGAAACCACAATCGATTTGTAAGTGCTCTAAAGTAGGTTCG AAGGGTAGAGTCTTAACTCTGAGTTTTAACGCTAGACTTAAGACTTAGGA CCTTAGGATCTGAGGATCCAAATAAAGTTCAAAAATGGTCCAGTAGGGCT TGAAATATAGCCTAGAAACCAATAAATCCCTCCCAGATCGAAATAATCGA TGAAATCAAGTTGAGGGCCTGAAATTGACATTCTCGCTCGAACTTCAATT TTCGAAAAATGGTAAATTAGCCAAAAGTGCAAATATATTATGGCACGGAT TGTAGTCATCACGAAAACCGCTCGGGGCCTCTTGAATAGAGGTTTAATTC AATACATATGTGCTAGCTCAATATGCATCAAATACAAACTAACAGATTTG AAAAATCTCCTTTCCTAAGTCATGACTAACGAGCTATTCCTTAGAGGAGC TGTTCGAGTTTTTGTCTTCAAGACACAAAAAAGGTACCGCCTAAAAACGG TTTCCGGAAAGTACTTCCGTTGCCCTTAGCACAAATCGATTTGGTTTAAG AAATGTATGAATTTTGTTTGATAGCGAACCGATCATATAATGTTCTTTCG TAACCACAAAGAAATTGTGTTTATTTTGTCTTGACGCACAGCCGTTTTAA ATCCCTTCTAAATGATCTAACAGTTGATATCTTTTAGAAATTTGGATTTT TCGCAAATTATTTGAATGAATTTGGCAACTACAGGTTATCTCCACTTAGG ATTTGATGTAAAGTATTAGAACTATCATCATATAAAAAGTTTTCCTATAA GAACAAACCATATAAGATTATCAGACTTTGATGGCTAAAATATTAAGAAC ATGTTAAGAACATTTCAAGGCTTTGCCCGGGAATTTAAAACACCTATTTT CTTAGGAAACGGCGTAGAAAATACTCATTAAGTAATGAAAAATGAATATT TTAAGAATATCTTTATGCTTAAAACTCAAAAAGTTTAGGAAATCCGAAGG CTTTAAAAATTTGGATATTCTTATAAAAAACATGTAAAACCGTGAAATTA GCTAGACAAAAATTGAAGAAACGTTGTGTCTGTGATAGGGTGGGAGCATG TTCATTCTTTTAAAGTTATATATTCACACTATCATTCCATTTTCTAGGTC CCTATCCTGATATTACTGAAAAAATGTTTCACACAATGTGACAAAATCTT GGAGAAGTTTTTGGATCTAGATGTCCGTGTGAAAGCTATTGATCATTCAG CCAATAACATTTTCCATCTTTCAATATCTGAAGCACCTGATGAATCTCAA TGCCTTCAAATCCTGGACATTTTGTTTAAATATTCAAAGTAAGTTAAAAA GTTTTATGAACAGCATGTTTTATCAGCGATCCAAAAAATATCTGCAATCT GATTGGTTAAAAAGAGTACGATATATCTTGTATTTTACATGTAAAAATAT AAATTGACGAAAAGATGTTGTTGCATTGTAGCGGCAGAAGCAATCTAACG TCACTTTGCTACAAAAGTGTCCTCCAAGATAAAAAGTGCATTTTTTGGGT CACCGATAAACCAGTTATCAGACATTTGCTCGTACAATATGGAAATATTG TACTCGCAACTGTCTGATAACTATTACATATCACACACCCCTGTCTCATA GCCCCGGTGGAACTTTTTTCCACAGTGGGTGTGTACAATGGGAATGAAAT TTCTTATCAAAACCTCTACGGGGATAAACATTATATTGTTCTCAGCTCGT AAGATCTAGTGGGGATAGCTTTGGAGTGCAATAATATCTTCCATTGAATT TCAAATAGGAATGAAATCATGGTCAATTTTACAGTTGGGCTTAAATTGTA AGGTATTTTTCACATCGGGGAGAAAATTTTTGCCAGATTTTCAACTGAGG CGAGGGACCGCAGGGTTAGTGACACCAAAGTGTTTCTAGTTACGGTAAAA ATCTAAAAGACTGCAAAATACAAGAAAGGTTTTGTGAATACACCCAAAAA CACAGGGTTTGATATCATGAAAGCTCACATGCTTTTCTTCTCATTCATTA GATACAAAGAAGATTACAAATGGCTGATGAACCAACGTAATGTATCAGGT TACACTCCAAGCCATATTGCAACTATCAGAGGTTATGGAAAAGCAATATG GAAATTTCACGAAAACGAGGCTAACCTTAACCTACAGGTATGGTGGTAAT TTCACGCCAAACTCCAATTCTATTATTTTGTTGGTCTTATCGCGTTAAAT TAAAGCTCGGGGGATTATTTTAGCAAATGTGGGTACGGGTATGTGTCGCC CTTAACCCTATTCAACCTAGGCTTTTAGGGGCGGTTCAGAACTAAGGGGG GGGGGGGAATTTTCCTGTACCACCTCTTAACTTTTAATCTATTTTTGGAT AAAATTTGGCACACAAGTTCCTTGTCACGTATAAGGTAACTTTTGACAAA AAATTTTTTTGATGACGTCACTCATTATGCCCAAAGTGAGCAAGAACCGA AAATTTCCCTTGTTCTTATAAATAGCTATTGTATTCTAACAAAGGATTTG GAAAAAAGTTGCCTGGGTTTAAAATGCTTATTATATCCTAAATATTCAAT AAATTACGGTTTAAACGATATATTTGACATTAAAAATAAATTTGTATTAG AAAAGTGTCAATTTTTGTGACACCTTACTGTCAGAAATGTCATCATGCTC AAGGTGTGAAAATTTTTAGTTGTCAAATTTTTATTTATTTTGAAGCTAAA TAAAAGTTAGGAATTTACAGAAAATTTCACGGCAAAAGCCTTATTATTTC AGGAGCTATTACCAATAGTTTGACCTAGGGTTAAAGAAGTCTTTTGAGAC CTTGAAAAATTCCTCTAAGGATTGTAAAAATCATAATATCTAATTTCAGT CTCCCTAAGGCTTACAAAAAAATCAAAATCTCATAAAAGTCGTAGTTGGA TTAACCATTGATCTAGAGTCACGATACTAATTTTAATTTATTTTTGTGAA TTATTGCACAATTTGAATGAAATATCTCTTGCAATCCGAGAGTTATTTTG TCTGGCATTTTACTTAAAGGATTAGCATTAAGCCAAACAAAAAACAATAT CATTCATTTGCGAGATGAAACCCTGGTAGGAAATATTCAAGTTACAAGTT ATTTTGACTTTAACTAAAATACAATAAACTCAAATCAAACATTTACATTT ATATAAAAGTTTGCTGAGTATCCACGAGATTTTACCTCCTGTGTTGATAA AGCCCGGGAGGGGGTACTTAGGCAAATGGAGGGTACGGTATGTGCCGCCC TTAAGGGTAACTTTTTTGGATTTCCAAAGTCCCACTAAGGGTCAGAGAAA TAGGAAAATTTAAATTTTTTACCCCCGGAAAGATCGAAATTTGGTCAAAT TTGTCCCAATAAGGGTTTTCCTTAGTTTTCTCCTTTTTAGTCCCGGTAAG GGTCCAAGAGTCGAAAGCCGAGCGGCACCCCCCCCCATCAGTTCGCAACC CTAGTACCCCCCTGGTTGGTAAAGTCTATTTAAAACAATCAGACATTAGA AAGATTTATTTTCATTATCCTCTATTATAACTTTTATAACTTAAGACTTG ATATATATGATACTTCTCGATACTTCTTTTCAGGATTTTCAAGCACAAAA GACATGTTTAGTAATGGCTGCCGAAAACCAAAACTGGCCTCTCGTCACAG AACTCATTAAAATGAATGTTAATGTCAACGTGGCCGCCCGTGGCGATCAA CGGGCAATTAATTACGCCATTAAATCAAGTCGGGCGGACATCATAACTTT GCTGTTTGAGCACGATACAGAATGTTTGAAATGGAAAGATATTGTCCCAT CAGAGGAGGTAAAGGGTTTTTGATTTTTTAGAGAATGCTTTTTTGTAAGA ACGCCGAGGCTTATTTTCATATTACTTTATGAGTATTTTGATAGAAAATG ACCATGTACTAAAAACTCGAGTCCTTTGAGATGATAAACAGAGGGATTTT AGTTTGTGGATTTTTCTATTGCATTTTTGAAATTGTAGAAGTTCTGCATC GATTGCGGTACAGTATATTCACTCATAGGCATTTGAAATAAGGCCATGGG ACCCGAAAAAAGCTCAAAGTTTTACTTACTTGGCTTATATCCTCAGTATA CTTTTTTTTAGATTGAAAAATTGGTTCGTAAGTTGATTCGAAAGAAAAGG CGAAAGAAGAAGGAAGGGAAAGTGGAACGCGTCGAATGACAATGAATAAC TACTAGTGATCGAATTCTGGGGCAAAAATCGGTACTAGGTTATGTGCGGT CGGCAAGGGCCGGATTTCAGAGGTCCGGTCCGCAAATTCCCGACACTCTC TGACCCTAGTACCCCTTCTCCACGGGGAACGAACAAATGGATGAATGGAT AAATGGATGGAAGAATATCTGAATAGGCCATTGATCATGGGTAATAAGGA CTCTAGTAATGACTTCCGGTTGGCTGGACGCAAAATTCTTCAAATCTTCA AAACTTTGGACGAATAGTAAGTCGCCATTAGCGCGCAGTGGTCTTGATTA CCCATTACGCTTTGCGACTGTGAAATGGCCTATGAAGGAATGAATGGATT ATTTACTGTATAGATGAAAGAGTAAATGAATGAGCGGGTGACTGACTCGA TAAGTAAACTTTTGCTCAAAAACAGTAAAATTGTTTTCTATGGTCTATCT TCTGAATCAGGCTTCCAAATGTCAATTTCTGATAGATGATGTGTGATGGC GTCATCAAAAGCTTTCAACAACTTCAAAATCGATCGAATGTGATTGTGGT TCTTGGAATCTTAACATTACCCTTTCCGTGTCCATGTCATGTATATCTGA CATTGCGAAAACCCTTTTGGAAAATGATATTTTTTAGAATCAATTGAGCA CCTGCACAAAAAAACTGGGCAAAAATTTATAAGTCATGTCCAGTATATCT GACATTGGGCCTGGCGGCTAACAATTGGTGTGGACAAATATACATGCCAT CGGCTGCTCAAAATATTTTTCTCATTTTCTTCCGCCGAAAACAACAACAT CACCTCGAAAATTTTTGTTAATTTCTTTTGCAATTTCCCCCCTTTGGGGC GGAAAGAATTAATGTTCATTTTTGAGTGTTAATTTAGGCCTTCTATCTCT ACCAAATAAGTAAAAGAAGAACTGGATATATAATCAATTTGTTTTTAAAG ATTGTTTAGCTTCGAACATATTGTTATATGCGTTTATACACGATTACTTA AATTTAATCAAATTTCTGTACATAAATTATTTTTTACCCAAAATTTTAAC TTTTTTAACACTTTCTTTAAAAAAATATACTAAAATGCTTGAAAAATTGT TTGAATTGAAATATTTACATTGAAAATAAAAATCATCAAAATTAAAAAAA TATTCAAATGATTTCCCATTAGAACACCCCTGTCTCATTTACTCGTTGAG AATTTATTAGCCAGAGGGGGTAAACTAAAGTAGTTTAATGGCCATCGGGT TGGATATTTTTCTTTGATGAGTTCTTCTAATTAAATTATATAAAGCTAAA AAATCAAGAAAAATCAAGCTTAAAAATATGGCATAAATATATGGCAAAAA TATAGTAAGGATAGGTCAAGGGGGTAGGTATTCAATTGAAAATTCAGTTT CTTTGTCACCAGAGACGAGCTCCGCCGATTCCGATTTCTTTAATGGATGG ATTGTCAAGCTGAGAATGTGAAATGTTTGTATAATGAGGTGAAATTCAGA TCAAATATTATCAAATCTTCACGTTGAAGTTCTTCGAAATGATTAAAATA GGTCCGAGCACGCGGACTTTGGCTTAAATTGCTAACAGAATCAATCGAGG TTTCAAAA

Coding sequence (CDS) from alignment at sc0000078_pilon:1451835..1460992-

>MSTRG.11038.1.p1 ID=MSTRG.11038.1.p1|Name=MSTRG.11038.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1320bp|location=Sequence derived from alignment at sc0000078_pilon:1451835..1460992- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGCAGTAGAAAAGAATCATCATGCACCAACCAAAACACGTTAACAAC
ATCTATTGCCAAGATAGGGTCTGCTGTCAACAGTCCTCGAAATCGATTAT
TTCAGATTCGGCAACAACAAACACCAGTTTCCAGTAGCTCATCTATATAC
AATCCACCTCAAAGACGTGTGGTGAACTTAGATACTTGGCCAAACAATGC
TGGTAGCTTTGACAATAATAATGCCGCTATGGCTCAAATGTATAGCAGCA
GATGGGGTGTATATGATAATACCACATTCAATATCGGTTACAATGATGGA
GGATTCTCAAAACTACCACCACTGAATATGAATGGTATTGATAATAATAG
TATGGACAATCTAGACCATAATCAATTCTCACCTAAACACACCATGATGA
ACAACAGCCCTAATATGAGTCCCAACAACTATATGCAACAAAATATGAAC
AATAATCCATTTACAACGGTACAGACTTCCAATAGTAACACGTTGAATGA
TAGTCTATTTCACCAGAATCAACAACAACAGCAAAATCTGAACACTCATA
ACAATCAGCAGCAAAATCATCAGATAAGCGTTACAATGCAAAATTCGAAC
TTTCATCACACCAATAACCAAATAAATAACACAACCACAAACTTTCAAAC
ACAGCACTCCCAACAACCTTGTATAGATCTAAATACAACGAGTTTTAACC
CACAACACACGATAGAACAACAAAATAACACGAACACTTTATTCCAGCAA
AGCCAACAGACCCAGCATAATGTGGATCATCGACAGACTATAAATAGTGT
AAATAACACAAGCAATTTTCAACAACAGAACATTTTTAACCAATTCGATC
AACAGCAAACTGAAATAAACTCTGCAATTCCTCAATCCTTAGTTGATATT
GTTATGGAAATGGAAGAAGAAACTCCCGAACAAACATTTGAGCAGATGCT
GACAGACCATAACAAAAATATTCAAAATACTTGTAGCTATGGAAACTCTC
CAGTCCCAGAGACTTTCAACGATGATTCCATGATGGATATAAGTGATATG
AATGACATTTTTACCAATATTCCATCAATAAGGCCACCTTCTACGTGGAA
TTTCGATATTGTTGAACAAAACAATAAAATGAATATAGAAAACTTTGGAT
CGTCTACTTCACAATTGATTAACGAACTTAAAAAAGAGAATCTGAAAGCA
GAGCCAGCGGTGTCTATAAACTCGCTATCAACAACATCAATGATAACAGA
GCAAATTCACAAAACTTTCAACAAACTTTTGAAAACACTCAGCAGACATT
GCAAAATCAACAAGATATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11038MSTRG.11038Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11038.1.p1.exon6MSTRG.11038.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11038.1.p1.exon5MSTRG.11038.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11038.1.p1.exon4MSTRG.11038.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11038.1.p1.exon3MSTRG.11038.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11038.1.p1.exon2MSTRG.11038.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11038.1.p1.exon1MSTRG.11038.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11038.1.p1MSTRG.11038.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078_pilongenomesc0000078_pilon:1451835..1460992 -