MSTRG.11033.4.p1 (mRNA) -

Overview
NameMSTRG.11033.4.p1
Unique NameMSTRG.11033.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:1446221..1452552+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11033.4.p1 ID=MSTRG.11033.4.p1|Name=MSTRG.11033.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6332bp|location=Sequence derived from alignment at sc0000078_pilon:1446221..1452552+ (Clytia hemisphaerica_ch_hm2_pilon)
TCAATGGTGCTTGGAGCCATTGGTCGGAATTTTCACCTTGCTCAGTCACG
TGTTCATATGGAACACGTGTTCGATTACGCACGTGTACTGAACCAGTTCC
CGCCAATAATGGTGCTGATTGTACGGGACCGAGAGTGGAAGATGAAGAAT
GCTATATGGGGCCTTGCAAAGGTGAGGGATTCTAAATAAGCTTGAGTGTC
TACCAATTTCATCATCTCGAAAATTCATGATATCTTTCTCAATAACGTGT
TTGATTCCGTTACCCAAAGGTCTTATTTAGGCCTGGCAAACGACGAATTT
CGCCGGTCCAAGGCACAAAAACATTACAATTCACAGTTCGAAAAGTTTGG
TTcgccgcctcaagtacatatttacgATAATCAAAACACTgcgcttgcta
agaattcgttaatttttcattcgccagcctaccaaaaacaaagcaaaacc
cctgGTACCTCAATCAATGGGTTCTTTAAAGTCTTCTTAGTTAAAATTTT
AAGTAATTTCTTCAGGTCTTTTTTATACTGAGATTTCTTGACTCATATTT
AACAATTTGGCTGTGCTTGTGTTTTTAAAAATCGGTCTTTATAGAgagcg
aaaaagtgaaaaaatctaatttttatttgttGCTTTCATTGGTTTTTTAT
CGAATTCACGTGATAGATTTCTCTTTTGATCTAAATTTTAGTCGGACAAT
CTGCTCCTTCAATAGTTTACACCACGCCATTTCCAACCACCCGCCACCAT
ACAGCAACGTCCTCAAGCTACTACTCAAACGCCTCTATTATACCCACATT
ACCGCCAGCAAGCAATACACAGAAAGTTATGGTCACGACACCTGCATATT
ATTCACCGACAAATTCAACACTATTAACTTCAATTTCATTCACAAATGCA
ACTAATTTCCAATCGACACCTCAAAACATCACTAATACATCATCAATAGT
TtcatcaaccaatcagaatccATCAAGTCCATCAGTAGCCAATCAGGGCT
CATTATTGAATCAAGCAACGTCCAATCAGAATCTGTCGCTACCGGCAACT
GCATCTCACAACTCAAAACAACCAGTAGAATTTCCACCAGCTGATGACAA
TAAACCAACAACATCCTCGTCAAAAACAGAAGCAAGACTGACCACCAGTA
ATAAAACTAGCACTGACTCTTTAGGTAAGAATATGAAACAGACATTGATG
CTTTTTGAGGAAACTATTATTTTCCATTACAAGTAAAGCAAGCAAGTTTG
CCACCGTAGTCGAAGGCAGCCTGAAGAGTTACTTTTCTCTGACTGTCTAC
CCGAAAGTACGGGAAGGCGGCAGCTCTTTTTCCAGAAATTCTCCACTTAC
TCTCATTCTTTTCTTTAGTTACTGAGTATTAAGCAGAAAGGCATCAAATA
CTAATACTTTTTTGTACTAAGTacaaagtctttggtatgacccggtcGGA
GATTGAACTAACTTGCGCACTGTAGCTAGAAACTCTACGGCCGCATACCC
TCGTCTGTAAAAGACTTGCTACAATATGTTTAATTTTCTAGCCAATAATA
TCCCTCTTTTATTTTAGAGCCACCTGATAAAAATCAAGAATCTTTCCATT
ACTTCCCTCAACAATAGCCTTTTCAGCAGaaaaaaaCTGATTGCAAATGT
TCTACGGCTTTCGGCTCATTTCTTAAAGATAAAGATTTGTCTTAGACTCT
AGCATAGTTTAGCCCTTTCAATGAGCGATATTTTGAGCTCTCCAGATAAT
CCGAAAAATTTAGCTTTCTCTTTAAGTGTTTGAGTTGCAGAAGAAAGGGG
CCCTAGGGGTATCCAATTTAAAACAGTTATATGTTCAGTCTACAATATAG
TAGagtcttcttaactcgaacatctatgactcgaatatctccttaactgG
AACAAGTTTTACAGTCCCTGccgttaacaatgccttataaacatCTCACT
TCATAACTTGAAACTTACTTtgactcgaacaaatttgtgttctccGCGTA
GGTTCGAGCAATGGAGACTCTACTTTAATGATCTTTTGAGTGCTCACCTC
TATGTAGAGGGGACTGTTTCAAGCTTAATCAATCctaaattcatattttt
ctctACAACAGCGTCTAACAACCAACCAACAATGAACAGTTTAGCAAATG
TGACATCAAACAAGTCCACACCAAGTGGTTTTGTAGATAGCAAGAATAAT
TTGTTACCAACACTGACTGTTGAAAAGGTTTTACACCCGTCATTAAGAGC
AAACATGACGAACAATGATGGTTAGTATTTTATTGTTTCTCTCTCTaaaa
tcatggtcgtaatatttgagaaaaaagggacaTTCCCACaaaatcttata
gccacaatcgatttggaagcgctctggcttaggttggaagggttaGAGTA
TTAACTCTGAGTTTCAACATGAGACTTAATACTTACGacctaaaactttt
ttttaaattttgctgttgtcaaagtgcaaaaaaagggacgacaaaattcc
aaaaaatatttttttgtataatgatacttttaatgatgtgcaactttagt
ccaaattttatggtaattttcatgtttttgagacatgccataacttattT
GAGTAGCTCTTAATGAACTAGATGCAGAAACATTGCTTTACTTTATAAAG
GTAACCTCTACCAGACCCCTCTTTTTTGTAGACtgatcaaaaaaatattc
tccTGTCACATCTTTTCCTCGGTTTTTCTTAGCCAAGAAAGTTTCTGGAG
CATCGACAAGATCTCCAACAGAGAGCAGTGAAGGTAAGATACattaattc
aatttcatttcattgctAGGACTAATTACTTGATAGTGCCGTAACATCAA
ACGAATCgaatttgttttatatttttaggaAGCTGCAGTGAGGCTTCGTT
GCTTAAACTTCCGTTAAACGACACTCAATTCACGGCGTCGTCCGTCTATT
CTCACGACACGGACGACGATTATGTCAAAAGGGAATATGCACCGCCAAAC
GCCCGTCTTAATAATGAAATCAATGGAGGTAAGACTTTTACTATTATTGT
GTTTAAAACTCTAAAAGGGGTTAAATTTGAAATCCTTTAATGGGGGAAAG
ATGCAACATTTTCCCATCCAAAATGCGTGACCCGTGTGTGATTTTCACAC
AAACgtcggattgaaagtaaaacccaCCGCCAGATCTCGACAATATGCca
ctcgaaaaaaaaaagaaaatactatTATATTCAATCCGTCTTTGAAAAGG
TGGCcgaaatcttaaggcttcactttttcttgtatgagaaaggttgaaga
ttcttcTCTTGCCCCCGCTGcaaaatttgaacatttttattcataaTTGG
AGGTTTTCACTAAGTTACCTAATAGTTAATGCTAGACAAATTTATACGGT
GGTTCGATTCGAGTTCTTCTTTTCGAAGTGTTTCAAGTTTCTCGCGATAA
CTTTATTAAAAGATAATAACAGTGCCTATTTCGATGACATTTCAGTCTGG
TAAAAAAGTTTAGGTATAAGTCCTACTGAGGATTATTTTTTGACCGATCC
AATGTTGGAAATAGAAATATATATAATCTACTCGAGCTTAACATGGGGAT
ATTTGCTCTCCATCTTCGATTCTTTGGATATTCATGTGATTGAGACATGC
GTGATAAAATTCTTACAGTCCGTCTCCACAGCGTAGTTTCTGAGAAATCC
AAGCTATTAATCACGGTTCAAATCAGCACAATGGCTGTtacaaaaattct
tataaaaatcaattttcgtagGTGGTTGGTGTGCAGAGCATAAATACAGT
ACACAAGATGATAAAGATCAATTCATACAAATCGACCTCGGGAAACAGAT
GTCTGTGGATGGTGTAGCAACCCAGGGTAGTCATTTATTAGAGAATTGgg
tcaaaaaatataatttgagATACAGCGATGATGGCAAGAGTTGGCAATAC
TACTCAAAGGTAAAGTTACAATActtctttgtttatttacagtaatctga
aaaatttgcaaatagcCAACTATTTTCTATTAATACCAGTAGGATACCGT
CAGACCATCTTCGCatgtgacggttccgtttcgctccgaaacgaggTTAA
GTCATTTTATTGGTAAAATTCAAGTGTTACATCACTTCttaccaatagaa
tggcttcattccgtttcggagcgaaacggaaccgtcacgtgcgaacatgg
ccTCAGAgatgaaatttgttttcaatttctgaggatgtaagatttttttt
tttttgaatcgtAGCACGGACAATGTGACTTTTCCACCCATTGGTGACTA
GCGTTTAGACATTGCAATGAGCGAAGATTATTCCAGTTTTTTCTCCTTCT
GGAAGATTTTTAGCCCTTTTCACCCAACAAGCCCAGGGGCTTAAACACGG
ATTAACAATTAATAGAGCTTAATGCAAATTAGCAATGTTATCaattattg
agaattgttttgtCGTTTTTATTTAGAATCCACTCAATGGTAATAACGAT
CAAAACAGTATCCAGCGAAGTGTGATTTCTCCACCAATCACAGGCCgtta
ttttcaattaaatccAATCGAATGGAACCAAGGTGTTGAACCTGATAAAC
ATGATATATGTATGAGGATTGCATTATTCAAGTGTAAAGGTAAGGTTTTT
CTATAAATTCTATTGAGGTTGAAGTTTCGTCATCCGAAATTCGGAACTTA
GGAAAGGTTGAAGAATCGCCTCTGGCTTTTGGCTTGAAgttcaatgcaat
ttttctaATTATTTGATTATGTCCTATATATAAGTCATCGGTGAATCAAG
CCATCAAAGGTTTAGACAAAAAGCCAAACACATAAAACTATGGAACCTGT
AAAATGTGTGACAAATTTAAACGTCTaaaaaaaCTTAACATTTACCGAAT
AAAAGCTATGTATGATTTTGCTTTGGAATTTATCCAGCTGCTAAATAAAA
GGCTAGTTCATCATCAACCACCATCGACATGATGAATTCTTCGCAATATC
TTTTCGATCCATAGAAACCCCATCCTCAGAAACCTCAGAAGCTCCTACAT
CACCTACCGTTAAACGAAGCTTTATACAACCACGCCCACATCATCGTAGC
ATCAATAATAAGCGTGGCGTGGTCATACGAGAACAAGCATGGTGGACACA
CTACCCAGAAGAAAAAGCTAAATTAACTTTATTGAACGTTAATAAAATTG
TTGGTCCTAGTGAAGCCAGGATTCGAAGACAGGATGAGGATGTCTTAACA
GTTTTCCCAGGACATAAGAAAGGacataaaagaattttttcaaagattcg
tAAAATTGCACATAATATTATGAAAAAGATTAGAGCCAAAAGCAAGAAGC
AAAGAATGAAATAAAGGACTGGATCTTATTTGGTTTTGCTATACAAGAAG
AATTCTTCTACATCGCAATCTACAGTGTATTTTGTCAATGGTTGCGGATC
ACTGCCATAAGAAGAGTGCCTGGCATTTCTTACAGATGCTGTTCTTTTAT
GAAACAATTATTTATTTGAGCTTCAAAAACATTTACAATGCTTCTACAAT
GTACATGATTTGAGTGTTATGGTCATtacaaaaagatatcaaacttCAAA
TTCGAAAACGTTTCTTTTGAAACCTCGATTGATTCTGTTAGCAATTTAAG
CCAAAGTCCGCGTGCTCGGACCTATTTTAATCATTTCGAAGAACTTCAAC
GTGAAGATTTGATAATATTTGATCTGAATTTCACCTCATTATACAAACAT
TTCACATTCTCAGCTTGACAATCCATCCATTAAAGAAATCGGAATCGGCG
GAGCTCGTCTCTGGTGACAAAGAAACTGAATTTTCAATTGAATACCTACC
CCCTTGACCTATCCTTACtatatttttgccatatatttatgccatatttt
taagcttgatttttcttgattttttagctttatataatttaattaGAAGA
ACTCATCAAAGAAAAATATCCAACCCGATGGCCATTAAACTACTTTAGTT
TACCCCCTCTGGCTAATAAATTCTCAACGAgtaaatgagacaggggtgtt
ctaatgggaaatcatttgaatatttttttaattttgatgatttttatttt
caatgtaaatatttcaattcaaacaatttttcaagcattttagtatattt
ttttaaagaaagtgttaaaaaagttaaaattttgggtaaaaaataattta
tgtacagaaatttgattaaatttaagtaatCGTGTATAAACGCATATAAC
AATATGTTCGAAGCTAAAcaatctttaaaaacaaattgatTATATATCCA
GTTCTTCTTTTACTTATTTGGTAGAGATAGAA

Coding sequence (CDS) from alignment at sc0000078_pilon:1446221..1452552+

>MSTRG.11033.4.p1 ID=MSTRG.11033.4.p1|Name=MSTRG.11033.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3168bp|location=Sequence derived from alignment at sc0000078_pilon:1446221..1452552+ (Clytia hemisphaerica_ch_hm2_pilon)
AATGGTGCTTGGAGCCATTGGTCGGAATTTTCACCTTGCTCAGTCACGTG
TTCATATGGAACACGTGTTCGATTACGCACGTGTACTGAACCAGTTCCCG
CCAATAATGGTGCTGATTGTACGGGACCGAGAGTGGAAGATGAAGAATGC
TATATGGGGCCTTGCAAAGTTTACACCACGCCATTTCCAACCACCCGCCA
CCATACAGCAACGTCCTCAAGCTACTACTCAAACGCCTCTATTATACCCA
CATTACCGCCAGCAAGCAATACACAGAAAGTTATGGTCACGACACCTGCA
TATTATTCACCGACAAATTCAACACTATTAACTTCAATTTCATTCACAAA
TGCAACTAATTTCCAATCGACACCTCAAAACATCACTAATACATCATCAA
TAGTTtcatcaaccaatcagaatccATCAAGTCCATCAGTAGCCAATCAG
GGCTCATTATTGAATCAAGCAACGTCCAATCAGAATCTGTCGCTACCGGC
AACTGCATCTCACAACTCAAAACAACCAGTAGAATTTCCACCAGCTGATG
ACAATAAACCAACAACATCCTCGTCAAAAACAGAAGCAAGACTGACCACC
AGTAATAAAACTAGCACTGACTCTTTAGCGTCTAACAACCAACCAACAAT
GAACAGTTTAGCAAATGTGACATCAAACAAGTCCACACCAAGTGGTTTTG
TAGATAGCAAGAATAATTTGTTACCAACACTGACTGTTGAAAAGGTTTTA
CACCCGTCATTAAGAGCAAACATGACGAACAATGATGACtgaAATGGTGC
TTGGAGCCATTGGTCGGAATTTTCACCTTGCTCAGTCACGTGTTCATATG
GAACACGTGTTCGATTACGCACGTGTACTGAACCAGTTCCCGCCAATAAT
GGTGCTGATTGTACGGGACCGAGAGTGGAAGATGAAGAATGCTATATGGG
GCCTTGCAAAGTTTACACCACGCCATTTCCAACCACCCGCCACCATACAG
CAACGTCCTCAAGCTACTACTCAAACGCCTCTATTATACCCACATTACCG
CCAGCAAGCAATACACAGAAAGTTATGGTCACGACACCTGCATATTATTC
ACCGACAAATTCAACACTATTAACTTCAATTTCATTCACAAATGCAACTA
ATTTCCAATCGACACCTCAAAACATCACTAATACATCATCAATAGTTtca
tcaaccaatcagaatccATCAAGTCCATCAGTAGCCAATCAGGGCTCATT
ATTGAATCAAGCAACGTCCAATCAGAATCTGTCGCTACCGGCAACTGCAT
CTCACAACTCAAAACAACCAGTAGAATTTCCACCAGCTGATGACAATAAA
CCAACAACATCCTCGTCAAAAACAGAAGCAAGACTGACCACCAGTAATAA
AACTAGCACTGACTCTTTAGCGTCTAACAACCAACCAACAATGAACAGTT
TAGCAAATGTGACATCAAACAAGTCCACACCAAGTGGTTTTGTAGATAGC
AAGAATAATTTGTTACCAACACTGACTGTTGAAAAGGTTTTACACCCGTC
ATTAAGAGCAAACATGACGAACAATGATGACtgaAATGGTGCTTGGAGCC
ATTGGTCGGAATTTTCACCTTGCTCAGTCACGTGTTCATATGGAACACGT
GTTCGATTACGCACGTGTACTGAACCAGTTCCCGCCAATAATGGTGCTGA
TTGTACGGGACCGAGAGTGGAAGATGAAGAATGCTATATGGGGCCTTGCA
AAGTTTACACCACGCCATTTCCAACCACCCGCCACCATACAGCAACGTCC
TCAAGCTACTACTCAAACGCCTCTATTATACCCACATTACCGCCAGCAAG
CAATACACAGAAAGTTATGGTCACGACACCTGCATATTATTCACCGACAA
ATTCAACACTATTAACTTCAATTTCATTCACAAATGCAACTAATTTCCAA
TCGACACCTCAAAACATCACTAATACATCATCAATAGTTtcatcaaccaa
tcagaatccATCAAGTCCATCAGTAGCCAATCAGGGCTCATTATTGAATC
AAGCAACGTCCAATCAGAATCTGTCGCTACCGGCAACTGCATCTCACAAC
TCAAAACAACCAGTAGAATTTCCACCAGCTGATGACAATAAACCAACAAC
ATCCTCGTCAAAAACAGAAGCAAGACTGACCACCAGTAATAAAACTAGCA
CTGACTCTTTAGCGTCTAACAACCAACCAACAATGAACAGTTTAGCAAAT
GTGACATCAAACAAGTCCACACCAAGTGGTTTTGTAGATAGCAAGAATAA
TTTGTTACCAACACTGACTGTTGAAAAGGTTTTACACCCGTCATTAAGAG
CAAACATGACGAACAATGATGACtgaAATGGTGCTTGGAGCCATTGGTCG
GAATTTTCACCTTGCTCAGTCACGTGTTCATATGGAACACGTGTTCGATT
ACGCACGTGTACTGAACCAGTTCCCGCCAATAATGGTGCTGATTGTACGG
GACCGAGAGTGGAAGATGAAGAATGCTATATGGGGCCTTGCAAAGTTTAC
ACCACGCCATTTCCAACCACCCGCCACCATACAGCAACGTCCTCAAGCTA
CTACTCAAACGCCTCTATTATACCCACATTACCGCCAGCAAGCAATACAC
AGAAAGTTATGGTCACGACACCTGCATATTATTCACCGACAAATTCAACA
CTATTAACTTCAATTTCATTCACAAATGCAACTAATTTCCAATCGACACC
TCAAAACATCACTAATACATCATCAATAGTTtcatcaaccaatcagaatc
cATCAAGTCCATCAGTAGCCAATCAGGGCTCATTATTGAATCAAGCAACG
TCCAATCAGAATCTGTCGCTACCGGCAACTGCATCTCACAACTCAAAACA
ACCAGTAGAATTTCCACCAGCTGATGACAATAAACCAACAACATCCTCGT
CAAAAACAGAAGCAAGACTGACCACCAGTAATAAAACTAGCACTGACTCT
TTAGCGTCTAACAACCAACCAACAATGAACAGTTTAGCAAATGTGACATC
AAACAAGTCCACACCAAGTGGTTTTGTAGATAGCAAGAATAATTTGTTAC
CAACACTGACTGTTGAAAAGGTTTTACACCCGTCATTAAGAGCAAACATG
ACGAACAATGATGACtga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11033MSTRG.11033Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11033.4.p1.exon1MSTRG.11033.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11033.4.p1.exon2MSTRG.11033.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11033.4.p1.exon3MSTRG.11033.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11033.4.p1.exon4MSTRG.11033.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11033.4.p1.exon5MSTRG.11033.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11033.4.p1.exon6MSTRG.11033.4.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11033.4.p1.exon7MSTRG.11033.4.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11033.4.p1.exon8MSTRG.11033.4.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11033.4.p1MSTRG.11033.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078_pilongenomesc0000078_pilon:1446221..1452552 +