MSTRG.11028.3.p1 (mRNA) -

Overview
NameMSTRG.11028.3.p1
Unique NameMSTRG.11028.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:1281843..1286273-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11028.3.p1 ID=MSTRG.11028.3.p1|Name=MSTRG.11028.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4431bp|location=Sequence derived from alignment at sc0000078_pilon:1281843..1286273- (Clytia hemisphaerica_ch_hm2_pilon)
TCAAAACGCAGTTAAAAGAGAAGAAGTCAGTTCAAGATTTCACAGTAGGA
GAATCGGTTATCCAAGTCAAGAAACTATACTTACAACGAAATAAAATAGA
ATAATGGACAGTCAACAACCCAGTACTGTTCAATTAAGCGTCGGCTCGCC
AGGAAGTTTAGCAAAAGCAGTTCTAGTAAACAGTGCTGCAGTTCTAGTTA
ACAGTACTATCGCAATCGATCTTCAAAAAGCAGCTGCGCAAAAAGCCGTT
CAAGAGGACAGTGATGGTGATTGTAATGCAGCTACCACAAGTCAGCATTC
AACATTGTGTGATGCTTACGAGCTCAAATATTCAAAAGTGCTTAAAGATT
ATGAAAACACACAGGAGGTATGAATTTACTATAAAGTTTTTGTTGTTCTT
GGCTTTGTTACCGTAACTTGTCAGAGATATCAAACCATTTTAGATACAGT
CAAAGTTAAAGACCCGGGGGGGGGGTACTAGGGTTAGTGAATGAGGGGTA
TGTGCGGACGGGACCTCCGAAAACCGACCCTTAGAGAGACCAAATTTTAG
TGAAAAAGTGACCCTTAGAAAGACTTTTTCGAAAAATTTTCTCTGATTTT
CAAAAATTTCCTACCCTTAGTGAGACTTTTTTGTAATTTCTTCTCTCAAA
ATCAAAATTTTTTTCTAAAAATCGTGATTTTCCCACCCTTAGAGAGACTA
CTTTGAAATTTCCTGATTTTTGTAACCCTTAGAGAGACTTTGAAAGGTGA
AAAACCTGACCCTTACCGTCCGCACATACCCAGCACCTATTTTTGCCTAA
GTACTCCCCCCGGGGTTTAAGAGTACATGATTTCCATGTGTCCCTTGATT
GAGAGTGTGCATAATCAAATACTGTTTTTATACAGCGTATAAATAAATGA
TTTGTAGACTTAAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATC
AGATACATAATTTCGTATCAGGAAAGTGTCTGCCTATTGTTATGTTATGC
TGATATAAGCGAAGAAACGTTTTTCTTTTCCTCTATTAAACCAATCTTAC
TCCTCTACCGTGCCAATCCAATGTGTAAAAGTTTGTGAATTAAAATTGAT
GAGTAAGCAAACGGTATCACTCTCATTTTAAAAAACAAAACCTTTAATAC
TTCAATTTCAAAAACCTATTCAATCATTTCGAAAATTGAATATCTATTGA
TTGAGCAAAATTTCCGATGAGAAACGAACGAAGCTAACGAAGCTAACGAA
GTATGAAACGGTACAAAAATCTCTTAGATAACCAGCTTTGGTTTATTCTT
TAAGTGGTGCCAAAAAAATATTTTACACCAGACAAAGCAGAATAAGCAAA
AGATTTTGTGGGCTCGTACGACACCGAAAGGGGAGAAAGTCGTTCTTTCT
TTTGTTTGAAAATGATGTGTAAGCAAATGGTACGGAGATACGTCCAGGCA
CGACACAACGGGTACGGCAGGTACGGCGGATGCATAAAATCACTATAAAA
TCGCTTAAAATTTTTTTCATTAGCCGTACCAGATGTAAAAAGCTTCCATT
GTACCTGACGTTAATTGATGACCTTTAACAACGTAAATTTTCTGAAAATC
GTTTTAGCAACTGCAATACTACAAAGGTGAAGCAAAGTCACAAACTTTAT
TAGCAAAGACAGTAAAAGATGAATTAGCAGAAGCGATAGCTGAAAAAGAC
AAAGCTAAACAAGAGAGAATTGAAGTTTTAAAACAATATGACTCATTCCT
TGAAGAACATGAACGGAAATTAAAGGTAAGATTTTATCACAGTTGATACT
CTCTAACTCGACGTTCTACTATTCGATGCGCTCCATATGTATGTGTGTTT
TTCTGCGACGGAGACGGCAAGGTTCTAATTTGTCTACATTCTTTACTGAC
TAAAATGACGACGGTAAATCAGCACTTTTACCGTCCTTAATTTTGCGGGT
CAACACTGCGGGTTATTCCAAATCACTTCAGTCACTTACCGTCCTCAAAA
GTGCAAATACATAAAATCGCTATTATTGAAAGTCATTGTCAACAAGAAAA
CTCTCATACTAATTAATACGCTCCATTAGTCGATAAAAATCCAATTCCCC
TTGAAAATCGAATTAGAGAGCATCGATAGTATATCGTGTAAAAAGAAGGC
ATACAAAAGCGTAATAAGAAATGGACACGTCGTTCATTCATGATATTTAT
GACGTGATGTTTTATACGGAGAAACCCAGAATAGCCCGGGCGCTTACTAC
TAATTTTATTGTTCAAATTCAAAATTGGTGACAAACACCCCTTCTTTTTC
GGGTGTTTCCGTATAAAAGATTACGCAATGAATATCATAAATTAAAATAT
ATATTGGAAATTTATCGTGGCTTGGATCACGAGATTTACGTTTGGCTTTA
CGTAAATCTTGTTATCCAAGTCACGATAAATTTCCAATATGAATATCACT
GGGACGATATAGTCAAACTTATTTAGATCATAAATTGTAGTTCGTGTATG
AGATTTCAGTTCAGTTTATTGTTTACAGATAGGTGTCCGGGCCAACGTTC
GTTCGTACGTTTCAACGAAGTAAAATAGTTAGCCTCGTATAAGAGCAGCA
CAAGTAGTGATAGTCTCGACTGCTCAGGTACATATTTGAGAAAAAGTAAA
ACCCAAGATCTCCTACCAACCTGACGAAGAAAAAGAAATTCTGAACTTCA
ACACAGTCATAGAATGTTACAAAATTAAAGAGTAAAGCAAAAACTTAGTT
TATTTGATTGGTTGATTTTTGGTCTCTTATTAGGTTTTTGTACAAGAGAA
AGATAAAGAAGTTGAAGATCTACAAGAGAAAACTAAAAACCAAGAAGAAA
CTATCAAATTACAAGTAAGTTATAATACTCAGAAGTGTCAGCGTGACAGT
CTATACTTTGGTTGATGGTCATTGATAAACCTTGATTGCTACACAGGCGA
TTGAGGGTTCGCTTCCCACTCACAGCGGTTCAATTGGCAAGTGAACGAAC
CTTCGCCCAGGTCAACCAATGCGCATATGGTCTTAAAAACGTCAAAAAAG
TGTAAATTTCCGAAATTCAGTCTCTCACAGGGTCGATTTTCGAGCTTTTG
TAAGGACAGACACACCCACCCCTCACCAGGACACTCATAATTGAAATCGT
CTGTATTTGTAAGTAAATGGGTCTCAAAACCTTCTACAACTCATCTAAAA
TAGAAAGTTGAAATCTCGTATTAGCTATTTATATTTATACACGGGGTTAG
TTACATTTAGCATCGTCAAAGTACTTAATCATAGATCAACTATTTTACAC
TTGATATCCAACTTTTTCAGAAGCAACAGATTACAGAACAAGATTCGAAC
ATTGCAGAAGCACAAAAGAAAATTGGTGTCTTTGAAAGAAAGATTGGTTA
TAAAGAAAAAACCATGGTAAGTTTGTGAGCCTCCCTTAAAGTATTTGAGA
TTAAAAAAAAATTAAATTAAAACCTATTCTAAGTTAAGCGAAAGTGGATA
ATTATACAATTCGTGATCTTTATTCCATGGTAACCATTAACTCGATCAAT
AACTCAACCAATAACTCGACCAATAATTCAACCAATAACTTACTGAATGT
CTGTTGTTAGTAAACCAAGATCCATTCTAAAACCTGGTGATGCTCTTAAA
TTCTGTATTTGCTCTCCCTGGTCTAGTGAACATAGAAATATGATCAGACT
CTCTCGATCGCGTCACATGAACATGAAGCTCAAACAACATTTAATCATTT
TACATTTTTTCATTTTATAGAAAACATTGCAAAATGAGACTGTTTTCCAA
AACAACCAAATCGCCAAATTGAAAGAAACCATCGAAAAGTTGCAACAAGA
ACAAGTATGTTTATAACCAAAATTTAAAAAATACCTATCATATAGAACAA
AAATATCCCAGGGATACTAAAGCTGGTCCAGGCGTCTGAATAGTATTACT
CTGCAAATTGACGGAGATTTGCGTAAAAAATTAACCCTTGCGTAAAAAAT
AACCCTGGCGAAAAATAACCAAAAATATTTTACACAGTTATCTAATTTTT
TGCAAATTTTGCTGAATAAGGCAATCTAAATCAATTTTTGCGATCCTACC
TGAGCATATTCCAGTACCGTTTTCGCATCTGTACCCCTCCCAAAAGAACA
ACCAAATCAAAACCATCCACTTTCTTTTTGTAGAAATCACTTCATAACAA
CATCACATCTTTACAACAAAAACAAAAATCTAAGAAATGGTATCAACCAC
TCATGTTCTGGAAAAAATTTACAAGCTGTGGTGGAGCAAGACAACGCCCA
TGTCAAACGAACAACGAGACTGAGTTTCCAGATATTGAAATTAATGTTGA
ATTTGTTGATGTTGCAGGTGAAACAAGCATCACCACAATTTAAATTAAAA
CAATTTATTTTTTTCGTTTTGTATATCATTT

Coding sequence (CDS) from alignment at sc0000078_pilon:1281843..1286273-

>MSTRG.11028.3.p1 ID=MSTRG.11028.3.p1|Name=MSTRG.11028.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5418bp|location=Sequence derived from alignment at sc0000078_pilon:1281843..1286273- (Clytia hemisphaerica_ch_hm2_pilon)
AAATCACTTCATAACAACATCACATCTTTACAACAAAAACAAAAATCTAA
GAAATGGTATCAACCACTCATGTTCTGGAAAAAATTTACAAGCTGTGGTG
GAGCAAGACAACGCCCATGTCAAACGAACAACGAGACTGAGTTTCCAGAT
ATTGAAATTAATGTTGAATTTGTTGATGTTGCAGGTGAAACAAGCATCAC
CACAATTTAAAAAACATTGCAAAATGAGACTGTTTTCCAAAACAACCAAA
TCGCCAAATTGAAAGAAACCATCGAAAAGTTGCAACAAGAACAAAAGCAA
CAGATTACAGAACAAGATTCGAACATTGCAGAAGCACAAAAGAAAATTGG
TGTCTTTGAAAGAAAGATTGGTTATAAAGAAAAAACCATGGTTTTTGTAC
AAGAGAAAGATAAAGAAGTTGAAGATCTACAAGAGAAAACTAAAAACCAA
GAAGAAACTATCAAATTACAACAACTGCAATACTACAAAGGTGAAGCAAA
GTCACAAACTTTATTAGCAAAGACAGTAAAAGATGAATTAGCAGAAGCGA
TAGCTGAAAAAGACAAAGCTAAACAAGAGAGAATTGAAGTTTTAAAACAA
TATGACTCATTCCTTGAAGAACATGAACGGAAATTAAAGATGGACAGTCA
ACAACCCAGTACTGTTCAATTAAGCGTCGGCTCGCCAGGAAGTTTAGCAA
AAGCAGTTCTAGTAAACAGTGCTGCAGTTCTAGTTAACAGTACTATCGCA
ATCGATCTTCAAAAAGCAGCTGCGCAAAAAGCCGTTCAAGAGGACAGTGA
TGGTGATTGTAATGCAGCTACCACAAGTCAGCATTCAACATTGTGTGATG
CTTACGAGCTCAAATATTCAAAAGTGCTTAAAGATTATGAAAACACACAG
GAGAAATCACTTCATAACAACATCACATCTTTACAACAAAAACAAAAATC
TAAGAAATGGTATCAACCACTCATGTTCTGGAAAAAATTTACAAGCTGTG
GTGGAGCAAGACAACGCCCATGTCAAACGAACAACGAGACTGAGTTTCCA
GATATTGAAATTAATGTTGAATTTGTTGATGTTGCAGGTGAAACAAGCAT
CACCACAATTTAAAAAACATTGCAAAATGAGACTGTTTTCCAAAACAACC
AAATCGCCAAATTGAAAGAAACCATCGAAAAGTTGCAACAAGAACAAAAG
CAACAGATTACAGAACAAGATTCGAACATTGCAGAAGCACAAAAGAAAAT
TGGTGTCTTTGAAAGAAAGATTGGTTATAAAGAAAAAACCATGGTTTTTG
TACAAGAGAAAGATAAAGAAGTTGAAGATCTACAAGAGAAAACTAAAAAC
CAAGAAGAAACTATCAAATTACAACAACTGCAATACTACAAAGGTGAAGC
AAAGTCACAAACTTTATTAGCAAAGACAGTAAAAGATGAATTAGCAGAAG
CGATAGCTGAAAAAGACAAAGCTAAACAAGAGAGAATTGAAGTTTTAAAA
CAATATGACTCATTCCTTGAAGAACATGAACGGAAATTAAAGATGGACAG
TCAACAACCCAGTACTGTTCAATTAAGCGTCGGCTCGCCAGGAAGTTTAG
CAAAAGCAGTTCTAGTAAACAGTGCTGCAGTTCTAGTTAACAGTACTATC
GCAATCGATCTTCAAAAAGCAGCTGCGCAAAAAGCCGTTCAAGAGGACAG
TGATGGTGATTGTAATGCAGCTACCACAAGTCAGCATTCAACATTGTGTG
ATGCTTACGAGCTCAAATATTCAAAAGTGCTTAAAGATTATGAAAACACA
CAGGAGAAATCACTTCATAACAACATCACATCTTTACAACAAAAACAAAA
ATCTAAGAAATGGTATCAACCACTCATGTTCTGGAAAAAATTTACAAGCT
GTGGTGGAGCAAGACAACGCCCATGTCAAACGAACAACGAGACTGAGTTT
CCAGATATTGAAATTAATGTTGAATTTGTTGATGTTGCAGGTGAAACAAG
CATCACCACAATTTAAAAAACATTGCAAAATGAGACTGTTTTCCAAAACA
ACCAAATCGCCAAATTGAAAGAAACCATCGAAAAGTTGCAACAAGAACAA
AAGCAACAGATTACAGAACAAGATTCGAACATTGCAGAAGCACAAAAGAA
AATTGGTGTCTTTGAAAGAAAGATTGGTTATAAAGAAAAAACCATGGTTT
TTGTACAAGAGAAAGATAAAGAAGTTGAAGATCTACAAGAGAAAACTAAA
AACCAAGAAGAAACTATCAAATTACAACAACTGCAATACTACAAAGGTGA
AGCAAAGTCACAAACTTTATTAGCAAAGACAGTAAAAGATGAATTAGCAG
AAGCGATAGCTGAAAAAGACAAAGCTAAACAAGAGAGAATTGAAGTTTTA
AAACAATATGACTCATTCCTTGAAGAACATGAACGGAAATTAAAGATGGA
CAGTCAACAACCCAGTACTGTTCAATTAAGCGTCGGCTCGCCAGGAAGTT
TAGCAAAAGCAGTTCTAGTAAACAGTGCTGCAGTTCTAGTTAACAGTACT
ATCGCAATCGATCTTCAAAAAGCAGCTGCGCAAAAAGCCGTTCAAGAGGA
CAGTGATGGTGATTGTAATGCAGCTACCACAAGTCAGCATTCAACATTGT
GTGATGCTTACGAGCTCAAATATTCAAAAGTGCTTAAAGATTATGAAAAC
ACACAGGAGAAATCACTTCATAACAACATCACATCTTTACAACAAAAACA
AAAATCTAAGAAATGGTATCAACCACTCATGTTCTGGAAAAAATTTACAA
GCTGTGGTGGAGCAAGACAACGCCCATGTCAAACGAACAACGAGACTGAG
TTTCCAGATATTGAAATTAATGTTGAATTTGTTGATGTTGCAGGTGAAAC
AAGCATCACCACAATTTAAAAAACATTGCAAAATGAGACTGTTTTCCAAA
ACAACCAAATCGCCAAATTGAAAGAAACCATCGAAAAGTTGCAACAAGAA
CAAAAGCAACAGATTACAGAACAAGATTCGAACATTGCAGAAGCACAAAA
GAAAATTGGTGTCTTTGAAAGAAAGATTGGTTATAAAGAAAAAACCATGG
TTTTTGTACAAGAGAAAGATAAAGAAGTTGAAGATCTACAAGAGAAAACT
AAAAACCAAGAAGAAACTATCAAATTACAACAACTGCAATACTACAAAGG
TGAAGCAAAGTCACAAACTTTATTAGCAAAGACAGTAAAAGATGAATTAG
CAGAAGCGATAGCTGAAAAAGACAAAGCTAAACAAGAGAGAATTGAAGTT
TTAAAACAATATGACTCATTCCTTGAAGAACATGAACGGAAATTAAAGAT
GGACAGTCAACAACCCAGTACTGTTCAATTAAGCGTCGGCTCGCCAGGAA
GTTTAGCAAAAGCAGTTCTAGTAAACAGTGCTGCAGTTCTAGTTAACAGT
ACTATCGCAATCGATCTTCAAAAAGCAGCTGCGCAAAAAGCCGTTCAAGA
GGACAGTGATGGTGATTGTAATGCAGCTACCACAAGTCAGCATTCAACAT
TGTGTGATGCTTACGAGCTCAAATATTCAAAAGTGCTTAAAGATTATGAA
AACACACAGGAGAAATCACTTCATAACAACATCACATCTTTACAACAAAA
ACAAAAATCTAAGAAATGGTATCAACCACTCATGTTCTGGAAAAAATTTA
CAAGCTGTGGTGGAGCAAGACAACGCCCATGTCAAACGAACAACGAGACT
GAGTTTCCAGATATTGAAATTAATGTTGAATTTGTTGATGTTGCAGGTGA
AACAAGCATCACCACAATTTAAAAAACATTGCAAAATGAGACTGTTTTCC
AAAACAACCAAATCGCCAAATTGAAAGAAACCATCGAAAAGTTGCAACAA
GAACAAAAGCAACAGATTACAGAACAAGATTCGAACATTGCAGAAGCACA
AAAGAAAATTGGTGTCTTTGAAAGAAAGATTGGTTATAAAGAAAAAACCA
TGGTTTTTGTACAAGAGAAAGATAAAGAAGTTGAAGATCTACAAGAGAAA
ACTAAAAACCAAGAAGAAACTATCAAATTACAACAACTGCAATACTACAA
AGGTGAAGCAAAGTCACAAACTTTATTAGCAAAGACAGTAAAAGATGAAT
TAGCAGAAGCGATAGCTGAAAAAGACAAAGCTAAACAAGAGAGAATTGAA
GTTTTAAAACAATATGACTCATTCCTTGAAGAACATGAACGGAAATTAAA
GATGGACAGTCAACAACCCAGTACTGTTCAATTAAGCGTCGGCTCGCCAG
GAAGTTTAGCAAAAGCAGTTCTAGTAAACAGTGCTGCAGTTCTAGTTAAC
AGTACTATCGCAATCGATCTTCAAAAAGCAGCTGCGCAAAAAGCCGTTCA
AGAGGACAGTGATGGTGATTGTAATGCAGCTACCACAAGTCAGCATTCAA
CATTGTGTGATGCTTACGAGCTCAAATATTCAAAAGTGCTTAAAGATTAT
GAAAACACACAGGAGAAATCACTTCATAACAACATCACATCTTTACAACA
AAAACAAAAATCTAAGAAATGGTATCAACCACTCATGTTCTGGAAAAAAT
TTACAAGCTGTGGTGGAGCAAGACAACGCCCATGTCAAACGAACAACGAG
ACTGAGTTTCCAGATATTGAAATTAATGTTGAATTTGTTGATGTTGCAGG
TGAAACAAGCATCACCACAATTTAAAAAACATTGCAAAATGAGACTGTTT
TCCAAAACAACCAAATCGCCAAATTGAAAGAAACCATCGAAAAGTTGCAA
CAAGAACAAAAGCAACAGATTACAGAACAAGATTCGAACATTGCAGAAGC
ACAAAAGAAAATTGGTGTCTTTGAAAGAAAGATTGGTTATAAAGAAAAAA
CCATGGTTTTTGTACAAGAGAAAGATAAAGAAGTTGAAGATCTACAAGAG
AAAACTAAAAACCAAGAAGAAACTATCAAATTACAACAACTGCAATACTA
CAAAGGTGAAGCAAAGTCACAAACTTTATTAGCAAAGACAGTAAAAGATG
AATTAGCAGAAGCGATAGCTGAAAAAGACAAAGCTAAACAAGAGAGAATT
GAAGTTTTAAAACAATATGACTCATTCCTTGAAGAACATGAACGGAAATT
AAAGATGGACAGTCAACAACCCAGTACTGTTCAATTAAGCGTCGGCTCGC
CAGGAAGTTTAGCAAAAGCAGTTCTAGTAAACAGTGCTGCAGTTCTAGTT
AACAGTACTATCGCAATCGATCTTCAAAAAGCAGCTGCGCAAAAAGCCGT
TCAAGAGGACAGTGATGGTGATTGTAATGCAGCTACCACAAGTCAGCATT
CAACATTGTGTGATGCTTACGAGCTCAAATATTCAAAAGTGCTTAAAGAT
TATGAAAACACACAGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11028MSTRG.11028Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11028.3.p1MSTRG.11028.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11028.3.p1.exon6MSTRG.11028.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11028.3.p1.exon5MSTRG.11028.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11028.3.p1.exon4MSTRG.11028.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11028.3.p1.exon3MSTRG.11028.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11028.3.p1.exon2MSTRG.11028.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11028.3.p1.exon1MSTRG.11028.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078_pilongenomesc0000078_pilon:1281843..1286273 -