MSTRG.11033.4.p2 (mRNA) -

Overview


Name	MSTRG.11033.4.p2
Unique Name	MSTRG.11033.4.p2
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:1446221..1452552+
coding sequence from alignment at sc0000078_pilon:1446221..1452552+

mRNA from alignment at sc0000078_pilon:1446221..1452552+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.11033.4.p2 ID=MSTRG.11033.4.p2|Name=MSTRG.11033.4.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6332bp|location=Sequence derived from alignment at sc0000078_pilon:1446221..1452552+ (Clytia hemisphaerica_ch_hm2_pilon)
TCAATGGTGCTTGGAGCCATTGGTCGGAATTTTCACCTTGCTCAGTCACG
TGTTCATATGGAACACGTGTTCGATTACGCACGTGTACTGAACCAGTTCC
CGCCAATAATGGTGCTGATTGTACGGGACCGAGAGTGGAAGATGAAGAAT
GCTATATGGGGCCTTGCAAAGGTGAGGGATTCTAAATAAGCTTGAGTGTC
TACCAATTTCATCATCTCGAAAATTCATGATATCTTTCTCAATAACGTGT
TTGATTCCGTTACCCAAAGGTCTTATTTAGGCCTGGCAAACGACGAATTT
CGCCGGTCCAAGGCACAAAAACATTACAATTCACAGTTCGAAAAGTTTGG
TTcgccgcctcaagtacatatttacgATAATCAAAACACTgcgcttgcta
agaattcgttaatttttcattcgccagcctaccaaaaacaaagcaaaacc
cctgGTACCTCAATCAATGGGTTCTTTAAAGTCTTCTTAGTTAAAATTTT
AAGTAATTTCTTCAGGTCTTTTTTATACTGAGATTTCTTGACTCATATTT
AACAATTTGGCTGTGCTTGTGTTTTTAAAAATCGGTCTTTATAGAgagcg
aaaaagtgaaaaaatctaatttttatttgttGCTTTCATTGGTTTTTTAT
CGAATTCACGTGATAGATTTCTCTTTTGATCTAAATTTTAGTCGGACAAT
CTGCTCCTTCAATAGTTTACACCACGCCATTTCCAACCACCCGCCACCAT
ACAGCAACGTCCTCAAGCTACTACTCAAACGCCTCTATTATACCCACATT
ACCGCCAGCAAGCAATACACAGAAAGTTATGGTCACGACACCTGCATATT
ATTCACCGACAAATTCAACACTATTAACTTCAATTTCATTCACAAATGCA
ACTAATTTCCAATCGACACCTCAAAACATCACTAATACATCATCAATAGT
TtcatcaaccaatcagaatccATCAAGTCCATCAGTAGCCAATCAGGGCT
CATTATTGAATCAAGCAACGTCCAATCAGAATCTGTCGCTACCGGCAACT
GCATCTCACAACTCAAAACAACCAGTAGAATTTCCACCAGCTGATGACAA
TAAACCAACAACATCCTCGTCAAAAACAGAAGCAAGACTGACCACCAGTA
ATAAAACTAGCACTGACTCTTTAGGTAAGAATATGAAACAGACATTGATG
CTTTTTGAGGAAACTATTATTTTCCATTACAAGTAAAGCAAGCAAGTTTG
CCACCGTAGTCGAAGGCAGCCTGAAGAGTTACTTTTCTCTGACTGTCTAC
CCGAAAGTACGGGAAGGCGGCAGCTCTTTTTCCAGAAATTCTCCACTTAC
TCTCATTCTTTTCTTTAGTTACTGAGTATTAAGCAGAAAGGCATCAAATA
CTAATACTTTTTTGTACTAAGTacaaagtctttggtatgacccggtcGGA
GATTGAACTAACTTGCGCACTGTAGCTAGAAACTCTACGGCCGCATACCC
TCGTCTGTAAAAGACTTGCTACAATATGTTTAATTTTCTAGCCAATAATA
TCCCTCTTTTATTTTAGAGCCACCTGATAAAAATCAAGAATCTTTCCATT
ACTTCCCTCAACAATAGCCTTTTCAGCAGaaaaaaaCTGATTGCAAATGT
TCTACGGCTTTCGGCTCATTTCTTAAAGATAAAGATTTGTCTTAGACTCT
AGCATAGTTTAGCCCTTTCAATGAGCGATATTTTGAGCTCTCCAGATAAT
CCGAAAAATTTAGCTTTCTCTTTAAGTGTTTGAGTTGCAGAAGAAAGGGG
CCCTAGGGGTATCCAATTTAAAACAGTTATATGTTCAGTCTACAATATAG
TAGagtcttcttaactcgaacatctatgactcgaatatctccttaactgG
AACAAGTTTTACAGTCCCTGccgttaacaatgccttataaacatCTCACT
TCATAACTTGAAACTTACTTtgactcgaacaaatttgtgttctccGCGTA
GGTTCGAGCAATGGAGACTCTACTTTAATGATCTTTTGAGTGCTCACCTC
TATGTAGAGGGGACTGTTTCAAGCTTAATCAATCctaaattcatattttt
ctctACAACAGCGTCTAACAACCAACCAACAATGAACAGTTTAGCAAATG
TGACATCAAACAAGTCCACACCAAGTGGTTTTGTAGATAGCAAGAATAAT
TTGTTACCAACACTGACTGTTGAAAAGGTTTTACACCCGTCATTAAGAGC
AAACATGACGAACAATGATGGTTAGTATTTTATTGTTTCTCTCTCTaaaa
tcatggtcgtaatatttgagaaaaaagggacaTTCCCACaaaatcttata
gccacaatcgatttggaagcgctctggcttaggttggaagggttaGAGTA
TTAACTCTGAGTTTCAACATGAGACTTAATACTTACGacctaaaactttt
ttttaaattttgctgttgtcaaagtgcaaaaaaagggacgacaaaattcc
aaaaaatatttttttgtataatgatacttttaatgatgtgcaactttagt
ccaaattttatggtaattttcatgtttttgagacatgccataacttattT
GAGTAGCTCTTAATGAACTAGATGCAGAAACATTGCTTTACTTTATAAAG
GTAACCTCTACCAGACCCCTCTTTTTTGTAGACtgatcaaaaaaatattc
tccTGTCACATCTTTTCCTCGGTTTTTCTTAGCCAAGAAAGTTTCTGGAG
CATCGACAAGATCTCCAACAGAGAGCAGTGAAGGTAAGATACattaattc
aatttcatttcattgctAGGACTAATTACTTGATAGTGCCGTAACATCAA
ACGAATCgaatttgttttatatttttaggaAGCTGCAGTGAGGCTTCGTT
GCTTAAACTTCCGTTAAACGACACTCAATTCACGGCGTCGTCCGTCTATT
CTCACGACACGGACGACGATTATGTCAAAAGGGAATATGCACCGCCAAAC
GCCCGTCTTAATAATGAAATCAATGGAGGTAAGACTTTTACTATTATTGT
GTTTAAAACTCTAAAAGGGGTTAAATTTGAAATCCTTTAATGGGGGAAAG
ATGCAACATTTTCCCATCCAAAATGCGTGACCCGTGTGTGATTTTCACAC
AAACgtcggattgaaagtaaaacccaCCGCCAGATCTCGACAATATGCca
ctcgaaaaaaaaaagaaaatactatTATATTCAATCCGTCTTTGAAAAGG
TGGCcgaaatcttaaggcttcactttttcttgtatgagaaaggttgaaga
ttcttcTCTTGCCCCCGCTGcaaaatttgaacatttttattcataaTTGG
AGGTTTTCACTAAGTTACCTAATAGTTAATGCTAGACAAATTTATACGGT
GGTTCGATTCGAGTTCTTCTTTTCGAAGTGTTTCAAGTTTCTCGCGATAA
CTTTATTAAAAGATAATAACAGTGCCTATTTCGATGACATTTCAGTCTGG
TAAAAAAGTTTAGGTATAAGTCCTACTGAGGATTATTTTTTGACCGATCC
AATGTTGGAAATAGAAATATATATAATCTACTCGAGCTTAACATGGGGAT
ATTTGCTCTCCATCTTCGATTCTTTGGATATTCATGTGATTGAGACATGC
GTGATAAAATTCTTACAGTCCGTCTCCACAGCGTAGTTTCTGAGAAATCC
AAGCTATTAATCACGGTTCAAATCAGCACAATGGCTGTtacaaaaattct
tataaaaatcaattttcgtagGTGGTTGGTGTGCAGAGCATAAATACAGT
ACACAAGATGATAAAGATCAATTCATACAAATCGACCTCGGGAAACAGAT
GTCTGTGGATGGTGTAGCAACCCAGGGTAGTCATTTATTAGAGAATTGgg
tcaaaaaatataatttgagATACAGCGATGATGGCAAGAGTTGGCAATAC
TACTCAAAGGTAAAGTTACAATActtctttgtttatttacagtaatctga
aaaatttgcaaatagcCAACTATTTTCTATTAATACCAGTAGGATACCGT
CAGACCATCTTCGCatgtgacggttccgtttcgctccgaaacgaggTTAA
GTCATTTTATTGGTAAAATTCAAGTGTTACATCACTTCttaccaatagaa
tggcttcattccgtttcggagcgaaacggaaccgtcacgtgcgaacatgg
ccTCAGAgatgaaatttgttttcaatttctgaggatgtaagatttttttt
tttttgaatcgtAGCACGGACAATGTGACTTTTCCACCCATTGGTGACTA
GCGTTTAGACATTGCAATGAGCGAAGATTATTCCAGTTTTTTCTCCTTCT
GGAAGATTTTTAGCCCTTTTCACCCAACAAGCCCAGGGGCTTAAACACGG
ATTAACAATTAATAGAGCTTAATGCAAATTAGCAATGTTATCaattattg
agaattgttttgtCGTTTTTATTTAGAATCCACTCAATGGTAATAACGAT
CAAAACAGTATCCAGCGAAGTGTGATTTCTCCACCAATCACAGGCCgtta
ttttcaattaaatccAATCGAATGGAACCAAGGTGTTGAACCTGATAAAC
ATGATATATGTATGAGGATTGCATTATTCAAGTGTAAAGGTAAGGTTTTT
CTATAAATTCTATTGAGGTTGAAGTTTCGTCATCCGAAATTCGGAACTTA
GGAAAGGTTGAAGAATCGCCTCTGGCTTTTGGCTTGAAgttcaatgcaat
ttttctaATTATTTGATTATGTCCTATATATAAGTCATCGGTGAATCAAG
CCATCAAAGGTTTAGACAAAAAGCCAAACACATAAAACTATGGAACCTGT
AAAATGTGTGACAAATTTAAACGTCTaaaaaaaCTTAACATTTACCGAAT
AAAAGCTATGTATGATTTTGCTTTGGAATTTATCCAGCTGCTAAATAAAA
GGCTAGTTCATCATCAACCACCATCGACATGATGAATTCTTCGCAATATC
TTTTCGATCCATAGAAACCCCATCCTCAGAAACCTCAGAAGCTCCTACAT
CACCTACCGTTAAACGAAGCTTTATACAACCACGCCCACATCATCGTAGC
ATCAATAATAAGCGTGGCGTGGTCATACGAGAACAAGCATGGTGGACACA
CTACCCAGAAGAAAAAGCTAAATTAACTTTATTGAACGTTAATAAAATTG
TTGGTCCTAGTGAAGCCAGGATTCGAAGACAGGATGAGGATGTCTTAACA
GTTTTCCCAGGACATAAGAAAGGacataaaagaattttttcaaagattcg
tAAAATTGCACATAATATTATGAAAAAGATTAGAGCCAAAAGCAAGAAGC
AAAGAATGAAATAAAGGACTGGATCTTATTTGGTTTTGCTATACAAGAAG
AATTCTTCTACATCGCAATCTACAGTGTATTTTGTCAATGGTTGCGGATC
ACTGCCATAAGAAGAGTGCCTGGCATTTCTTACAGATGCTGTTCTTTTAT
GAAACAATTATTTATTTGAGCTTCAAAAACATTTACAATGCTTCTACAAT
GTACATGATTTGAGTGTTATGGTCATtacaaaaagatatcaaacttCAAA
TTCGAAAACGTTTCTTTTGAAACCTCGATTGATTCTGTTAGCAATTTAAG
CCAAAGTCCGCGTGCTCGGACCTATTTTAATCATTTCGAAGAACTTCAAC
GTGAAGATTTGATAATATTTGATCTGAATTTCACCTCATTATACAAACAT
TTCACATTCTCAGCTTGACAATCCATCCATTAAAGAAATCGGAATCGGCG
GAGCTCGTCTCTGGTGACAAAGAAACTGAATTTTCAATTGAATACCTACC
CCCTTGACCTATCCTTACtatatttttgccatatatttatgccatatttt
taagcttgatttttcttgattttttagctttatataatttaattaGAAGA
ACTCATCAAAGAAAAATATCCAACCCGATGGCCATTAAACTACTTTAGTT
TACCCCCTCTGGCTAATAAATTCTCAACGAgtaaatgagacaggggtgtt
ctaatgggaaatcatttgaatatttttttaattttgatgatttttatttt
caatgtaaatatttcaattcaaacaatttttcaagcattttagtatattt
ttttaaagaaagtgttaaaaaagttaaaattttgggtaaaaaataattta
tgtacagaaatttgattaaatttaagtaatCGTGTATAAACGCATATAAC
AATATGTTCGAAGCTAAAcaatctttaaaaacaaattgatTATATATCCA
GTTCTTCTTTTACTTATTTGGTAGAGATAGAA

Coding sequence (CDS) from alignment at sc0000078_pilon:1446221..1452552+

>MSTRG.11033.4.p2 ID=MSTRG.11033.4.p2|Name=MSTRG.11033.4.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000078_pilon:1446221..1452552+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCTGTGGATGGTGTAGCAACCCAGGGTAGTCATTTATTAGAGAATTG
ggtcaaaaaatataatttgagATACAGCGATGATGGCAAGAGTTGGCAAT
ACTACTCAAAGAATCCACTCAATGGTAATAACGATCAAAACAGTATCCAG
CGAAGTGTGATTTCTCCACCAATCACAGGCCgttattttcaattaaatcc
AATCGAATGGAACCAAGGTGTTGAACCTGATAAACATGATATATGTATGA
GGATTGCATTATTCAAGTGTAAAGAAACCCCATCCTCAGAAACCTCAGAA
GCTCCTACATCACCTACCGTTAAACGAAGCTTTATACAACCACGCCCACA
TCATCGTAGCATCAATAATAAGCGTGGCGTGGTCATACGAGAACAAGCAT
GGTGGACACACTACCCAGAAGAAAAAGCTAAATTAACTTTATTGAACGTT
AATAAAATTGTTGGTCCTAGTGAAGCCAGGATTCGAAGACAGGATGAGGA
TGTCTTAACAGTTTTCCCAGGACATAAGAAAGGacataaaagaatttttt
caaagattcgtAAAATTGCACATAATATTATGAAAAAGATTAGAGCCAAA
AGCAAGAAGCAAAGAATGAAATAAATGTCTGTGGATGGTGTAGCAACCCA
GGGTAGTCATTTATTAGAGAATTGggtcaaaaaatataatttgagATACA
GCGATGATGGCAAGAGTTGGCAATACTACTCAAAGAATCCACTCAATGGT
AATAACGATCAAAACAGTATCCAGCGAAGTGTGATTTCTCCACCAATCAC
AGGCCgttattttcaattaaatccAATCGAATGGAACCAAGGTGTTGAAC
CTGATAAACATGATATATGTATGAGGATTGCATTATTCAAGTGTAAAGAA
ACCCCATCCTCAGAAACCTCAGAAGCTCCTACATCACCTACCGTTAAACG
AAGCTTTATACAACCACGCCCACATCATCGTAGCATCAATAATAAGCGTG
GCGTGGTCATACGAGAACAAGCATGGTGGACACACTACCCAGAAGAAAAA
GCTAAATTAACTTTATTGAACGTTAATAAAATTGTTGGTCCTAGTGAAGC
CAGGATTCGAAGACAGGATGAGGATGTCTTAACAGTTTTCCCAGGACATA
AGAAAGGacataaaagaattttttcaaagattcgtAAAATTGCACATAAT
ATTATGAAAAAGATTAGAGCCAAAAGCAAGAAGCAAAGAATGAAATAAAT
GTCTGTGGATGGTGTAGCAACCCAGGGTAGTCATTTATTAGAGAATTGgg
tcaaaaaatataatttgagATACAGCGATGATGGCAAGAGTTGGCAATAC
TACTCAAAGAATCCACTCAATGGTAATAACGATCAAAACAGTATCCAGCG
AAGTGTGATTTCTCCACCAATCACAGGCCgttattttcaattaaatccAA
TCGAATGGAACCAAGGTGTTGAACCTGATAAACATGATATATGTATGAGG
ATTGCATTATTCAAGTGTAAAGAAACCCCATCCTCAGAAACCTCAGAAGC
TCCTACATCACCTACCGTTAAACGAAGCTTTATACAACCACGCCCACATC
ATCGTAGCATCAATAATAAGCGTGGCGTGGTCATACGAGAACAAGCATGG
TGGACACACTACCCAGAAGAAAAAGCTAAATTAACTTTATTGAACGTTAA
TAAAATTGTTGGTCCTAGTGAAGCCAGGATTCGAAGACAGGATGAGGATG
TCTTAACAGTTTTCCCAGGACATAAGAAAGGacataaaagaattttttca
aagattcgtAAAATTGCACATAATATTATGAAAAAGATTAGAGCCAAAAG
CAAGAAGCAAAGAATGAAATAA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.11033	MSTRG.11033	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11033.4.p2	MSTRG.11033.4.p2-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11033.4.p2.exon1	MSTRG.11033.4.p2.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11033.4.p2.exon2	MSTRG.11033.4.p2.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11033.4.p2.exon3	MSTRG.11033.4.p2.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11033.4.p2.exon4	MSTRG.11033.4.p2.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11033.4.p2.exon5	MSTRG.11033.4.p2.exon5	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11033.4.p2.exon6	MSTRG.11033.4.p2.exon6	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11033.4.p2.exon7	MSTRG.11033.4.p2.exon7	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11033.4.p2.exon8	MSTRG.11033.4.p2.exon8	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000078_pilon	genome	sc0000078_pilon:1446221..1452552 +

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MSTRG.11033.4.p2 (mRNA) -