MSTRG.10950.4.p1 (mRNA) -

Overview
NameMSTRG.10950.4.p1
Unique NameMSTRG.10950.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:19048..27034-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10950.4.p1 ID=MSTRG.10950.4.p1|Name=MSTRG.10950.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7987bp|location=Sequence derived from alignment at sc0000078_pilon:19048..27034- (Clytia hemisphaerica_ch_hm2_pilon)
TCTGCTAAATCCGTTTTGGAACTCAGGGAAACTTAGAAAGTGAAAGTGAA
AGTGAGTTCAGATCCAGGCTACAAAACACTTGAAGTCTACAGCAGTCATC
AAGGTCAAGGTATTCTTTTTGTTTCCTTTTTCTCAATGTTAAGTGTTTTT
TCAACGGGAGACAGTATATTTGAAGCTGGGGATTTAGTCACTGACTGGCG
GGGGAGGGGGTCACTGACCTCTTTAACTCAATAACTGTTTTACTTTTGAT
AACTTCAATAATTAACCAATTAATTGATTGCTTCGATAGACGACCCTGCC
TATGCCCCGGACAGTCCGGGGTTTTTTTGATGCGTGCCCGGGGTCCGTAT
TATTTGTTTTTGAGAGACTACCCCGGATAACGGTAGCAGAAACTGAATCT
TTAATGGAGTTTTGGAATTCAATCTTTATGAAAAATAAAATTAGCTATGG
AAAAAGGTAAATTAGTGAAAAATGTTTTCAAATATTTGATATTAGCTATA
GCACTTAATTTCGCAAAAAGCAGTGTAGCTGGAACCTCGATATTCCAGGA
TTAGAAAAAGCTATACCTGTTATCTTTTTTTTTTAAAGAATCAACAAGCC
ATCAACATCGATAAATTACACACATTCCCTCAGAAACTTTTAAAATTAAC
TGCCATTATGACTTTCTTGAAGCCGTTCCGAAATTAACCAATCGGGTTAG
GTATCGGAATTCCTATGGGAGTTCTTTTCCGAGATTTGTAAAATAGCTAA
GTCAGCAAAAAAACTTTTCCCGGGGGTTTGAGGAATAAACAGAACTGTTA
TCATTCGTTTTTTATTCAACCGTATATTTAAATTTGCGCTAAAAAATACT
CTAATAAATAAGTTAATAATATTCAAATATACTATTTGTATCTCTCAGAA
AATAAACACTTACAGAACGACATAGTTTATCATTTAGACTACCCCCGTGT
TTGGACCATTCTATCGTAGGCGCAAAATAGGGTGGAAACTAAGAAGCACC
CTCAGTGCAAGATTCCCGCCTCATCTTTATTCGCCCGCACGAAAACGAGC
TAGTCGTTTTTTTCTCGCGCGCTCAAGGGGAAAAGGAAAGTGATTGATAT
TCTTTGAAAAAAATACGTCAGAAACAAACCCAAAGACCAAAAGATGTATT
TTGTTGTTGAGAATCGATCCTGTAAAGATGAAAAAATTTCTGCAATGCGT
TTTTTTCGTAACGCTGAAAAACTCTAATTTCGATCTTCCTTAAGGTAAAG
AGGTTACGAGATTTGGGCTAGCGAGGCAAAAATCGCTAAAAAACTGGTAA
AATCGTAATCCTCAAAAATCGAAGTTCCAGCCTCACTGAAAAGGCATAAT
TTTCTTAGGGCTTTGCCCCAAAGACCACACTAGGACTGTCCTGGACCAGT
TGATTGGGCTGTTCACAAGGCCCCAGACCTCCTGTCTGCTTTTTTCGAGC
CTAAGGCACATTCTGAAACTTTTGATTAAAAACAGTAGCAGCTCCAAATC
CTGGAAATTTGCCTGATAGCCAATTGATTTCATTAAATATATAGTGAAGA
TATGTAATATCTGTCATTTTAGAAAAAGAAAAGTATTGATATATAAATAA
CTCAAACTGATAAAAACGAAAAAAGTTAAGAATATTTTTGTTAATTGTGT
GTATTTACGATTTTTTTGGTATTTTTTATTTTTTAATCATTCCGAAACAG
AGGGTAATTTAGCAAAACGTTAAAGGAATTTAAAATAGTGGTATGTGAAA
GAAAAACCTAATCCAAATAAAGATAGAAGAAAAGTAATAGTGGAGAAACA
ATGAATTGCAAAAAACTTTTTTGATAAACACACTTCCGAAGTTCATCAAA
ATTACATACCAAAATGGGGACAAATACAAAAGCAAACACATCAAATAAAT
TTAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAGATACATAAACAAA
CCAAAACCCGAAGTCCCCGACTTGTGATGCATAGTGACTTTCCACGTGTT
TAAGGGCCCACACTCGTCGCCTTCGGAACACATAGTAAAAAGGAAACTGA
CCAGCAGCTTCCAAATAAATAACAGACAACAAACAGACACTACAACAAAA
TACAGTACAAAGGGCAGAAAGACACCTGTACCACTATCCACGTACACTAC
AGGTGAAACAAACATTTGTAACAAACACAATCTTACATAAAAATAGAAAA
AATCACACAAAAACTGAAAAGAATAGAATCGTAAGTTGGCCGAGAACCCG
GTTCGGCGTGCCGCGACGGGAGGACTGCACAGGGCAAAGAAAAGTAGGAA
ATGAATACCTCCGATGCTAATGCTAATTCTTTAGACAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAATATATATATATACAATGAAAAATGCAA
AATCCAAACAAAAATTAATAGACATTGAAACTAAACTAAAGCTATCCTAC
GAATCAGAGAAGAAAAGCCAGGAAAGGAAGGCAACAGAAATCAATAAAAA
ACAATCCTAAATTTTTTTATGCATATGCAAAAAAAGCATCGTAATCAAAA
TCCAAAGTTGGACCACTGCGTGACAAAAATAATTCCTTGATATATGATGC
TGACCGTATTGCTAATATACTCCAAGACCAATACACATCGGTTTTCAGTG
TACCATCGGAAAATGACGTCACTCATCCAACAATATGTCCAAACGTGCTA
AAAGACATAGACTTTGACGAAAAAGATTTCATTGAAGCAACTCAACATTG
TCACCAAACTCTGCTCCAGGTCCTGATGGATTTCCTGCGATTTTGCTGAA
AAATTGCAAAGAAGAACTTGCCAAGCCACTCGCAATATTCTGGAGGAACT
GTCTGAACCATGGAGTAACAGAGGAGATTCACAAAAGAAATCATATCACA
CCAATATCAAAGGGTGGAGATCAAGGAGAGCCATCTAACTACAGGCCAGT
ATCACTTACGTCCCATCTCACCAAGGTGTTTGAAAAAATAGTTCGAAAGA
AGATAGTCGAATTTATCAACAACAATGACTTGTTCAACCCAACACAGCAT
GGTTTCCAGGAAGGGCGATCATGCCTTAGTCAATTACTCAGCCACTATGA
CAGTATCCTATCAAAACTAGAAGAAGGATTGGATGTAGATGCTGTATATC
TCGATTTTTCAAAAGCATTTGATAAAGTCGACCACAGGATACTGCTATCA
AAACTGAAATCTATTGGAATAACAGACAAACTACTTAAATGGATTAAGTC
ATTTCTTCAAGACAGAAACCAAGTAGTATTTGTAGACGGTCACAAGTCGT
ACCAGGCAAAAATTCAGGAGTACCTCAAGGATCGGTTCTTGGGCCATTAT
TCTTCATCATCATGATATCAGACATTGATGAAGGGACAACCAAAGCAGAA
CTTGCAAGTTTTGCTGATGACACACGAGTAAAGAAAGGAATCCAAAACAC
ATTGACAGTTTTCACCTACAAAACGACCTTAACAATGTTTATCAATGGTC
GACCATAAACAAAATGATGTTAAATGGAAAAAAGTTCGAGCATCTCCATT
ATGGAAACGGACCAGCCACCAGTTATTTCACAGGTGAAGTGAAGGAAAGA
TAATCCAAACCAAATCTTCAACAAGGGATCTTGGTGTTACCATGTCAGAC
GATGCGAAATTCAACCAACATATTCTAACCATTGTAGAAAAAGTACAGAT
ACTCATTGGTTGGATTCTGAGAACATTCAGCTCAAGAGAACATGATGTCA
TGCTCACTCTTTGGAAGTCTTTAGTCATACCACACATCGACAACTGTTCT
CAACTATGGTCACCCAATGAAGTTAATCTGATCCAGCAGATCGAAGATCT
CCAAAAATCATTCATAAGGAGGATTAAAAACCTACACAACCAAAACTATT
GGGAAAGACTACAAACATTAAAACTGTTTTCGCTGCAGAGAAGGCGTGAA
AGATATATTATCATATACACTTGGTGTATTATTGAGAAGCTTGTCCCAAA
TCCTGGGACAATCACGTTCTATGCCAATCCCAGACAAGGAAGAAAATGTC
ACATACCACTAGTGAAAAGGGGGCCCTAGTCTGGCGGCGATCCAGGATCA
CCCTTACAATTAGTAAATATGGGTTTTTATTTTATTTTCCCATCATATGG
TCCCTTGGGACCCCAAAACCAGTTTTTGCCAAGCTGGCAAAGCCGGGGAA
AATTTTTTATGGGGGCTTGAAGGGGGTAGGGTCATTTTAGCCTGGGAGTC
CTTAGAAAGTCGATTTTTGAAGTTCTTATTTAGCTAAAACTGATTGTGCC
ATCAGATAGAGCTTGAAAAGTAGATCTCCAAAATGGGGTCATTTGTCTCA
TTTGGCGGACTAAGTCCCCCGGAATTGGCCGATACGTCTTCAAAAATGCA
ATATTTTGTGCTGACGTCAGCATTTTTGAGAAAATTTTCAGCGAAAGATA
CCAATTTTAACAGATGCGTCTCGAAGTGTACTATCGATTAGAGGGGTCAT
TTATAGGGTTTCCTAGGCTAGATCATGAGATATTTGAGTTTGAAATTTTG
CTGACTCAGCGTTTTTCAACGTTTTTGGCCCTTTTCTGCTGAGTCAGCAA
AATTTCAAACTCTTATATCTCATGATCTAGCCTAGGAAACCCTATAAATG
ACCCCTCTAATCGATAGTACTCTTCGAGACGCATCTGTTAAAAGTGGTAT
CTTTCGCTGGAAATTCTCTCAAAAATGCTGACGTCAGCATAAAATATTGC
ATTTTTGAAGACGTATCAGCCAATTCCGGGGGACTAAGTCCACCAAATGA
GACAAATGACCCCATTTTGGAGATCTACTCTTCAAGCTCTATCTGATGGT
ACAATCAGTTTTAGCTAAATGAGAACTTCGAAAATCGACTTTCTAAGGAC
CCCTAGGCTAAAATGACCCTACCCCCTTCAAGCCCCCATAAAAAATTTTC
CCCACCTTTGCCAGCTTGGCAAAAACCAGTTTTGGGGTCCCAAGGGACCA
TATAATGAGAAAATAAAATAAAAACCCATATTTACTACTTGTAAGGGTTG
ATGCAAAAAAGCCCTTTTCGCCGCCGGACTACCCTGGCAAAAAGTCATAT
ACTCAAGTTTTAAAGTCCAAGGACCAAGGCTTTTCAACTCGCTGCCAAAA
CGTCTGAGGGATCTCACTGGGTGCAAGAAATTGAAATTCAAAACTGAGCT
GGATAAATATCTTTTTACAGTTCCCGACGAACCACTCGTGACTGGCTACA
CTATGATGAGACGAGCTGAAACAAACAGCATCATCAATATGAAAATTTAC
ATCGGTCCTCACAGGATGGATGCGTAAAGATATTACGAAACAAGCTCAAG
GTAACTCAAGGTAAGGTACAGATATCTTTGAAAAAAAAACATTGACCTAA
AAGCAAAGCACAAAAAGAAGCATGCGAAGCACCAGCCAAAAGCAAAATAA
ACTTCAGTAATTTTACCGCCGCCATCCATTCTGCCATTTTGTGTACGTTT
GCCCTGGGCCTGGGTTTTCTCAAGTAGTTTACATCACACATACTGATTGG
TTGGAGAAAACAATAGTGGTTTTATGCGTGGGGATTGCGCGTTTAATTGG
GCGAAATAAAATCGGTTTCAGATTCCTGAAGCCAGGCCAAATTGATAGTT
TGGTTCGTGTCCACCGAGTCCGACCAACTCTAAATTTTTTAGAAAAAGTG
TTTCACTTTGAGTCGGAAAAATCAAAAAAATTTTACCTCCTTTTCACATG
ATAACTACTATCTCTGCAGTACTTTTTTAACTGACTGCTTTGATTCTTCT
ATAAAGGACACAAACCAAACAATCAATTGGGCCTGGCCTCAGGAAATATA
TATTCGATACAATCGAAGGTATTCAATATGATCGAACAAATCGAAAATGA
TCGACACATATATATCATATATCATAGAACTAATCAAACTTTTTACTGAC
CGAACTAATCAAACTACTATTGCTTCAAAAATTGTGATTGGGTTCGATTG
ATTTTTTAAATTGAACTTTAATCGTTCGATGGAGTTATATTAGTTCAATT
GTTTGATTGGTATGACAAGTTCGATTGATTGGGCCTGGTTTAATTTAAGG
GATAAAGACGTTATGCTCCCATTGTGGAGATCATTCTTACCTCGATTATT
GCTCTCAACTATGGAATCCACTTGAAAAAGAGATTATTCAATTCAGCAAA
TTCAAAGGTCTTTCACAAGACAAATCGATGGTCTAAAAGTAAAGATTACT
GGAAAAGACAGAAAAACCTGAAGATGTACCCGCTACAATGGGGCAAAGAA
AGGTTATATATGGTTACCCTATAGCACCCGTTTAACTTTTACATCATACA
GTGACGTCATAAAAAGTTTTGCCTACTTCAAATTTTCACCAAAAATTTCC
ATAAATTGTCTGTCGCAATGGAAGACTCTACAGTATGTTATGTTTTATTC
TTGACTAAATTTTCTCAATTTTTTTAGAGTGCTCACATAATGTTTTCAAA
GGAGCTCCTCATATTTGATGGTGGATTTGCTTCTCAACTGGTTAAAGATG
GCCACGATATTTATGTGAGATTTTGATCAATCTTTTATTTGTATTTATTC
TGGAATCGATTTAACATATCAAACCTAATAATTAATACTTAACAATTTTA
AAAATATCATGTTACAGTTTATTTTGCACACAACAAACACCAAATCCTTT
GATTGGAAATTTTACTTTACGCTTTCCTTAAAAAATAATGAAAATAATTC
ATGTTTTTTTCAGGATGATCCATTATGGAGTGCAAGACTATTACATTCAA
ACCCTAATGTTATAAAAAGTACACATAGAAAGTGAGAGCCCTCCTTTAAA
CAAATATTTCAACTGTCAACATCTTACATGTTAAAGATTTAATTCTGACT
GAAGTATCCTGGTTTCATCAAGTTGATTGAAAAAAACAAGTATAAACACA
ATTAAAAAAAAGTTTCAAAGTGTTCAAGAAATATATTGCATGAAGAAACA
TTTAAGCAGAAATTCTTAAATAGCACTTTTTTTCCTTGAATTGATGATTT
CTAAAATATTTTCTTAAATTTTTTGAGAAACTGCTCAAATTCACTGTTTT
CACTGGAGAAACTGGCGGCTTACTTTTTCTTAACTGTCTCCCTTAATCAG
GGGAGAGTGCAACTCTTTACTCGGATTTCTCTTCTTACTCTTGTTCCTTG
TTTTCGGTTGGTGAGCATCAAGCAGACAGGCATCAAGTACCATTTTTGAG
GTATTCGTTATGATTTGGTTGGGTGTCAATGTAGATGTCAGTACCAAAAG
CATAATTTGAATACAAAGTACTACTTGTATTTCTATTATTTTTTTTAGAT
TTTTAGAGGCCGGAGCTGATGCAGTTATATCCTCATCTTACCAGGTTTGC
ATAAAATTGACAAAATTTGTGTTTGATTTACATTCAACTCACTAATTAAT
CCAATTGTTTTGAATTTCTCTGTAACTCGAACTAAAATGTTGGTCCCTTA
AGCTAGAAACTATATAGAATATATGAAACTATGCCCCGTAATTTGATTTT
GAGTCTTTTTCTAAGTCTAACTCGAGGAAGAATTTTTCCTTGAAAATCGG
ATTGGGCTATTTCAAAAATAGTCTGTACTCCCTATGTTTAGGAGGTGTGA
TGTCCAGGGTGGTCGGGAAAATAAAAAATCCAGGGTGGTCAGTAAAACGA
GGTCGAAGATCCAGGGTGGTCCAAAAACTAGAATTACTATTAGAATTTTT
AGTGGACATAGAATTACTATTAGAATTTTTACTAGCCATAAGATGGGAAG
AAATTTGCCCATAAAAAAATGACTAGAATTGACCAAAAAGTAACAATAAT
TAATTTTTTCTACAGGCCAGTTTGAAAGGTTTCGAGAAGTATTTGAACTG
CAGCATTGAAGAAGCCAAAGAATTGATGAAACTTTCAGCAAAACTTGTGA
AGGATGCATGTGAAGAATTCTGGCAAGTCCACCAAAA

Coding sequence (CDS) from alignment at sc0000078_pilon:19048..27034-

>MSTRG.10950.4.p1 ID=MSTRG.10950.4.p1|Name=MSTRG.10950.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0000078_pilon:19048..27034- (Clytia hemisphaerica_ch_hm2_pilon)
GCCAGTTTGAAAGGTTTCGAGAAGTATTTGAACTGCAGCATTGAAGAAGC
CAAAGAATTGATGAAACTTTCAGCAAAACTTGTGAAGGATGCATGTGAAG
AATTCTGGCAAGTCCACCAAATTTTTAGAGGCCGGAGCTGATGCAGTTAT
ATCCTCATCTTACCAGGATGATCCATTATGGAGTGCAAGACTATTACATT
CAAACCCTAATGTTATAAAAAGTACACATAGAAAATGTTTTCAAAGGAGC
TCCTCATATTTGATGGTGGATTTGCTTCTCAACTGGTTAAAGATGGCCAC
GATATTTATGCCAGTTTGAAAGGTTTCGAGAAGTATTTGAACTGCAGCAT
TGAAGAAGCCAAAGAATTGATGAAACTTTCAGCAAAACTTGTGAAGGATG
CATGTGAAGAATTCTGGCAAGTCCACCAAATTTTTAGAGGCCGGAGCTGA
TGCAGTTATATCCTCATCTTACCAGGATGATCCATTATGGAGTGCAAGAC
TATTACATTCAAACCCTAATGTTATAAAAAGTACACATAGAAAATGTTTT
CAAAGGAGCTCCTCATATTTGATGGTGGATTTGCTTCTCAACTGGTTAAA
GATGGCCACGATATTTATGCCAGTTTGAAAGGTTTCGAGAAGTATTTGAA
CTGCAGCATTGAAGAAGCCAAAGAATTGATGAAACTTTCAGCAAAACTTG
TGAAGGATGCATGTGAAGAATTCTGGCAAGTCCACCAAATTTTTAGAGGC
CGGAGCTGATGCAGTTATATCCTCATCTTACCAGGATGATCCATTATGGA
GTGCAAGACTATTACATTCAAACCCTAATGTTATAAAAAGTACACATAGA
AAATGTTTTCAAAGGAGCTCCTCATATTTGATGGTGGATTTGCTTCTCAA
CTGGTTAAAGATGGCCACGATATTTATGCCAGTTTGAAAGGTTTCGAGAA
GTATTTGAACTGCAGCATTGAAGAAGCCAAAGAATTGATGAAACTTTCAG
CAAAACTTGTGAAGGATGCATGTGAAGAATTCTGGCAAGTCCACCAAATT
TTTAGAGGCCGGAGCTGATGCAGTTATATCCTCATCTTACCAGGATGATC
CATTATGGAGTGCAAGACTATTACATTCAAACCCTAATGTTATAAAAAGT
ACACATAGAAAATGTTTTCAAAGGAGCTCCTCATATTTGATGGTGGATTT
GCTTCTCAACTGGTTAAAGATGGCCACGATATTTAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10950MSTRG.10950Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10950.4.p1MSTRG.10950.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10950.4.p1.exon5MSTRG.10950.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10950.4.p1.exon4MSTRG.10950.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10950.4.p1.exon3MSTRG.10950.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10950.4.p1.exon2MSTRG.10950.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10950.4.p1.exon1MSTRG.10950.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078_pilongenomesc0000078_pilon:19048..27034 -