MSTRG.11019.4.p2 (mRNA) -

Overview
NameMSTRG.11019.4.p2
Unique NameMSTRG.11019.4.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:1088097..1097529-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11019.4.p2 ID=MSTRG.11019.4.p2|Name=MSTRG.11019.4.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9433bp|location=Sequence derived from alignment at sc0000078_pilon:1088097..1097529- (Clytia hemisphaerica_ch_hm2_pilon)
TCAAGATCATCTCGAAAATCATATCAAATCTTTGTATAAATACCGACTAA
CTGTTGTTACTGAATCAGAGTAAAAATGAAGTACCACATTATAGTGTTAT
CGTGTTTGCTATGGATAAAATTAACAGGTAATTACAATTTTTTTGTACAG
TAGAGTCTCGAACCTTTATAATTCGAGTGTCTCCTTAACTCGAATAAGCT
CCCTCGTCCCTTACCGTCGTTTCGTATAAGATTCCCATTTCCTCATTAAG
ATTCTCGTTATTTTTCCGGGATAACTAGCACGAGATCAGAAAGGGTTTGC
TTGTAAAGGTACGGAAGGTGTTGAAGTTACTCACGAAATTGCCCAATAGT
CCAGGGAAAGTGTGCTAAAAATGAAAACAATTGTCCATTTTGAGATACAT
ACCATGATGATTTTTAGAATCAGTATGAAAAAACCTTTCCAACGGTATAT
AATATCACATGTTTTGGAACAAAAATAAAAAAGATTTTCCGGCATGCAGA
CTGGTCTGTAAATTACTTCCGTAGCTCATAACTCGGACCCAGTCCATTTT
CAGATATATGTTGTGATGTTTTTTAGAATCAGTGTGAGAAAACCTTTCCA
ACGATATATTATATGACATGCTTTGAAGCTTTGAATTTTTTTCTTGCCTG
GGAGGCATTCTGGTCTGTAAAATACACAAACAGGTGTTCTGGAAGTGGGT
CAGAGGCTTAAAATGTTTCTTACCCCCTAAGGTACCACTGTACGAAATTT
CATGCTTTCTAGTCAAAAACGCACAATTGATGCACACTTTCCCTGGACTA
TAACTTTCCGAAGCTTAATTTTCAACTACCCAAAGAAAAGCTAGAAAAGT
GGAAAAGGAATCTTAGTACGGAAATGGGAATCTTATACAAAACAACGGTA
TAAACCTTACTCCGTAAGTAGAATTTTCCTAACTCGAACAAATTTGTGTT
CCCCTTGCGACTTCGAGTTATGGAGACTCGACTGTATTATATATTTTCTA
AGTGCTATGGAATATAGTTTTTACAGTCTTCACTATTATAAATACTTGGA
AGTATTCTTAACTTTAATCTCTCTGTCTTTATGTTTCAAATCCTTTAAAA
GGCAGTCTGGAGACTTTGGAAATCGTCAGATTCGGATGAAATTTAATTAA
GCTTGCTCCTTGTGTGCCTTTTTTCATTTTTTCAAAAATTTTTATCTTTA
AGGCCTAGAACGATCTTTTCACTATACCTTCGATTTAGCCCCCGTTTGTC
TGTGTACAAAATAATTTTTTTTTTTAACTTTCAGAATGTTTTCAATGGGA
CAATTCAGTTAGTGATTCATCCGTGTATGCTAACAACTCAGGCTCCGCAA
TTATCAAGTTCAGATATAGCTATGGAGCTGAAGACCGTTCAAGTGTTAAT
ATTACATGTGGAATATGGAATACAGATCAAACCAAAATTATTCCCATGGT
GACTAAAATTGGTAACCAACCTGCACAAAGAAGAAGTGGAGTTACTGGCG
ATGTTTTAGGGAATAATGCAGCTCTTTATACAGAATCTACACAACCAACT
GTTATTGGGTTAAGATTGAGTAATATTGCAAAGACCTTCCCAACTCAGTA
CCGTTGCGATGCATCTTTTACTAAAGCCGATGGTGTGGCTGATAGTGTCC
TAAGTGAACGTGTCATCCTTAATGTCTTAGGTATATATTTTTAAATACAT
CGCCGTGTCAATTCAAGACAGACTTAAGTCCATTTTTTCGAAAATTGACC
ACAACTCCCCTTTTTCAGCATGCACGCTTTCCAAAAACGGCCTCAAATCC
ACAGAGTTCTAATGGTAAAGAGGTGTATTTTGCAATTCAAAAAAAAGATA
TCAACGATAAACAGCCTCAGGTCCTAAATTTTAGGCCAAATTTTATTTTC
TATGAAGCATTGACATGGAATGTGTAGCCTTAAGTCCAAGTGTTTTGAAT
TGACAAGGCGATATGGTCTTTCCTCAATAGGATATACAGTAACAGTGTTA
GTAAAAGTACACATTTTTTTCTTAAGAAAAATTATTGAAGCCTTCGGGTA
TTCTTAGCTTTTTAAGTTCTCAAAATGTTATTATTTTCACCATTTTGTGA
GAATTTTTGTTCGATTTCATAAAAAATTGGTGTTTTAGAGTTTACAAAGA
CTTGAAATGTTCTTAATTTGTTCTTAATATTTTGATTAGCGAAGCCATAT
GTTCTTATCAAATCTATTCTGATAAAAAAGCGTGTATTGATATAGACGAT
GTTATTGTCCGTTACAGTGATAGTAAAGGCGGGAAAATGCGGCGGTATGC
GGAAAAAAAATCGGTGGGAGAGTTTTGAAGACTGGCAACTCTACCGACTT
TAAACTCTTTTCCGCAAAAAACTCGTTTGCGAATTTTCTTCGGTTTTGGG
TGGCCTTTTTTCTTAGATAGTGATTCGTCTTAGACTATAGCATAGTCTAG
CGTCTTAGACTGTAGCATAGTCTAGTATTAATAGTGAGACTTGCCGACTT
AAAAGGAAAGATACATTTTAATTTTGACTGTCATGTTTAGCAATTTTGAC
TCAATGGGTAAAAGCCATGACATAAAGCAAGAAATTACTTTCAAAAAAGT
GCTTTGAAAGTTCAAAAGTTGAACTACTCAAAAAATGTTAAAAAGAAAAG
CTACTGTACTGTAATTATAGGAAGGCCAATTTTTTACTTTCGACCAATAT
TCAATTAATTTGTCTGTTGAACCATGACAATTGATTTTTGTCAACTTCAA
ACAAAATTGAAAAATCAAAATGTGGGCTTAAATTTTTAAGATACTCCAAC
GATAAATTGAATGCTTTAAGGCTGGGGAACCAAAAGTTTTTTTCAACAAT
GCAACATGCTTCCATCCCACCAACCTGAAACGCTTTCTCGTGTCTCCACC
CCATTTTTCATTTAATAACATTTGTGCTTCTCTCACTTTTAGCCCAGGGA
CAAAATCAGCGTGTCTTTTGGATATTTCCCTTACTTTTTGTCAATTTTGT
CCCATGAAACAAAAAAAGAAACCATGAGACACGCACCTTTTTCTTGTGTT
GGTGGGATGGAGCATGTTGCATTGCACCAACGCAAAAAAAAGGTGCGTGC
CCACAAGGTCATCGATTTTTGGATTCGTAATAATCCATCCACCTTTATTA
TTTTATATTTTCAGAACGTCCAAAATTTACAAACTGTTTGCAAAACATAC
AATCCAAAGAAACTGTGGCTGGCAACTCACTCGATATAACATGCAAAGTC
TCTGGCAATCCAACTCCTAACTTGAAATGTTCATTGTTGGCTTTTGATAG
AGAAATTTTAAATACTTTCCCTAAAAAAAATAGTGGTCGAAATCTCGAGG
AAGATGGTAATGATTTACTCACTTTTTTATAGTAGTTGAGTCCCCTTAAT
TCGAACAAGCACGGGGAGCTGGAATTTGCACTAAGTTTACGCTAAAACTA
CTTTTGAGTATTCTTTAAAAGAACGAGACAAAGAAAGAAATTCTATACCT
TATCGGGGAAAAAAAATTTTGAGGGGGTGATGAAATTTTCCCCCGACGAA
TTTTTTCCCCGATATTTTATCACCCGACCAAAACTTTTACCCGATTTTTT
TATCCCCGACCAAAACTTTTACCCGATTCTTTAAACCCCAACAAAAATCA
AATTCTAATCAAATTTTTTACACCTTTATTAACCGAAATTAGTGCTTTAA
ACGTCGAATTACAAGATCTTTTTTCGAGCTAGTGAAGTGAAGAAAACCAT
TTCATTTGGACAATTTAGCTGGGTGAAAGTCACTAAATTGTAAATTTCGT
CGGGGAAAAGTGACGAATTTGAAATTTTGGTCGGGGGAAAGTGACGAAAA
TGCCTCTAGGTGACGAAATTTTTCCCCGACGAAAAAAAACCCGACTAAAT
AAAACTCCGACATTTTTTTCCCCGATAAGGTATATAATTATATGGTTGAT
TACATTTAGCTTAGATTTGTAAGGGACAAGCGGGCGGATAAATCCGTAAT
AACCCCGCTTTTTTGTAATCGCCCTGATGTAAACAAGAATTTCTATTGGT
TGAAAAGTATCGTACGATATCTTCAGAGCATTTTGATTAACAAAGTATCG
CACAAAATTTTTAAGCAAATCTAGATAAGAGTGTCAATCAAATGTTGTTT
ATAGTTTCGAATGTTTTTTATAAGTTTCAAAAAAAAAACAACAAAAAAAA
CGATTGATTGTTCTTCAATTCTTTTTTTGACCATATAATTAACGCGGAAT
AACATGGTTTGGAGGGTGATTTTGTATTAATAACCCCTCGTTTCATTGAA
AACATTTCAAAATAGCCCTCACTACGTTCGGGTTATTACTAGTACATATA
ATATTTTCCTCGTCTTTAGTTATAATCAGGAATGGTTATCAACCAAGGGG
TCCCCCAGCGGTTTGCGTGAATGCGTGAAAATAGAAGAAAAAAGTGCGTG
AATGTGTGAATTGAAAAAAAACTTGCATGAACGTGAAAATCCATTTTCTA
ATAGCGCACCGCGCTGAATCTAAAAATAGATTTTATTTTTGACATAATCA
TTACTCTCAATTACACCTTTCCCGAGTTTATTTTGACTTTATGAAAAACA
CCATTCCAAAACCCTGCTCTACTTGCATTTGATTTAGAAAGATTCTACTA
GGAAAAAAATCGATAAACTTGGGAAAGGTGTATTGCATCGTTTGACAAAA
GATATATAACAGCTTGCACGTATCTTTAATTGAGCCGCGTTGAATTGTGT
GATTACAACTCGTACAAATGTCAAAAAAAGTGAAAAGTAATAATTATGAC
GTATGTGTTGCAGAGCGCTATTATGTGAATACGTGAATACGTTAATCTGC
CCTGTTTATAGGGTTAATACGTGAATTTCCCTTTTTCCACCAACTATGTA
CAAATTTCCGATTTTCTAAAAAATAAAATTATTGAAAAAATGTTGAAAAT
TTTTTTTTATCAACAATCAAATCCCTGGTGTAGTTTATCTACAGTATAGA
GTCGCTATTTTGCGTGGATAACCCAATAGTCCAGACTTTTTGTTAGGCTT
TCAACTGTTTTCACGAGCAGCACGGCCAGACGGCTCCCTATGAATGAACT
AAACGGAACATTGGAAGGAACGGGGTTTCGAACCGCGAACCTCTTGCTTG
TAGTGAAGACGCTTTAACCACTCGGTCATCGCTCCTCGAAGTTGTATGTC
ATTGAAATTCATATTTTCTTCATCTATTTTAGAACCTGGTATGCCATCAA
ACATCACAGCATCATTTTCAAATTTGCCGAAAGAGGCCCGTTTTGTTCGA
TGTTTTGCTTCCCAAACATTTACTGGGACTAATACGCTAGAGAGAAGATT
TACTATCTTACGTAAGTTATTGGAGGGTTTTCTTAAGTTTATTTATGTTT
ATTTAGTTTATTTAGTTTATCTACTATTCCAGGCCACTCATAACCCTTAT
TTAGACAGAAACTTTGTTGGTTAAAGTCCTCTAATAACGCGTTCGAGGGT
TATTTACTACTTTTGAATACTTAATATATATTGGTGAACAATATTAAAGG
TTTTTATGTATCGGTGGATATCGTGAGCGACGGTAAATGAAGTCAACGCA
AAACAAAGTCGATAGTTGATTTACGGCTCTATATCGCCTTTTTTCACCTA
AACAGACGACGGTATTATAGTCTTTTTACCGTCGTTGAGCAAAGTGGACG
TTGATTTTAGAGTTTTGTCAACTTTGCTTTATACCGTCTCCTTCGATTTA
TTTTGAATACATAAACTCGCTATAAGATTACCCGGAATGTATGAATAACA
TTTTAAGATTGTTAATGAGATTAGAAATTAATTGGCATTAAATGTTTTTT
CTTTATAAGCATTGTGCTTATAAACATATCTAGGCTCTGATATAAGAAAA
ATTTAAGCATATGCTCAGTCTACCTTGACCTTTCATTTTTAGATTTTTCC
CTAAAACTTTGCTTTAGGATATGAATTCTTCAAAGTATTTTTCAACCTTG
TCAATCTCTTGATCTAAGCATCTCCAAGCCAGCTTTTGGATTTTTGTAAA
AAAACATATATACCTCCCTAAGACTTGTGCTGGACACTCGTGGTTCTGCT
CAACTCACCTGCAAATGGAAATTATATTGCATCATCAATCTCCCAAATCG
TTTAAAGTTACCATATACTCTTATCAGACTTTTTTGTATATTTTTTTGTA
GATGGTAACCTACCCAAGCTTGCACACAACGTTGTTTCAACGTTAATCTA
ACGTTTTATAGACGTTGTGAACATAAGATAAACAACGTTGAAACAACGTT
GTGTGCAAGCTGGGTAGAGAGTTTACCTTCTGTTGCTTAGGGAGAAAAGC
CCTAACGTTTTCCCCTCTTTCTTTTAGACACACCTTTCCCACCAAAGAAT
TTCAGACAAGAAAACAGTCCTGATCGAACATCAATCACAGTCTCTTGGTT
ACCACTTACTGATGATGAATGGGGAGGTGCTAAAGACAGCTACAGTGTAG
CTTACTACATGATTGGTCAGGATGCAGGGTTGAATTTAACGACAAAGGAA
TTAGGACCTCAACCTTCAGAATTTGGCCAGGATGCAAACGTTTTTGTCTC
TAGAAAAGTGGGAGAAAAAGATGTGGAATTTTATTTCTATACTATCAAAG
GTTTAAATCCACAGGCTTTATGCACAGAACCGTTATGGAAAAGGAGATGA
TTCAATAAGGTTTTCTATGACACCTGGTGATAATCGTAAGTAAATGTTGT
TTCTACAAAGATTGTGCGTGTTTGCTTTCAACAAAGATCACCCTGATCTT
TGTTGAAACGGCATCACGCGGTAAAAGTGAGCGTAGGAGTTAGGTAAGCG
TAGGAAGAAATTTTGTCGGTGGGAACAACGGATTAGAATATAGGTGGATT
AAGAACTCATAGAAAACACTCCTCGTTAGGTTATCAAACTTTTTTACGAG
TTTGCTAGCAATTAAAACTTGATAAGTTGTAAAAAAGTTGTGAAAAATCA
TTACTTTCAACATTTTCATTGGTCATTACGTATCACGTGGTACATTTTAA
ATAAGAAAATGCACTTTTTTAGCCCTTTCTATCCAATGCAGAAATTAGCC
AAATAATTTGAAATTTATTTTCCTAATTCTAAATACAGTCTTCTTTCACC
AGTATGCAACCCATTCGTGACCCATCGATAGTTTCTTAGTTATAGACCAT
ACGTTAATTTTCACTTATCTGAAGATTGCCATTGACAAAAGATTAAAAAT
TTACATTAAAACTGGTCTAGCGTTTGTTGATGCTAAAACTTAAGTGCAGG
ATTTAAAATATTTGCAAAATCATCAAAATTGATCGAATCATAGGACAAAT
TCGTTTTCGAAACTGTATAAATTGGAAAATTGTTCTTATAAAAACAATGA
AAAAACTAAACGAGGAGTGCGCAGAGTCATTTACAGATTTTTCTTGTAAC
AATGAGAAGACAATGGATCTCTCTTGGGAGCAACGAGAGAAGTTAATCCA
CTTATTCTAATCCGTTGGTGGGAAGGGCTAAAAGCTGTTAATCAGCAGCC
TCTCACTAAAAGTTTGCTCGTTCTCCTACGCAGCTCCTATTCTAGCAAAC
GCCCGCCGCCTTTATGTTCCCGCCCTCTGACATGATTAATTAACAGACTA
GTTTGCTAGTCTAAGATCACCCTTTCGATATGCTACATTTTTTTTAAATA
TGGAAAGTCAACGTCAATACAATAAGAAACTCTGATAATCGACGCTCGAC
TACGCAATACGCACCTTTATTCGATAAAAACATAATTCCCCTTGAAAATC
GGATTAGAGAGGGTCAACTGTATTTTAATTCGTCCAAAACGGTGTACTCT
CATATTCTTAAACCCCTACCATCTAAACCGGATTCGCATTCTCAAGGTAT
ATCTCAATATAATCGGCAGATAAAACAATGGAGCCCACAATTTGGTTCTG
TTTTCACCTAATTAATTACGATCCCATTTTGTGACAAAGTAATGGAACTT
TCAAGCTTCGGTTTCAAGCTATGAAAGTTCGAACGTTTACATATTCTTTT
TCAGCCATTTCATCCGCCAATAACACAACCGCCAATAACACAACCGCCCA
TAACACAACCGCCAATAACACAACCGCCAATAACACAACCGCCCATAACA
CAACCGCCCATATCCCCACCGCCCATATCACCACCAATGCACCATCCACC
AATAGCACAACCGCCCATACCACCACCAATGCACCATCCACCAATAACAC
AATATTTGTCAATGCCACAGTAACAACTGACACCACCACAACGACCACAC
TATGTGATGATACTGACTCTGGTTCTATCGTTCTTTGCAATGACATTCGT
TGTATGATAATATGCAACTTGGTTTTGTTGTTAATGTTTTATCATTCTTC
ATAATAAAATTTGTGCGCAAGTCGAGCACTCTACTTGAATTCAACATACC
AAGTTATGGAGAAACTACATTTCGATTACTCCTACAAAAACATACCGATT
GAAACAATAATTTTTCACTACTTCAACTATGATAGCATGATAATATTTTA
TAACTAGCAATTAGCTTTCGCTATGATGCTCCCGATGACAGGCATTTGAC
AGTGATTGATTGAAATTCAGAAAAGGCGAAATGCCGGGATAGAAAGTCGC
ATATTATTGGTCTTTCCTAATTCAATCCATACTACTACATAATACTTGTA
CCAATGTTCCAATACTTAAAATTCTAAAACATGACACTAGAACATTCTTG
AAAACATTCTAATGTCTTAACAAAATACTTTAATAGGCGGGGGGGACGGA
ATAAAAATGTCCTGGTGGAAAATTTTTGGAACGGAGGTCAATACAGCATA
ATTAGGACAAAAGAGGGAATTTTCAAAAATATTTTCCCCGAAACTAATAA
GCGAGGGGTTGGATTAAAGCTAAGGGGACACGGAAACAATTTTTGTGCAA
TTGCAACAAAAACAAATTGTCGCAATCGCAATGAAATTTTACACCGTGTC
GTATAGGGCTAGCACACGAAACAAAATCATAAAAATGAAATCAAAGCAAC
TCCACCATTTTGAACTCATGTCTTGCGTGTTAAAAATGAGAAGATTATGT
CATAATTTGTTTTGAGTTGTATAAAAGAATTTGATTGGCTAAATGAAAAA
AAATGTTTCAAGGAATCTTCTCAAGGAGAGGGGACACGAGGGTTTTTGTA
TGATTCTCATTTGCAACATGAAAATTTTGTTGCAGAAACAAAAATAAAAT
TCAAATCGATTTGAATTTTATTTTTGTTTCAGCAACAAAAACTTTGAGCG
AAAAAAGTTGCCAATCAAAGAGATTTAACGTGGGGACACAGTGAAACACA
TTTATGCGATTGCAACAAAAAAATGTTTTTGTTGCAATCGCATAAAAATT
GTTTCCGTGTCCCCGTAGCTTAAGAATGTCCTA

Coding sequence (CDS) from alignment at sc0000078_pilon:1088097..1097529-

>MSTRG.11019.4.p2 ID=MSTRG.11019.4.p2|Name=MSTRG.11019.4.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=738bp|location=Sequence derived from alignment at sc0000078_pilon:1088097..1097529- (Clytia hemisphaerica_ch_hm2_pilon)
CCATTTCATCCGCCAATAACACAACCGCCAATAACACAACCGCCCATAAC
ACAACCGCCAATAACACAACCGCCAATAACACAACCGCCCATAACACAAC
CGCCCATATCCCCACCGCCCATATCACCACCAATGCACCATCCACCAATA
GCACAACCGCCCATACCACCACCAATGCACCATCCACCAATAACACAATA
TTTGTCAATGCCACAGTAACAACTGACACCACCACAACGACCACACTATG
TGATGATACTGACTCTGGTTCTATCGTTCTTTGCAATGACATTCGTTGTA
TGATAATATGCAACTTGGTTTTGTTGTTAATGTTTTATCATTCTTCATAA
ATGACACCTGGTGATAATCCCATTTCATCCGCCAATAACACAACCGCCAA
TAACACAACCGCCCATAACACAACCGCCAATAACACAACCGCCAATAACA
CAACCGCCCATAACACAACCGCCCATATCCCCACCGCCCATATCACCACC
AATGCACCATCCACCAATAGCACAACCGCCCATACCACCACCAATGCACC
ATCCACCAATAACACAATATTTGTCAATGCCACAGTAACAACTGACACCA
CCACAACGACCACACTATGTGATGATACTGACTCTGGTTCTATCGTTCTT
TGCAATGACATTCGTTGTATGATAATATGCAACTTGGTTTTGTTGTTAAT
GTTTTATCATTCTTCATAAATGACACCTGGTGATAATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11019MSTRG.11019Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11019.4.p2MSTRG.11019.4.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11019.4.p2.exon6MSTRG.11019.4.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11019.4.p2.exon5MSTRG.11019.4.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11019.4.p2.exon4MSTRG.11019.4.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11019.4.p2.exon3MSTRG.11019.4.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11019.4.p2.exon2MSTRG.11019.4.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11019.4.p2.exon1MSTRG.11019.4.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078_pilongenomesc0000078_pilon:1088097..1097529 -