MSTRG.10973.1.p1 (mRNA) -

Overview
NameMSTRG.10973.1.p1
Unique NameMSTRG.10973.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:359481..363487-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10973.1.p1 ID=MSTRG.10973.1.p1|Name=MSTRG.10973.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4007bp|location=Sequence derived from alignment at sc0000078_pilon:359481..363487- (Clytia hemisphaerica_ch_hm2_pilon)
GTAAAAGTTAGGTGACACGTTGAATCCTTAGCATTCTAACAAGGGGACAA
CTATATCAACGTATAGCAAATACTTTTTCGTGTTTCTTAGAAGGTTAAAG
TCACAACGTTCGAAAGTATGAAATTACGATTTGTTGCATTACTCCTATTC
TTTATGACCGTGGCAAATGGAAACGAATCAACGAAGACGGTTGCTTCTTG
TGCTTGGCTTGAAGAGGAAATAGTATGTAAACTAATTATTATGGAACCAC
CTATTCGCTCCTTTTTAAAAGGAGACAAACAAAGATATCTTTGATCGGGT
GCATAACTTAGATTGTAGCATTGTTGATCATGGCCTGGTTTACCATAAAA
TTACGGCTAGTCTCAGAAAAAAAACATTGCTGAAAGTTGTAGTGCTACTT
GAGAATATTTTGAGAAGAGTTTAATTGTGAAGTTAACTCTCTTCCAATCA
ATGGTGACAAATTATTGACTCAATATAATGGAGGGGGTTGAGATGTTTGA
AAAAAGTTGGGAGATAACCTTATATAAGAGAGTTTATAACACTTTTCTCA
TTATTTTTTGTCCTTGATTCTATAACTGAACTTGACCTTAAATCAGTTCT
TATGAGTATTGTCTTATAAGCTAATGCGTATTGAAAATGACCCTCGCTTG
AATTTCTGACGAAATCTTTTCCTTAGAACCCAGTCTCACCAAGAAAACAT
ACACCATTTTACACTTACAATGAACGACTGGAAGAACTGGTCAATCATCA
AATCAACTATGAGATGAATGCTTTCTACAGTTACCTAAATATGGTAGATG
TTGATTTATACCTTCGTATGATTTTTGACCCCTCCCCCCCACTGGGGTTA
AAGGTTTGCAAGGTGACGGGTCCAAGAGACTCAATTTTGACCTTTTTGCG
ACCTTTCAAGAGACTTTTTGAGGTGGTTTTTATCGTAAAGACATCTGCTT
TTATACTCTTGTTCTTGTATAAGTCAGGGTTTCCAGAATTGATTTGCGAA
ATGACGCTTTCATAGAACCACTTTCTGCGCAGTTTTCTAACAACCTTTAT
ATTTTGCGGAATTCAATATCATAGAATCATAGGAATATATCCCCCGTCAA
GGTTTTTTGGATCAGAACCAATTCCCGCCGATTCCTTAAGAAATTACATT
CTAACTTTCTTAAATTTTTAAAGGCATCTTATTTTGGAACTGTGGAAAAC
AATTTGGAAGGCTTTTACAATTATTTTCATTCATCGGCCATGGAAGAACT
GAAACATGCTGAAATGTTGATGAAATACCAAGCGAAAAGAGGAGGACGTA
ATAAATTGTTACCCATCCAAAAGGTTTGTTTATTTACCCCCGTTTAGTTG
TTGGAGTTTGATCTTGCCCAGTGCTGGCTAACCCAGTGAAAATCATGGCT
CCAACCCAACCCGTTGCATAAGTAACGCCCACTAGAGTCTTGTTGCTGGT
ATTGACCTCATCAAAATTAGCGTATAATCAATACACTCAAAGTTTTTTTA
CCCCAGTTAACTAACGTCAAAACGTTTACACGATTATAAACTTCTTCTTT
CTAGAATCACAAACTCTAATGAAATTTAAATTTTCTGCGTTAATTCAAAT
TTTAGAAAGCCCCACCCAACTGGGATTTCGACACCTAAAGGGACGAGAAG
GGGTGTATATAAGTCAGTGGTATTCAAGATTTATTTGGTAGAAGCGCAAC
AACTTCTCCAACTTATATTTTGTTGAGTCCACTTCCTTTAGATCCACCAT
TGTAAGACTTTGTATCCCTAATCAAAGAATTTTATTGTTGCGATTTGGTG
CCATATTTGCTTAATAAAAATTTCCTCAATAGCTATGGTAACAAATAATC
ATCAATGGAGTACAGTGAGTCTCCAATATATATATATAGTCTAGAAGTAT
AAAACCTTCAACTACTCAAAATGGAAACAATAAAGACAAAAACCCACAAA
ACAAAAAGACAATACAAATACAACAAAAATCTAGAATGAACATTCACAGA
AAATCAATCAGGTTGGAGTAGAAAAGGAAAATATGATGACATAGAAATCC
GTCAATGTAAAACTAGTGATCTAAAATGACTTTAAGGAAGAAAGTAACTC
AATATGAGTTAAGATGGAAAGAAGTAACTCAATATGAGTCAAAAAATATT
TCAAAAAAAAAAAACACGTTATCTGTTCCTCAGTTTTCGACCTACACAGG
ATTTCGGCCATTTGTGAAAATATCCTCCTATATGATGGAAATAGGGTTGT
GTAGGTAGGCCAAGCAGTGTTAGCTAGACACCACCACAGATAAAAAGATG
TAAAAAGATGTGTTTAGTGAAAGTATGAAACGCGCGCAAATATAAAATAA
ACTAAAACTTAAACTCCACGGAACCAGCCGAAGAAACTAAAATAACAATG
AAAAAAGAAGTGTACTTTCTACTAGACAAAGTTGCCACACCTTTGACACG
TTTCTGCCACAACGTTGTAGAAAGCATACTAGATGGGAAGGAACTGGGAT
TGGATCGCCACTATCCAACCCTGTGGCTCTCACACACATTTTACAGTTCA
AAGAAGAAGATGGAAAGAGTGGGAAAAGAATGAGAATTCAAAAAAGTCGG
ACTATAACCCGGTTCGAAGCCCCGTACACCGTGACCGCTCACCGCAAGAG
CTGGCGAACGAGTGAATCTTGAGAGAGTTGAAATCTTGAAAATTCTATAT
ATATTCGAGTAAGGTTTATGAAGCATTGTTAAGGGACATTGGAGTTATAG
AGGTTCGAGTTAAAGGGACTCCACTGTAGTATCTAAACCGCTTTTGCTTT
ATTTTCAAAAGCCGATACAATCAAACATTTGGACAAACAGTGTGGATGTG
ATGAAGGATGCTTTGAAACTGGAGAAAGACATCACCACCAAACTACTTTG
TTTGCATCGGTTGGCTAATGACAAGTACAATGATGTTGATGTAAGCCCCC
CTGTTAGAATTTTAAGGACACTTGCAAGCAAAACATGTTTCGATTTGAAA
AGGCCTAGGTATCAGTTTTCCAGTACCAGGCTCAACGTGGAAAGCCGGAA
AGCTGGATATTAAGGAAAATGCACGTTTTTTTTTAAGAAACTACTTTTAC
CAAGCAGCCTCAATTTTTCTTAAGAATTCGGCCTTTTAAGCCTAAATGTT
TCTAAACTTTTTGACATAATCAGCCTATTTTTCATTCCAAAGAAAAAAAC
AACATTTGTTTTGATCATAGACATATGAAAAGTTATAATGTCTAAATGCT
CATATGTCTATGTTTTGAATGGAAGGTACTTAAAAAACGAATTAGAAAAT
GTTATTTTCTCATTCTCATTCTCAGCATGTCTCTTAGATGTTTCTTAGTT
TTTAGGCATTCCGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTAAAAAAA
ACAAGATGTGTTTAAGGTTTGAAGTAGTAAACCCCTGTGTCACAAACTCG
ACGGACACACCCCACCACACTGGAAAATTTAGCGAAAATTTCGTTCAAGG
TAGGAAAATCAATTACAATTTCAGCCCACTGGGAAATTGAGTTTGTTTTA
ATCCCCATTTGAATTTCAATGGAATAAATTGCACTTTAAAACCATCCCTG
CTGGAGTTTTAAGCCTCGGAACAAAATAATTGCTATTCCTATCGGGATTT
TTATTACTGCTGGGAAAAAGTTCAACCGGGTTTGTGAGACAGGGATGTTA
GTAGTAAAGTGAATTAAATTATTAAACACATGTTCACGTCTTCATTGATT
TGTTTTTCAGTTGGTGAATTTCTTGGAAGGCGAGATGATACCTGAACAAT
ATTCATCCATGAGCCAAATACAAAGTCATATCCACAACATTCAAAAGCTA
GCTTCCTCAGGAAACAAATCACTGACGAATTATGGTCTTGCTGAATTTCA
TTATAATATTGAGTTGTTAAAGAGAAAAGAAAAATAGCTTTTACATTATT
TCAATTTGAATAATTCAATATACCAAGTTTCTTTCTTGAATATATTTAAT
ACAGTGA

Coding sequence (CDS) from alignment at sc0000078_pilon:359481..363487-

>MSTRG.10973.1.p1 ID=MSTRG.10973.1.p1|Name=MSTRG.10973.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3390bp|location=Sequence derived from alignment at sc0000078_pilon:359481..363487- (Clytia hemisphaerica_ch_hm2_pilon)
TTGGTGAATTTCTTGGAAGGCGAGATGATACCTGAACAATATTCATCCAT
GAGCCAAATACAAAGTCATATCCACAACATTCAAAAGCTAGCTTCCTCAG
GAAACAAATCACTGACGAATTATGGTCTTGCTGAATTTCATTATAATATT
GAGTTGTTAAAGAGAAAAGAAAAATAGCCGATACAATCAAACATTTGGAC
AAACAGTGTGGATGTGATGAAGGATGCTTTGAAACTGGAGAAAGACATCA
CCACCAAACTACTTTGTTTGCATCGGTTGGCTAATGACAAGTACAATGAT
GTTGATGCATCTTATTTTGGAACTGTGGAAAACAATTTGGAAGGCTTTTA
CAATTATTTTCATTCATCGGCCATGGAAGAACTGAAACATGCTGAAATGT
TGATGAAATACCAAGCGAAAAGAGGAGGACGTAATAAATTGTTACCCATC
CAAAAGAACCCAGTCTCACCAAGAAAACATACACCATTTTACACTTACAA
TGAACGACTGGAAGAACTGGTCAATCATCAAATCAACTATGAGATGAATG
CTTTCTACAGTTACCTAAATATGATGAAATTACGATTTGTTGCATTACTC
CTATTCTTTATGACCGTGGCAAATGGAAACGAATCAACGAAGACGGTTGC
TTCTTGTGCTTGGCTTGAAGAGGAAATATTGGTGAATTTCTTGGAAGGCG
AGATGATACCTGAACAATATTCATCCATGAGCCAAATACAAAGTCATATC
CACAACATTCAAAAGCTAGCTTCCTCAGGAAACAAATCACTGACGAATTA
TGGTCTTGCTGAATTTCATTATAATATTGAGTTGTTAAAGAGAAAAGAAA
AATAGCCGATACAATCAAACATTTGGACAAACAGTGTGGATGTGATGAAG
GATGCTTTGAAACTGGAGAAAGACATCACCACCAAACTACTTTGTTTGCA
TCGGTTGGCTAATGACAAGTACAATGATGTTGATGCATCTTATTTTGGAA
CTGTGGAAAACAATTTGGAAGGCTTTTACAATTATTTTCATTCATCGGCC
ATGGAAGAACTGAAACATGCTGAAATGTTGATGAAATACCAAGCGAAAAG
AGGAGGACGTAATAAATTGTTACCCATCCAAAAGAACCCAGTCTCACCAA
GAAAACATACACCATTTTACACTTACAATGAACGACTGGAAGAACTGGTC
AATCATCAAATCAACTATGAGATGAATGCTTTCTACAGTTACCTAAATAT
GATGAAATTACGATTTGTTGCATTACTCCTATTCTTTATGACCGTGGCAA
ATGGAAACGAATCAACGAAGACGGTTGCTTCTTGTGCTTGGCTTGAAGAG
GAAATATTGGTGAATTTCTTGGAAGGCGAGATGATACCTGAACAATATTC
ATCCATGAGCCAAATACAAAGTCATATCCACAACATTCAAAAGCTAGCTT
CCTCAGGAAACAAATCACTGACGAATTATGGTCTTGCTGAATTTCATTAT
AATATTGAGTTGTTAAAGAGAAAAGAAAAATAGCCGATACAATCAAACAT
TTGGACAAACAGTGTGGATGTGATGAAGGATGCTTTGAAACTGGAGAAAG
ACATCACCACCAAACTACTTTGTTTGCATCGGTTGGCTAATGACAAGTAC
AATGATGTTGATGCATCTTATTTTGGAACTGTGGAAAACAATTTGGAAGG
CTTTTACAATTATTTTCATTCATCGGCCATGGAAGAACTGAAACATGCTG
AAATGTTGATGAAATACCAAGCGAAAAGAGGAGGACGTAATAAATTGTTA
CCCATCCAAAAGAACCCAGTCTCACCAAGAAAACATACACCATTTTACAC
TTACAATGAACGACTGGAAGAACTGGTCAATCATCAAATCAACTATGAGA
TGAATGCTTTCTACAGTTACCTAAATATGATGAAATTACGATTTGTTGCA
TTACTCCTATTCTTTATGACCGTGGCAAATGGAAACGAATCAACGAAGAC
GGTTGCTTCTTGTGCTTGGCTTGAAGAGGAAATATTGGTGAATTTCTTGG
AAGGCGAGATGATACCTGAACAATATTCATCCATGAGCCAAATACAAAGT
CATATCCACAACATTCAAAAGCTAGCTTCCTCAGGAAACAAATCACTGAC
GAATTATGGTCTTGCTGAATTTCATTATAATATTGAGTTGTTAAAGAGAA
AAGAAAAATAGCCGATACAATCAAACATTTGGACAAACAGTGTGGATGTG
ATGAAGGATGCTTTGAAACTGGAGAAAGACATCACCACCAAACTACTTTG
TTTGCATCGGTTGGCTAATGACAAGTACAATGATGTTGATGCATCTTATT
TTGGAACTGTGGAAAACAATTTGGAAGGCTTTTACAATTATTTTCATTCA
TCGGCCATGGAAGAACTGAAACATGCTGAAATGTTGATGAAATACCAAGC
GAAAAGAGGAGGACGTAATAAATTGTTACCCATCCAAAAGAACCCAGTCT
CACCAAGAAAACATACACCATTTTACACTTACAATGAACGACTGGAAGAA
CTGGTCAATCATCAAATCAACTATGAGATGAATGCTTTCTACAGTTACCT
AAATATGATGAAATTACGATTTGTTGCATTACTCCTATTCTTTATGACCG
TGGCAAATGGAAACGAATCAACGAAGACGGTTGCTTCTTGTGCTTGGCTT
GAAGAGGAAATATTGGTGAATTTCTTGGAAGGCGAGATGATACCTGAACA
ATATTCATCCATGAGCCAAATACAAAGTCATATCCACAACATTCAAAAGC
TAGCTTCCTCAGGAAACAAATCACTGACGAATTATGGTCTTGCTGAATTT
CATTATAATATTGAGTTGTTAAAGAGAAAAGAAAAATAGCCGATACAATC
AAACATTTGGACAAACAGTGTGGATGTGATGAAGGATGCTTTGAAACTGG
AGAAAGACATCACCACCAAACTACTTTGTTTGCATCGGTTGGCTAATGAC
AAGTACAATGATGTTGATGCATCTTATTTTGGAACTGTGGAAAACAATTT
GGAAGGCTTTTACAATTATTTTCATTCATCGGCCATGGAAGAACTGAAAC
ATGCTGAAATGTTGATGAAATACCAAGCGAAAAGAGGAGGACGTAATAAA
TTGTTACCCATCCAAAAGAACCCAGTCTCACCAAGAAAACATACACCATT
TTACACTTACAATGAACGACTGGAAGAACTGGTCAATCATCAAATCAACT
ATGAGATGAATGCTTTCTACAGTTACCTAAATATGATGAAATTACGATTT
GTTGCATTACTCCTATTCTTTATGACCGTGGCAAATGGAAACGAATCAAC
GAAGACGGTTGCTTCTTGTGCTTGGCTTGAAGAGGAAATA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10973MSTRG.10973Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10973.1.p1MSTRG.10973.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10973.1.p1.exon5MSTRG.10973.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10973.1.p1.exon4MSTRG.10973.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10973.1.p1.exon3MSTRG.10973.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10973.1.p1.exon2MSTRG.10973.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10973.1.p1.exon1MSTRG.10973.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078_pilongenomesc0000078_pilon:359481..363487 -