MSTRG.10970.1.p1 (mRNA) -

Overview
NameMSTRG.10970.1.p1
Unique NameMSTRG.10970.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:295167..298832-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10970.1.p1 ID=MSTRG.10970.1.p1|Name=MSTRG.10970.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3666bp|location=Sequence derived from alignment at sc0000078_pilon:295167..298832- (Clytia hemisphaerica_ch_hm2_pilon)
ACCAAACCCTCCACCAATTTAAAGACACCAAAATTGAAGATATTGATCGT
TTAAATGAAGTCAAAGATGTTCGCTGGTCCCTTGACGATAGTCTGTTACT
TAGCAACAAAGATGACAGCTTTAAGAACGAGAATGACGCCATTGACAGTG
GCGTTACAAATCGTCATAAAGTTTTAAACCCTCACGAACAATATTTTCCT
AAAGATTTCGATGAAAAAAGCGCAATGAAAAAAGCGATGCTTGATTCGAA
TATTCAAGCGTGGCGTGATGTTGGTGAGTGCCAACACGCAATGAACGTAC
TTCGCGAGATTATCAAATGTGATATGTCTGTTTTATCATGGTCACTAACC
TACGAAGCTGAAAAATGGGCTGTATTGTTAGCATCACGCCTGACGGATAA
AACTGTGAGTGATAAAGTGCATTTGAGTCGATCATACGGAGATATGGGAC
AATTGATTTATTACGCAGAGGGGCTCTTTCAAGGACCTGGGTGTAACATG
GCGATAACTGCTTGGTTAAGGTATAAATACAAGGAGTCTAGAGAAAAGTC
CGTAGATGATCTTCATTAACTTTGAATTGATCATTGAACCTTTGTTCATT
CGAAGGATTTTCGATTCTCAAAGCTTTTGAACCAGTAAAATTTAATGAGA
AATTGAATGATAAATAGTATACAAACGACTTAAAGTCTGTCTCAAAAGAC
ACTTTTTTAACATTTTCTCAGCACCTACTCGTGCTATTTTAAAAGTTACA
TGTACCGTTGGAAAGATATTTTGCTGGAAAATAATCTAAAAATCAAAGAC
TTTTGAAAAATTGAAAAATGAAGACGAAATTAAGTGCTCACATACTTTTG
AGAAAGACTTTGAAAAGTATGAGAAATTAGTTATCGGTGGGTTTTCAAAT
TCTAATGTTTAAAGTGCTTAAAATAAATATGTCTGGGGTTCTAAAAAAAA
CATAGTGTACTCTTGTTCAAATCAAAATGGGGATGAAATTTTAGGGTATT
TTTCCCTTTCGTTCTGTAGTATAACCTCTTGCTTAAACACTCTTTTTTGT
TAAGGCACGGTCTTGGTATAGAAACGATTGATTCTGTTGGTCATCTTTCG
CCGTTGGAGCATGGAAAAGTCATCGGAGGTATTTACATATAAATCAATAT
TTGGAAAAATTCTTGGATGTTGGTCAAATTGCATTTTATTGCGGGAAAAG
TTTTCGCAATTTCGCAAATGCTGAGCCTTTTCTAAATTCCCAATGGGACT
TAATTTTTCAGATGACACCCGGGTACTCAAAATCTGCGAAATTTAATCCC
CGCGAAAATTTATCCCAATAAAGTAGTTGTTTTTCATATTTTCATGCTTG
GAACAATTTGAAATTTCTTTGAGATGTTTTTTTCATAGGGATTTTTTTTA
AGGTATGTGTACACCTTTTTTCCGATTTTTTGTCAAAAAAAATTTTTTCA
GTCAAAGTGGAAGAAAAGTTACTGGATTTCATTTTGGTAAAATCGCGATC
TTAAAATCTTTTTTAGATCCAGAGTTATAACAATTTAAGTTTCAAAACAA
AGTTCGTCTTATGATGGATTATTTACTCAAATAATTGTCTCTTTCGGAAA
CAACAAAGACAAAAGAGAGAATTCAGCTGATGTTTATTCTCACCTCTATT
GAATAGTAATATTTTTGACACATTTCACTGATTACTCAAATTAACAGCAA
TCATCTCGTTAAAAAATTCAAATTGATGTAGAAAAAAACGAAATTTTACC
ACACCATACTAGTTTTAACGAGGTTAAAGTCACCCATAGCATTTAGCTAT
GAACTTAATTTTTTTTTTATATTTTCAGCAAAGAATTGAACTAAAAAAAT
GTCTTAGGATTTCTTTTCTAATCGAGTTAAAGCTTCACAATTTCAGGTTA
AGTGGAAAAAACTCGAGAAATGAATGATTTTTTTCCAAATTTTAACAATT
TTTAAGTTTTCTCGAGTTAAAGTCGATCCAAAAAAAAATCCTAAGACATT
TTTTTGGTTCAATCTATTGGGAACATAGTATCGAAATTATTTTTTCAAAT
TTCAAAAGCTATGGGTGACTTTAACTTCTTTGAAGTAGGTAAGGTTAAAA
TTCTTAAGATTTTAATTATATCCTGCCCAGTTTTTTAAATTCAGCTGAAA
ATTTTGCCATTAGAAAGAGAATATTATTGGCATTCAGAAAATATATACTT
TTGATGTATAAAAATTTGTTGTTCTAAAGATATGATCAATTAAAGAGAAT
GTGTCAAGGAAGGTGAACACATACCTTAAGGCTTTTGTAATCTTTCTGTT
ATTTCAGGGCATTTCAAACAGCTACTTTGGCAAGGATCTCAAAGATTTGG
TGCTGGAATATCGTACAACAATGTAACAAGAAGTGGTTTTGTTGTCATGT
TCTTCAAAGATTTGATCCAAGAACAATCCAAAGTCAAAATCCCTACAGAA
CCTTTACGTAAGTATTTGCTTCGCTGTACCTTCAAAATTCCACAAATTTG
CACTCCCCCTCTTCGATCCTTCGACATGGCAAAAAAAACTCGATAAGAAT
TTCGGGTTAGTTATTGTTCCAGAGGTACTATGGATATACTAGTCTGAATC
GTAGACCTCTACAAAACCCCAGGTAGTATAAGGAGCACGAATCCGTTAGT
GGATGCCAGTAGCCTACGGGTATACACGTCTTACAGCCCCAGTGGAACTT
TTTTCTTCAGTGGGGTTAAAAATTCCTTTAGAAATCCCAATTAGGATAGA
ATTTCTATTGTTTCAAGGTTTAAGAATCCAGTGGTGATGGTTTTGGAGTG
TAATTTTTAAACATTGAATTTCGAATGAATGGGATGAAATCAATTTCAAT
TTCCCAATAGGGCTGAGTTTCTACAGGGTATTTTCCCACCGGGGACGAAA
TTTTCGCCAAATTTTTCAGTGGGGCTGGGGTCCCAACGGGTCTGTGACAC
AGGAATGTATGGATAGAGCTGGTAGTAACACTTCCCTTGGTCAGGACCAC
CGATCAGAAAGGATGTTTTAACTACTAAATCCTTTTTTTCTGTTACAGTC
TATTATTATTTTTCGAAATTAACGATGTACTATTTCTTGGGGATGATACT
TGCTCTAATGGCTGTGTGGGATAGGTCAAAAGGTCCAACCAAGCAAAATG
ATTGGCTGCATAAATGATAATTTAAGTTCAACTTTTTAAGCTAAAAATCC
AAAAATTCATTATTGGGTTTTTTAATTAACTTTGCAAGTGGGGATGAAGC
TTCATTACAGCTTCTTGCCGGAGAGGAACCCCACCTCATGAAGCTGATTT
TTCAAGTGACTAACAAAATCATATTTCTCATAAGCTTTGGTAGCTTGCTA
ATTTAACAACTATATAGAATGTCCTCCCGTACACCACAAAGACTAATTAT
ATTTCATTCCATTGGTTTTCAGAGATGACATTCTGGCAATTACAACTACC
CGGCTATAGAAATGCACTTTTTCAACAAAACTCAATCGAAACAAACCTAG
GATACACTCCATGTTACTCGAGAATGGCCCAATGCGACGACTGGGCCAAA
GAGGGCCAATGTCAGGTACCGGCGCTACAATATTTCATGCATAAAAACTG
TTTTCGTAGTTGCACCAAATGCATTTTAGACAGGAACGAGCTGATAGACG
GTGGTTGGTCTACATG

Coding sequence (CDS) from alignment at sc0000078_pilon:295167..298832-

>MSTRG.10970.1.p1 ID=MSTRG.10970.1.p1|Name=MSTRG.10970.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3936bp|location=Sequence derived from alignment at sc0000078_pilon:295167..298832- (Clytia hemisphaerica_ch_hm2_pilon)
AGATGACATTCTGGCAATTACAACTACCCGGCTATAGAAATGCACTTTTT
CAACAAAACTCAATCGAAACAAACCTAGGATACACTCCATGTTACTCGAG
AATGGCCCAATGCGACGACTGGGCCAAAGAGGGCCAATGTCAGGTACCGG
CGCTACAATATTTCATGCATAAAAACTGTTTTCGTAGTTGCACCAAATGC
ATTTTAGACAGGAACGAGCTGATAGACGGTGGTTGGTCTACAGGCATTTC
AAACAGCTACTTTGGCAAGGATCTCAAAGATTTGGTGCTGGAATATCGTA
CAACAATGTAACAAGAAGTGGTTTTGTTGTCATGTTCTTCAAAGATTTGA
TCCAAGAACAATCCAAAGTCAAAATCCCTACAGAACCTTTACGCACGGTC
TTGGTATAGAAACGATTGATTCTGTTGGTCATCTTTCGCCGTTGGAGCAT
GGAAAAGTCATCGGAGCAAACCCTCCACCAATTTAAAGACACCAAAATTG
AAGATATTGATCGTTTAAATGAAGTCAAAGATGTTCGCTGGTCCCTTGAC
GATAGTCTGTTACTTAGCAACAAAGATGACAGCTTTAAGAACGAGAATGA
CGCCATTGACAGTGGCGTTACAAATCGTCATAAAGTTTTAAACCCTCACG
AACAATATTTTCCTAAAGATTTCGATGAAAAAAGCGCAATGAAAAAAGCG
ATGCTTGATTCGAATATTCAAGCGTGGCGTGATGTTGGTGAGTGCCAACA
CGCAATGAACGTACTTCGCGAGATTATCAAATGTGATATGTCTGTTTTAT
CATGGTCACTAACCTACGAAGCTGAAAAATGGGCTGTATTGTTAGCATCA
CGCCTGACGGATAAAACTGTGAGTGATAAAGTGCATTTGAGTCGATCATA
CGGAGATATGGGACAATTGATTTATTACGCAGAGGGGCTCTTTCAAGGAC
CTGGGTGTAACATGGCGATAACTGCTTGGTTAAGAGATGACATTCTGGCA
ATTACAACTACCCGGCTATAGAAATGCACTTTTTCAACAAAACTCAATCG
AAACAAACCTAGGATACACTCCATGTTACTCGAGAATGGCCCAATGCGAC
GACTGGGCCAAAGAGGGCCAATGTCAGGTACCGGCGCTACAATATTTCAT
GCATAAAAACTGTTTTCGTAGTTGCACCAAATGCATTTTAGACAGGAACG
AGCTGATAGACGGTGGTTGGTCTACAGGCATTTCAAACAGCTACTTTGGC
AAGGATCTCAAAGATTTGGTGCTGGAATATCGTACAACAATGTAACAAGA
AGTGGTTTTGTTGTCATGTTCTTCAAAGATTTGATCCAAGAACAATCCAA
AGTCAAAATCCCTACAGAACCTTTACGCACGGTCTTGGTATAGAAACGAT
TGATTCTGTTGGTCATCTTTCGCCGTTGGAGCATGGAAAAGTCATCGGAG
CAAACCCTCCACCAATTTAAAGACACCAAAATTGAAGATATTGATCGTTT
AAATGAAGTCAAAGATGTTCGCTGGTCCCTTGACGATAGTCTGTTACTTA
GCAACAAAGATGACAGCTTTAAGAACGAGAATGACGCCATTGACAGTGGC
GTTACAAATCGTCATAAAGTTTTAAACCCTCACGAACAATATTTTCCTAA
AGATTTCGATGAAAAAAGCGCAATGAAAAAAGCGATGCTTGATTCGAATA
TTCAAGCGTGGCGTGATGTTGGTGAGTGCCAACACGCAATGAACGTACTT
CGCGAGATTATCAAATGTGATATGTCTGTTTTATCATGGTCACTAACCTA
CGAAGCTGAAAAATGGGCTGTATTGTTAGCATCACGCCTGACGGATAAAA
CTGTGAGTGATAAAGTGCATTTGAGTCGATCATACGGAGATATGGGACAA
TTGATTTATTACGCAGAGGGGCTCTTTCAAGGACCTGGGTGTAACATGGC
GATAACTGCTTGGTTAAGAGATGACATTCTGGCAATTACAACTACCCGGC
TATAGAAATGCACTTTTTCAACAAAACTCAATCGAAACAAACCTAGGATA
CACTCCATGTTACTCGAGAATGGCCCAATGCGACGACTGGGCCAAAGAGG
GCCAATGTCAGGTACCGGCGCTACAATATTTCATGCATAAAAACTGTTTT
CGTAGTTGCACCAAATGCATTTTAGACAGGAACGAGCTGATAGACGGTGG
TTGGTCTACAGGCATTTCAAACAGCTACTTTGGCAAGGATCTCAAAGATT
TGGTGCTGGAATATCGTACAACAATGTAACAAGAAGTGGTTTTGTTGTCA
TGTTCTTCAAAGATTTGATCCAAGAACAATCCAAAGTCAAAATCCCTACA
GAACCTTTACGCACGGTCTTGGTATAGAAACGATTGATTCTGTTGGTCAT
CTTTCGCCGTTGGAGCATGGAAAAGTCATCGGAGCAAACCCTCCACCAAT
TTAAAGACACCAAAATTGAAGATATTGATCGTTTAAATGAAGTCAAAGAT
GTTCGCTGGTCCCTTGACGATAGTCTGTTACTTAGCAACAAAGATGACAG
CTTTAAGAACGAGAATGACGCCATTGACAGTGGCGTTACAAATCGTCATA
AAGTTTTAAACCCTCACGAACAATATTTTCCTAAAGATTTCGATGAAAAA
AGCGCAATGAAAAAAGCGATGCTTGATTCGAATATTCAAGCGTGGCGTGA
TGTTGGTGAGTGCCAACACGCAATGAACGTACTTCGCGAGATTATCAAAT
GTGATATGTCTGTTTTATCATGGTCACTAACCTACGAAGCTGAAAAATGG
GCTGTATTGTTAGCATCACGCCTGACGGATAAAACTGTGAGTGATAAAGT
GCATTTGAGTCGATCATACGGAGATATGGGACAATTGATTTATTACGCAG
AGGGGCTCTTTCAAGGACCTGGGTGTAACATGGCGATAACTGCTTGGTTA
AGAGATGACATTCTGGCAATTACAACTACCCGGCTATAGAAATGCACTTT
TTCAACAAAACTCAATCGAAACAAACCTAGGATACACTCCATGTTACTCG
AGAATGGCCCAATGCGACGACTGGGCCAAAGAGGGCCAATGTCAGGTACC
GGCGCTACAATATTTCATGCATAAAAACTGTTTTCGTAGTTGCACCAAAT
GCATTTTAGACAGGAACGAGCTGATAGACGGTGGTTGGTCTACAGGCATT
TCAAACAGCTACTTTGGCAAGGATCTCAAAGATTTGGTGCTGGAATATCG
TACAACAATGTAACAAGAAGTGGTTTTGTTGTCATGTTCTTCAAAGATTT
GATCCAAGAACAATCCAAAGTCAAAATCCCTACAGAACCTTTACGCACGG
TCTTGGTATAGAAACGATTGATTCTGTTGGTCATCTTTCGCCGTTGGAGC
ATGGAAAAGTCATCGGAGCAAACCCTCCACCAATTTAAAGACACCAAAAT
TGAAGATATTGATCGTTTAAATGAAGTCAAAGATGTTCGCTGGTCCCTTG
ACGATAGTCTGTTACTTAGCAACAAAGATGACAGCTTTAAGAACGAGAAT
GACGCCATTGACAGTGGCGTTACAAATCGTCATAAAGTTTTAAACCCTCA
CGAACAATATTTTCCTAAAGATTTCGATGAAAAAAGCGCAATGAAAAAAG
CGATGCTTGATTCGAATATTCAAGCGTGGCGTGATGTTGGTGAGTGCCAA
CACGCAATGAACGTACTTCGCGAGATTATCAAATGTGATATGTCTGTTTT
ATCATGGTCACTAACCTACGAAGCTGAAAAATGGGCTGTATTGTTAGCAT
CACGCCTGACGGATAAAACTGTGAGTGATAAAGTGCATTTGAGTCGATCA
TACGGAGATATGGGACAATTGATTTATTACGCAGAGGGGCTCTTTCAAGG
ACCTGGGTGTAACATGGCGATAACTGCTTGGTTAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10970MSTRG.10970Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10970.1.p1.exon4MSTRG.10970.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10970.1.p1.exon3MSTRG.10970.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10970.1.p1.exon2MSTRG.10970.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10970.1.p1.exon1MSTRG.10970.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10970.1.p1MSTRG.10970.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078_pilongenomesc0000078_pilon:295167..298832 -