MSTRG.10975.3.p1 (mRNA) -

Overview


Name	MSTRG.10975.3.p1
Unique Name	MSTRG.10975.3.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:468245..470054-
coding sequence from alignment at sc0000078_pilon:468245..470054-

mRNA from alignment at sc0000078_pilon:468245..470054-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.10975.3.p1 ID=MSTRG.10975.3.p1|Name=MSTRG.10975.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1810bp|location=Sequence derived from alignment at sc0000078_pilon:468245..470054- (Clytia hemisphaerica_ch_hm2_pilon)
CATTTTGTAGTGAGTATTTTCCAAAGAAATCCAAAGAAATCGGATGTTTC
AGAGTCAGCAAAATCTTTACTCGTTCTTAACTTGTTCTTAATATTTTGGC
CATCAAAGCCATATGTTCTTATATTGTTTGTTCTTATAAAAAAACGTGTA
AGTTGTGATAATCCACCCATTTGGTGTCATATACTCTTAAAGGAGATTAC
CAGACAGATTTGTGAACAATTGAATGAAAGAAATGTGGAAATAGAGGGAT
GGAGGTGAGTAAGAGGTCAATTCTTACTTATCCAAAATCTTATATTAATT
TTTTGGTATATCTTGAAAGGAGGCAGTTGCCTCTTTTTTGTGACTGAGAA
TTCAAGTCAACACTTGCTATGTTTGTTTGATAGGGGATAGTGATACAGTG
ATAACATTGGTAAAAGAATGACACTGTCATATCAAATTTGATATACGATT
CAAGTCAATTTTGATAGAGAATTGGACAAAGGTTTGAAAGAATTACAATC
AAATTATCCAATTGTCTAACCCCTTGCGATTTTTAATATGATATTAGAGT
AATATAACTAGATGAAAGTTTAAGCTATGTATGCTTTACTTTTAATTTGA
TATGGATTTTTAGACTAGTTTTGACTGTAGGCTACTGGCATCCACTAACG
GATTCGTACTCCTTCTACTATACTATCTGTGGTTTCGTAGGGGTCTGTGA
TTCAGACAAGACTTGCTCCTTTTTCTTTTTTCAGAGATTGTTTGTTGAAA
CACATTTTTTTCTTCAAATCAACGGAATACTCAAGCATTGACCCATCTCA
GTTCATGCAGTGTTTGAAGTATTGAAGTTTACAGAAACTGTTTACAAGTC
ACTATTTTCCGTTTTCCTTGCATTTCTATCAAGTCTTTTACTCACTTAAG
CGGTATCTTAATTTCCATTCCCAATATTTTCTTAATTTAAGACTTATAGA
TCGATCAAAGATGACTGACCAGAGCAAAGAGGGAGCTGAAAACTACAGAT
TGACAAGTTCTAAAATACAACAACACTATTTTGACATGCTTATCAATACT
ATTGATATCCAGCCTGGATGGAAAGTTTTAGATCTAGGTTGTGGAACTGG
CAATGGAACAAAGAAGCTATGTGAACGAGTTGGTGCTTCTGGACATGTCA
TTGGCATAGATCCTATTGCAGAGAGAATCGTTCAGGCGAAAGAGTACTAT
GCAGCAGGTAATATTAAATATCACACAGCATACGGTCGAGATGCGTGCAC
TTTCGGTGAAGGCATTTTCGATCTTGTAGTCGCAGGTACAGTCATGCATT
GGCTGTCCCCTGAAGAGAAACAAAAAACATTGGAAAGTGTGTACAAAGCC
TTAAAACCTGGTGGAATCTTTCTCTTCAATAACATGTTGAAATATGACAG
TGCAAACACCTTGAAATTTCTCGATTTCTTTAAAGATCAAAGCGTCAAAG
AAAAGCTCTTCGCTGCTGTTTTCTGCCCAGATAAAAGAACTTTTTATGAT
CTGGCACAGAAAACAGGATTCAGCAGAACGACAATTGATGAAGTTTCAGT
CCAAGTTCCATTTGATTCACTTGAACATGCAATTCATTGGTTTTCAGCTT
CTCTACATGCTATTGGATTTCATACAGCTCTGGACGAATTACGTCAAGTT
ACCAGCGACGAAAATAATAATTTGGATTTTCTTTTCAATGAAAAAGGAGA
ACCTTATTTTGATAATAAATATCATTTTGTAACTAGTCACAAGTAATTTT
TCGGCGATAAATAGTGAATCTATTATATGATTGATTTTAAATCATTTTCG
TAATAGCAGA

Coding sequence (CDS) from alignment at sc0000078_pilon:468245..470054-

>MSTRG.10975.3.p1 ID=MSTRG.10975.3.p1|Name=MSTRG.10975.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2118bp|location=Sequence derived from alignment at sc0000078_pilon:468245..470054- (Clytia hemisphaerica_ch_hm2_pilon)
ACTTATAGATCGATCAAAGATGACTGACCAGAGCAAAGAGGGAGCTGAAA
ACTACAGATTGACAAGTTCTAAAATACAACAACACTATTTTGACATGCTT
ATCAATACTATTGATATCCAGCCTGGATGGAAAGTTTTAGATCTAGGTTG
TGGAACTGGCAATGGAACAAAGAAGCTATGTGAACGAGTTGGTGCTTCTG
GACATGTCATTGGCATAGATCCTATTGCAGAGAGAATCGTTCAGGCGAAA
GAGTACTATGCAGCAGGTAATATTAAATATCACACAGCATACGGTCGAGA
TGCGTGCACTTTCGGTGAAGGCATTTTCGATCTTGTAGTCGCAGGTACAG
TCATGCATTGGCTGTCCCCTGAAGAGAAACAAAAAACATTGGAAAGTGTG
TACAAAGCCTTAAAACCTGGTGGAATCTTTCTCTTCAATAACATGTTGAA
ATATGACAGTGCAAACACCTTGAAATTTCTCGATTTCTTTAAAGATCAAA
GCGTCAAAGAAAAGCTCTTCGCTGCTGTTTTCTGCCCAGATAAAAGAACT
TTTTATGATCTGGCACAGAAAACAGGATTCAGCAGAACGACAATTGATGA
AGTTTCAGTCCAAGTTCCATTTGATTCACTTGAACATGCAATTCATTGGT
TTTCAGCTTCTCTACATGCTATTGGATTTCATACAGCTCTGGACGAATTA
CGTCAAGTTACCAGCGACGAAAATAATAATTTGGATTTTCTTTTCAATGA
AAAAGGAGAACCTTATTTTGATAATAAATATCATTTTGTAACTAGTCACA
AGTAACATTTTGTAGTGAGTATTTTCCAAAGAAATCCAAAGAAATCGGAT
GTTTCAGAGTCAGCAAAATCTTTACTCGTTCTTAACTTGTTCTTAATATT
TTGGCCATCAAAGCCATATGTTCTTATATTGTTTGTTCTTATAAAAAAAC
GTGTAAGTTGTGATAATCCACCCATTTGGTGTCATATACTCTTAAAGGAG
ATTACCAGACAGATTTGTGAACAATTGAATGAAAGAAATGTGGAAATAGA
GGGATGGAGACTTATAGATCGATCAAAGATGACTGACCAGAGCAAAGAGG
GAGCTGAAAACTACAGATTGACAAGTTCTAAAATACAACAACACTATTTT
GACATGCTTATCAATACTATTGATATCCAGCCTGGATGGAAAGTTTTAGA
TCTAGGTTGTGGAACTGGCAATGGAACAAAGAAGCTATGTGAACGAGTTG
GTGCTTCTGGACATGTCATTGGCATAGATCCTATTGCAGAGAGAATCGTT
CAGGCGAAAGAGTACTATGCAGCAGGTAATATTAAATATCACACAGCATA
CGGTCGAGATGCGTGCACTTTCGGTGAAGGCATTTTCGATCTTGTAGTCG
CAGGTACAGTCATGCATTGGCTGTCCCCTGAAGAGAAACAAAAAACATTG
GAAAGTGTGTACAAAGCCTTAAAACCTGGTGGAATCTTTCTCTTCAATAA
CATGTTGAAATATGACAGTGCAAACACCTTGAAATTTCTCGATTTCTTTA
AAGATCAAAGCGTCAAAGAAAAGCTCTTCGCTGCTGTTTTCTGCCCAGAT
AAAAGAACTTTTTATGATCTGGCACAGAAAACAGGATTCAGCAGAACGAC
AATTGATGAAGTTTCAGTCCAAGTTCCATTTGATTCACTTGAACATGCAA
TTCATTGGTTTTCAGCTTCTCTACATGCTATTGGATTTCATACAGCTCTG
GACGAATTACGTCAAGTTACCAGCGACGAAAATAATAATTTGGATTTTCT
TTTCAATGAAAAAGGAGAACCTTATTTTGATAATAAATATCATTTTGTAA
CTAGTCACAAGTAACATTTTGTAGTGAGTATTTTCCAAAGAAATCCAAAG
AAATCGGATGTTTCAGAGTCAGCAAAATCTTTACTCGTTCTTAACTTGTT
CTTAATATTTTGGCCATCAAAGCCATATGTTCTTATATTGTTTGTTCTTA
TAAAAAAACGTGTAAGTTGTGATAATCCACCCATTTGGTGTCATATACTC
TTAAAGGAGATTACCAGACAGATTTGTGAACAATTGAATGAAAGAAATGT
GGAAATAGAGGGATGGAG

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.10975	MSTRG.10975	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.10975.3.p1.exon2	MSTRG.10975.3.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.10975.3.p1.exon1	MSTRG.10975.3.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.10975.3.p1	MSTRG.10975.3.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000078_pilon	genome	sc0000078_pilon:468245..470054 -

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MSTRG.10975.3.p1 (mRNA) -