MSTRG.11004.1.p1 (mRNA) -

Overview
NameMSTRG.11004.1.p1
Unique NameMSTRG.11004.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:841673..845448+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11004.1.p1 ID=MSTRG.11004.1.p1|Name=MSTRG.11004.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3776bp|location=Sequence derived from alignment at sc0000078_pilon:841673..845448+ (Clytia hemisphaerica_ch_hm2_pilon)
CGATCGAGGGCGCTTATACCGACTGCATAATACCGCCCGTTATCAAGATT
CCAAAACTCGTCCCAGTTTCCCTTTCATTCTCTGGCTTGGCGGCAAACAA
GATGGCGATGGTTGATGCATATCTCTTGAAATGAAGGGAAGAATCACACA
GTTAAGTACAAGTTTTTTGTCTGTTTAGAGCAATTCTCTTTGTCCATGTT
CTGTTTAATCCTATTTCTTTGAAGTAATATTTTAATACAGTAGAAACGTC
TTGGTCTATATAGAAAATACTGGTGTCCTGTCTTTTGTGATTTATTTTTC
TGAAGTTTATTTTCTATACATTGATTTTAACTCGCTTTCAACACACAGGG
TACAAGTTGagctgaaaaaacaaaaatttctttcaacgGGTTTCTTTAAA
CAATAAAGCTTGGGTTTCAAGTGAATAAATTTTTGAgtaaaaatgtaatt
ttcattgtttataAGTCAGATGATGATGGCTAGTATTAGGGTTTACGACA
AATGAATTTGTGGaataaagaattgattttaaaccACTTAGTCAGATACG
TGTaagttttaattgttctctggGTCTACACATTTGTTGTGTATGTGGCA
TCTTTTGATGAAACTTGAGACCCgctttcataaaaaactttacgTATGGC
TAGTTTATGAGTTTACGACAAATGAATTTTTGGaataaagaattgatttt
aaaccGCTTAGTCAGATACGTGTAAGTTTTAATTGTTCTCGGGGTCTACA
CCTTTGTTGTGTATGTGGCATCTTTTGATGAAACTTGAGACCTgctttca
taaaaaactttacgTATGGCTAGTTTATGAGTTTACGACAAATGAATTGT
GGaataaagaattgattttaaaccGCTTAGTCAGATACGTGTAAGTTTTA
ATTGTTCTCGGGGTGTACACATTTGTTGTGTATGTGGCATCTTTTGATGA
AACTTGAGACCCgctttcataaaaaactttacgTATGGCTAGTTTATGAG
TTTACGACAAATGAATTTGTGGaataaagaattgattttaaaccGCTTAG
TCAGATACGTGTAAGTTTTAATTGTTCTCGTGTCTACACATTTGTTGTGT
ATGTGGCATCTTTTGATGAAACTTGAGACCTgctttcataaaaaacttta
cgTATGGCTAGTTTATGAGTTTACGACAAATGAATTTGTGGaataaagaa
ttgattttaaaccGCTTAGTCATATACGTGTAAGTTTTAAATGTTCTCGG
GGTCTACACATTTGTTGTGTATGTGGCATCTTTTGATGAAACTTGAGACC
cactttcataaaaaacttttacgTATGGCTAGTTTATGAGTTTACAACAA
ATGaatttgtagacaaatgaatattttgaaactgttaattcaataaatat
tttcatgttttattggtcttctttttttgcaaatacaTCTTATGACAAAA
CTTGAGAAATGGCATGGGGGTTTGAAGATAGATCATTTTGAAGAAGGTCA
ATTGATGTATATAGGTGTTGGGCTATTTCTAccattataaagttttttgc
acTGTCTGATGTTGAAAGACTTTGCTTTCTAAAGTgacttataatttttt
ttacacattttcaGCACTTCAATTGGATGGTACATTCACTTTGCTGGCTC
GGAATTAGAGCTGTAATTCCTAAAAAGTaagacttttttaatttttgtct
tttcacaataacattttttattcctttcgagaaaattgctgtttttcttt
CCAATGTTTAATTTGATGTCTATTTCTTTTACTGTTTAAGtctttaaaga
aagtttttataTGATTTGGATAGCCATTTTATTTTCCAAGTAGATGGTAA
TCaaacttattaatttttttataggaGCTCCTTTGACGATGCTTGGGTGA
ATTGATCAGTCAATATGGAACTCAAAATGGATGAATGCAATACTACGAAT
GGAATAACGAACTAACAAAGTTGGTGGACTATCATCTTTTTCGAAATCTT
GACGAACGCCAAAAACTCAGAAAGTTTTTAAAGCCACAaccaaaagaaat
cttttttttaaatgacaatgAATTTTATCCAATTCGAAGAAGTCTTATTT
TATTACCTTTTTTGCATTCCACAATATTTCTACTTAACCTTTCCCacttt
tttgtgtcttttttcaGAACAAACTGCTGAATGAGATGTTGGCAACTCAA
AGGCGAACCAACATTCTCCTGGGCCAATTGATTgcaaaggtaattttttt
tcaatttctcaaaaCAACTGGACAACTTTTTTACGCGATGATTTAACACA
GCTACAAGCACATCCACGCTTTTCTAACTTGAACCTAGATAAATTTAAAA
CATGCATTATTTGTctgttttttgtaaattttgcggCAAGATAGAACATT
GGTGTCACCATTCTTTTTTAGGTTTCAGAGCAACCATTACCTAATGCAAA
CCCAAACCTAAATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTTG
TAAGTATCATTTCaacttctttgtttttaacttCATATCCACTGAGTTTT
GAATACTTAAAGGGAAACTTTTTGGATTAAGTTCCCGTCAAATTTCGTTT
TCATCATCAGAAGAAACTGCTAAAATTCTAAAGCTCTGTGACAAATTGAc
ttgataattttgaaaaaactcttGAGAAGGAAAGAAAGACTTAATTTGTT
TTGAGCGGGAGAAaattataattgtaaaattgacattttttttagtttga
ataattttttgagagagACAATTGTATCCTTTATCCTATCCTTTAGTTAC
TCTCTATTTACTTTATGTATTTGTAACAATTTTAATATGCAACTTTTAGC
TtacacaaaggtttctagataACTAAAATGTTCCTTTTCGTTgctttcat
tactttttgctttatttctaatgtCTGAGTGTCGCCGTGCTAGATTACAT
TTAAGTACTGTACGGTTATCTAAAGcaataaaattgtatttttaggtTCT
GGCAGATGGCTCCAACTTGTTAGATGTGCCGAGACATAATACTCCTACAA
TATATGCCATTGCCTTGGCTAAGGTGATGTTTACGACGGAAGAACTTGAA
AATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATT
AGATCCTAATCAAGTCAAGAAAATAAAGCGTAAATTGAATTATTTCATCC
ACCATGGGTTGACAAATACgatttaacttattttcaaggttttttgctgt
tttataCAAATAAGTCATGTTAAGCCTGGGAGCTCCTCAAAAAGTTATgc
cttgtttttgtttttttgccatAACTTTCAACTAGTTgtgatataaaaaa
atttaaactttgtttcaaaaaattggCAGTCCGCACATTTTGGTTCATTG
CTCTTGAAGGGAAAAAGACAAAACCAAAGTTAGTAATACCTTATTGAAAA
GACAATTTTGAATGGTAGAATCTAAGcttaaatacttttttaaagaattc
gaaagtgaaaataaaaacttcgAGAGCAATCAACTAAAATGTGTGgactg
tcaatttttttgaaattcgttcatataatttttttacaggATTGATTCAA
CACCAATATAAACTGGAGGAaccaaagttcaaaaaaatttggccTCATTG
CCGGAGGTCCATCAACCAGGCTGGAAATGACGCCAAAAGAAAAGCTGACG
TTGAAGATGAGATTCAAGAGaataattaatttaaaattataattggtgca
aagaaaaattgtttaataCAATCTAt

Coding sequence (CDS) from alignment at sc0000078_pilon:841673..845448+

>MSTRG.11004.1.p1 ID=MSTRG.11004.1.p1|Name=MSTRG.11004.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1824bp|location=Sequence derived from alignment at sc0000078_pilon:841673..845448+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGGCCAATTGATTgc
aaagGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCTAAATCAAA
CACAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAGATGGCTCC
AACTTGTTAGATGTGCCGAGACATAATACTCCTACAATATATGCCATTGC
CTTGGCTAAGGTGATGTTTACGACGGAAGAACTTGAAAATGGCATGGTCT
CGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTAGATCCTAATCAA
GTCAAGAAAATAAAGCgATTGATTCAACACCAATATAAACTGGAGGAacc
aaagttcaaaaaaatttggccTCATTGCCGGAGGTCCATCAACCAGGCTG
GAAATGACGCCAAAAGAAAAGCTGACGTTGAAGATGAGATTCAAGAGaat
aattaaATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGGCCAATT
GATTgcaaagGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCTAA
ATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAGAT
GGCTCCAACTTGTTAGATGTGCCGAGACATAATACTCCTACAATATATGC
CATTGCCTTGGCTAAGGTGATGTTTACGACGGAAGAACTTGAAAATGGCA
TGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTAGATCCT
AATCAAGTCAAGAAAATAAAGCgATTGATTCAACACCAATATAAACTGGA
GGAaccaaagttcaaaaaaatttggccTCATTGCCGGAGGTCCATCAACC
AGGCTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAAGATGAGATTCAA
GAGaataattaaATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGG
CCAATTGATTgcaaagGTTTCAGAGCAACCATTACCTAATGCAAACCCAA
ACCTAAATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTG
GCAGATGGCTCCAACTTGTTAGATGTGCCGAGACATAATACTCCTACAAT
ATATGCCATTGCCTTGGCTAAGGTGATGTTTACGACGGAAGAACTTGAAA
ATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTA
GATCCTAATCAAGTCAAGAAAATAAAGCgATTGATTCAACACCAATATAA
ACTGGAGGAaccaaagttcaaaaaaatttggccTCATTGCCGGAGGTCCA
TCAACCAGGCTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAAGATGAG
ATTCAAGAGaataattaaATGTTGGCAACTCAAAGGCGAACCAACATTCT
CCTGGGCCAATTGATTgcaaagGTTTCAGAGCAACCATTACCTAATGCAA
ACCCAAACCTAAATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTT
gtTCTGGCAGATGGCTCCAACTTGTTAGATGTGCCGAGACATAATACTCC
TACAATATATGCCATTGCCTTGGCTAAGGTGATGTTTACGACGGAAGAAC
TTGAAAATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACT
GCATTAGATCCTAATCAAGTCAAGAAAATAAAGCgATTGATTCAACACCA
ATATAAACTGGAGGAaccaaagttcaaaaaaatttggccTCATTGCCGGA
GGTCCATCAACCAGGCTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAA
GATGAGATTCAAGAGaataattaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11004MSTRG.11004Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11004.1.p1MSTRG.11004.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11004.1.p1.exon1MSTRG.11004.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.1.p1.exon2MSTRG.11004.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.1.p1.exon3MSTRG.11004.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.1.p1.exon4MSTRG.11004.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.1.p1.exon5MSTRG.11004.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.1.p1.exon6MSTRG.11004.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11004.1.p1.exon7MSTRG.11004.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078_pilongenomesc0000078_pilon:841673..845448 +