MSTRG.10800.4.p4 (mRNA) -

Overview
NameMSTRG.10800.4.p4
Unique NameMSTRG.10800.4.p4
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000076_pilon:961428..970431-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10800.4.p4 ID=MSTRG.10800.4.p4|Name=MSTRG.10800.4.p4|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9004bp|location=Sequence derived from alignment at sc0000076_pilon:961428..970431- (Clytia hemisphaerica_ch_hm2_pilon)
GACGAGAGAGCTATTAAAAGGCTGTAAAAGAAAAAAAGATCGATGAATAG
AAGTTGATGAGTTATTTAACGAGTATCTCAGGATTTGGAATAAAAATCAT
TTATTAATGCAGCTTGATTGAGAAAGGACATGAAAACAAAAGTGTAGTTT
TTTTTTGAATAGTAGTTATTCATATTTGAGGGATTAGGGATTCAATTGAT
AACAGTCGCAGTTGCGAAGGTAATGTTTGTTCTATGAAACAACAGGTTAA
AATTGAATATTTCCTTGGGTTATTTTTGAAATCCCCCTTTGGGGTAAATG
AAGACTAGCTGCTGAGTTCTTCCAGAAATTTGGTGAAAAATTTACTTTTC
TTCAAATCTTTGAAGATTATCTTTTCACTTGAACTCTTTTTATACATTTT
CTATTGAATTTTCTTCATTCTATACCTTTTTAATAATGGCAGACCTTGTA
AGCCTTTATTGCCGAGTGCAAGGTAAGTAAGAATGTAAAAGTTGTTCACT
CGAACCTCAAGTGGACCTCGCAGATATGGGAGTGCTTTATCAGCCAGGAT
GTTGTAATTTTATATTGCATAGATTGTCAAAGGCTTTATTTATCAATTAA
ATAAAACGGCAGATGACTCGGATGTGAAAAAGTTAAAGATTCTTTTGCTG
TTTGACAAATGGCCTTAATTTCAACCTTGGTGACGGCTATGTAAATTTGC
ACTAAATTAAACACAACTATCGACACGACTCGTTTTCGTTTCAAAGGAAG
TTTTCCGATCAAATCAGGTGCCAAAAGAGGTGATTGGTATTTTAAAAGAG
CCTGGAATATTTCAACTTTTATTACAAATTCTTTTCTTTCAGATCCACCA
GCGGTGCGAATCAAGAAATCTCGATCATTCGAACTCGATAGAAAAGCGGA
AGTCATGATCAACAAGGATCAAACCTTCGAATCCAAATATGAACTCCTGG
AGGAGCTTGGAAAGTAAGCAGCCTTGCTATTTTTATTTTTCCGCTTTCAA
TTTCCTATCTAGCAAAAGAGTAGTTTTAGCTTGCTTTTTTGCTTTTTTGC
TTCTATTTTCAAACTCAAGCAACAAAAGCAATAAACTGCCTGTTTGAGAT
GTTTCTTTTTAAGACATTTGATGGATATTAGGGATTTATCATAGCAGCAA
TGATACTTTCACACGTGTTCGGTAATCCAAAGGGATCCGTTTCAGACCAG
TTAGAGCTTACAAAGGATCGATATTTCGGGAATATTTCGCTTGACGAAAG
TATCCTACTTTTAGTGGTTTGTTTACTTTTTTAGGGTTTTAATCTTTCGG
CTTATGGATCGGTTTTCTCTACAGAAAGATTGACGTGACTGTGTTATTAA
GTAGAGGGTATCTTAATACCAAAAAGTCACTATTTTCCAAGTTTGGATTC
CTATGTCGGCCTTCATTTCAATAGATTAAGATAATCGGATGATCTGAAGT
AAACATGAAGCCCAAAAGTTCACAGAGAACCAAATTTTAAACAAAATGGT
GTCAAATCCGACAAAAGGCTGGCTACAATTTTTTTTCAGATAATCTTTCC
CGTGTCATTTCTGTTATTTTTGTGTGTCCTGTTATTAATGGCAACAAAAT
CCTTAACTGTAATTATGATTAGCTGTCGTTGGAAATCAAACTTAAAATAA
AATTCTGGAACGAGAAGGAAAATTTGAAAAAATACTGAAATGTCTATTCT
AAATAAGGATTTGCTTTTCCGGGAGACGTCATTTGGTCTATCATCGCAGT
TATTTTTTTCAAATTCATTAAATTTCTGATGATGTTGGTGTTTGTTTTGA
TTACTGGTAGTAACAATAAATGGATAGTAACAGTTAATAAAAACAAATTA
GCGTTTTTCCCTTTCTCAAAATTGAACGTCATTTGCGATTTAAAGTGCTC
TTCCTTATGCCTGAATCAAATGACCTCGGACTTAAGAGGACCTCCTGGAC
GTTATATTTCGGCTTTTCGGCTTGGGATCCCTTAAATATAACCTCAACGA
AAAAAAACCTCTTATCAACCCAGATGTTTTTTTGGCAATGACTATGATAT
AATCATTGTGAACAGCTTTTTGTGGGATGAGACACTTCACCTAAAAAGCG
CGTTGTGGTGTGTTTCCTGTCAGTTAAACATCATTTGCAATAATTTGCAC
AATTTAATTAACTTGAAACATTATTAGCAGAATCATTAGTATAATTATTC
AAAAGTCGTAAAAAATTTATTGGATGTTATACAATATAGTTGATCACTTT
TCTTCCACGGCAAAGAAAAAGAGGCCCATCTCACCCTCCTCCATCCTCTC
CCCATTTTTCCCCCTGGAAAATTCACAGGACAAAGTGAACCACCTAAAAA
GAATGACAATTTCGAAAGAAATTTTTGTGATTTTGATTCTAAGAATGTTT
ATCCTAGATTTATTCGCCTGGCATCGGGCCTTTTATTAGCATATTGCTGT
TCGTGGTGCTCTGTGTGTCCATTTTTGAGAAATCAGCGCTTTGTCAATTT
CAAGTTAATTTTTAAAGAACAGCGCCTTGTAACTACAACGTCTACGCAAA
CATTCGACTATTGCTATGTCGCTTGGCCTTAATGCCGCTTTGTTGTATTT
TATCAAAATAAAGAAAAAGTGAGAGTACCAAATACATGAAAATAATGAAA
AAGTTCCAATCGCAAGAATCTTTTAAGGTTTTATTACACTATTTTATTTC
TACGTTTGTATCAGGGGTATGTTCGGCACCGTCAAAAAATGTCAGTGTAC
AGACACCGGCGTCGAATATGCGGCCAAAGTGGTCAGAAAGACAACAAAAA
ACAAAGAAGAAGTTGTACGTGAAGTATCCACTATGAACCTATTACAACAT
AAATCCATTGCTCAAATCCACGATGCGTTCGAAAGCAAAAGACAGATGGT
TATTGTCATGGAATTGATTCGCGGAAAAGAATTATTCGAGAAAGTTTGTC
AGGAGGATACTTTACTGACTGAGAAACAATGTGTTTATTATTTACGACAA
ATTTTATCGGGTGTGGAATACATGCATAAAAAGAAGATTGTACATCTAGA
TCTGAAGGTGAGTAGCTTCATTTTGGTAAACTTAGCCTTAGGGGGCATGG
TCCTTTGCCGAAATGATGCCAGAAAATGAACACATTAACCTCGAACAAGA
TTTAAGTTCTATCTCAGTCTTACAAGGATGACTAGCTATTTTTTATTTTC
AGATATTTTCAGACTGCCTAGCTTTGAGAAGTCAATCCAAAATAGCAGTA
GTTATACATGAAACGAGATGAAATCACTTATATTTACACTGAAAAATAGC
TGATTATCTCTCTACTAAAAACACACTCTATAGAAACCATTTCATTTCAA
TATCTTTTCCTCGTTTTCAGCCGGAGAACATTCTGTGCATCGATTCACCA
CAAGGTTATGATGAAATCAAACTGATCGATTTCGGTTTAGCGAGAGATTT
GTCATCCACCAAACAGTTATCCTGTATTTGCGGGACTCCTGAATTCGTTG
GTAAGTCTATGTAGTTGCTTTAGTCCTGCAGATAAGGATTTAAATAGACC
TTTTCATAAACTACGTTACGAACATCACTTGCCTCGTTTTGAAATTATTG
CCATGGTGATCAACTCCCAGCGGATTTTATTAAAACTACTTCCTATTCAT
AAAATAATTTATTAACACCATGGTAATTGTTTGAATACGAGGCAAGTGAT
GTTCGTGACGTAATTTATGAAAAGGTCTATCAATATAGCCTTAACTGATG
CTTTGACGTTGTTTTGATTTTTTAAGCAAGCCGGGTGGGTCACCTTCCAA
AACGGATTTTGAATGTATAAAACCAGGACCAGCAAATTTAGAATTTCTAC
CGTCGTTCTGGTTAAGATAACATTTTCCGTATTGAGATAACTATGGATAT
TTCTGATGCTTTTATTTCACGGGTTAACCGGATGCAAAAGTTCCTCTTCA
GGGGTTTTAAGATATCTTTTGTCCAACCGATATAATGAATAACTTTCTGG
GGCTTATTCTCGAATTAGCCAATACCCTGGTCTTTTTCCGATGAAGAGTG
GTCATTGACGTCTTGTCAGAATGTAGTGGCATCCTTTCAGAAGAAAAGTA
TTTCACACTCATAAATCAACACTTTTCTCTTTCCAGCTCCCGAAGTCATC
AATTTCGATCCAATCAGCGTCCAATCAGACATGTGGTCATTAGGAGTCAT
AACGTACGTCTTATTAAGTGGGATCTCTCCTTTCCTTGGTGATGATGATG
GTGAAACATTGCAGAATGTCACTTTCGGTGAATTCGACTTTGAGGATGAA
GATGGTGCTTTTGAACACGTTTCTGAAATAGCTAAAGAATTCATTTCAGA
TCTACTCTGTCTGAATCCAAGGTATGTACATTCCCTGCTGACATACAACG
TTGTTTTAACGTTCATCTAATGTTCACAACGTCCATATAATGTTGGGTTG
AAGATCTTCGTCGAACCTTCATGACCAGGTGAAGTTAGCACATTAGTATC
CGTAGCTTCATCAAGTCAGGAGGTATAAGCACCCCCTGGTCAAGCGTTAA
ATAATATGCATTTCATTTGCTTTATTATTTTCTATTGGGATCTGTTTCCT
CGTTGTCATTCGTTGCTTTTTTAGATCTGCAAACAAGAAAAAAGATGAAA
TTACGATAGTCTGCATGAACCAGATGGAGGAAATTTTTACTATAAATTCA
AATCGTTTCTTTTAGGGACCGTTTATCTGTGGGAGACTGTTTGGAACATT
CCTGGTTAAACGTAAGTTCCATAATAGTATCACTCCATATCCTCGCTTTA
GTTTAACTGTCTTGAGCTGATTAAAGTTTAAAAGAATAAATACTTTAGTT
TCAGCCAGAACAGCTTCCCTTTTACCCAATAAGATTTGTACTTTCGAGGG
CGATGGAGTATGTCTGAAGCGATTTGGAATAACTCGCAACTTTGTCCAGC
AAAATCGAGGACGAAAACAGTGCTGATCAGGCCTATCCCGGAAGAGAACT
TAATCAATCCGTAGATGATCTATTGTTGAAGTTTTTTTACAGTTGTAAAT
CAATGTTTTCCCACTAGTAAACGAAAGTCTTCCCCATAAGTGAACCAATA
TTTTCCACATCTTCGTTCAGACACAAACAAACGAGGAAGAATTAGACACC
ACCAATCTAAAGAAATTCATCGCAAGGCGACGGTGGCTGGTACGTACTAA
CATATCCAATCCATTACGTAATAGCTTCTACTATACAACAAGGAAACGAT
AAAATCTTTTGTAGTCTTAAGGGTATTTATCAACTATCTGTGTTAAAGAC
ACCTTTCAGCCTATACTTTTTACCGCAATGTTCGATCATAATAATGTCTT
AAAAACCGTAAATTTGGAGCCCCAAAGAAAACATTCACGCAATTGTACGT
GGCCGTGTTTCTAATTTTGCATATAGCCTCCAAATCTAAGTTACAATGCG
TCGTCCACATGTCTAAAGGTTCAATCTCAAAATAAGTGTCTTGGAAAATT
AGAAATCTTGCAATTCTGTTCTGCCTTTGAGATTGGCCTTTGTGTCATAT
GAAAACATTGACTATTCCTCTACAAGAAAAAAGGGCAATCTCAAAGATGA
TCCACCACAGTAAAACTTTTAATTTTACAAGGTACTGATTTTGAGATTTA
ACCTTTAGTCATGTGAACGGCGAATGCAGACACTAAAATAGTTTTCATTA
ATATGTTCGCTGATGAAAAATCGTTTTCGAAAAAATTACTCTTGTCTCTC
GAATGGACGTCCCCCCCCCCACTAATTGTCAGGAGAACAAAAATCCATCA
CCCCGCTCTTATTAAGACTTAAGACCCCCCCCGCTAATTAAATTCGAATA
ATTTAATATTTATTACAGTGTAGATAGACCTTAAACTTGTTAAAATTTTC
CTTTTTGTTGTTTAAATTTATATCCGTTTAAAAAAATGTTGTCTTCAAAT
TACCCCCCCCCCTTCTTATTCCATCCCCCCGCTTATTAGAATCTAGAAAA
TTTTCCTACCCTCCGCTTATTCGGACCCCCCCCCCCGTCTATTCGGGAGA
CAAGAGTAGTATTATAATCATTATTTGATCTTTTCTTTTTAGCGTACAAT
ACACGCCATCAAGGCTGTCGGTCGTTTCAATCAAGTCGCTAATTCGCTTG
GCGGGAAAGGAAAGAAAGGCGGTGACTCCCTAGCTAAAACCATGCTTGCC
GCCCTCAATGCCGCCAATAAAGAAAATTCCATTGACAAGGGAAGATGAAA
CTAAAGTTGAAGAAATAATCAGCCAATCAGCAGACGTGGATTCAAAATCT
AACCAATCAGAGAGTGCTCCCGAAACCGTAATCGAATCAAATGGCTTCCA
CAAGGACAAACCTGCCCAATCAGAGATTGTTACTAATGGCAACACAGAGT
CCACTTTTGGAGACGATGATGAAATGTCTGATATGTTAAAGAAGCGAGCG
GAAAGGAGGCAAAACGTTTTGAAGATGAAGAAGAGGATTACGACGTCTTT
GCAAACGTTTCCAATAGCGTAACGGAAGAAGTAACCCAAGCTACGGTAGA
GTCTCCTAAAGTTACAGAAACCTCAGTCGAGGAATGTGAAAAAAATACTA
CCATAGAACCCTCTGAAGATACACAAGAATCCGTTGAAGACATGCCAGAA
TCTTTGCAAGCTGCTGAAGAGGACGTTGCGACGACGCCACCTGATACCGT
GGAACCTATTAATGTCACGCTCGAATCTGAGAACGTTTTTACGACCGAGG
AGGACGTCACAGAAACCAAATACGACGTCAACAACAATGAGATTTCTGAC
GAACCAGCGGGTGTTATCGTTGAAAATATCATTGAAAATGATGATAAAAT
GTTGAACAATGAACAAAAATCTGTTGAAGATCTTGTTGAGAAAGACATTT
CTGTTGAATCTGTTAAAAATGTTTCTGTTGACGAAAAAGTAGAACATTCT
GTTGTAGATGATTATGTTGAAAAAGTATTCACCAAATCTGAAATCAACGA
CAAGGTAGAAGTATCACCGTCTCCAGAAATCATTGATAACAAGGAAGAAG
CTTTAAAGATAGATTCCTTTAAGAACTCTGATGACGTTAAGTTTGCATCA
GAGAATGTTGAAGATTGAAATAGTTGAAAAACTTTCTACTGAAAATAAAA
AATCTGAGGAGAAGCCTGAGTTTGAAAAGCGGGCTGAAAAAGAGCCTAAG
ACAAAATCAGAGGTGATTAAAAAAGTCAAGGAATCTTCCTCGGTCAAAAC
TGAGGAAAAGGAATCTACACTACCTAGCAGAAGGGAACGCCGCAGGGAAT
CTTCAACCACAACATCAAGCGAGAAGAAGGAATCCGTTATTTCTCCGCGA
AGAGAAAAAGCAAAATCTCCAGAACCCCAGGAGGTCAAGGAATCGTCAAA
ATCTTCTAAATCCAAGAAAACAAAAGAAGCAAAAGTAGAGGATTCACCAA
AACCTACGAACATCAGGGAATCATCGGAGCCTCTCAAATCTGAAAAGAGA
GAGTCCAGAAGATCTCGAGAAAAATCCCCTGAAATCGAGAAACCCAAACC
TAAGGTGTCTTCGCCAGAGCCAGCAAAGAAGGTTGAGAAGACACCACCAA
AGACAAGCTCCAAACCACCAAAAGATTCACCTAAGAAGTCGAAAGAACCA
GAAGCCGAAAAGAGCAAAGATGGGAAAGTCACCAGTCCTAAGAGCAGTCG
CAAAATTGGTAGTAAAATAAGTGGACTACTAAACAAAGTGAGTTCACCAA
AATCGCAACGAAAGACTATCACTTCACCCGCTGCCAAAGACAAGAAACAT
CTTTCACCAAAATCATCAAGGAAGCTAGCATCGAAATTTGAAGCACAACC
GACAGACCCTGACACAAAACAAATCAAGTCACCACCACCTACTTCAAAGA
AGCCCATAAAATCTCCACCACCTGCAGTCAAAGATAAACCCAAAAAGAAC
GCACTAAAAACACCAGAAAAATTAACCTCTACAAGCTCAGAAGTATCTGC
TACGCCTGAAAGATCTTCGAAAGCTGCACCGCCGCCCACTTCACCCAAAA
GATCAACACCGCCAGCAGTCCAAGATAAACCTAAATCCTCTAAACCAGAG
GAAACACCTTCCGCCAAAAAGCAACCACCCTCGGCTTCAACCAAACCAAA
GAAAACACCAGAGCCTACAGAACCGAAAGATGTCACCGACAGCTCAAGAC
CGAAACCTCAATCGAGTATAACAAAACCTGAAGAAGACACCTCCTCGCCA
AAAAGCCCAGATCGACAAGACCGATTACGTAATCGAGTTGGAAGCCTAGG
AAACAACGCCAAAACAAATATGCCTGTATCTGGCAAAGATAAAAAAGGAC
TTTTTATGGCTTGGGAAACCCGTATGTCAACACCTGAACAATCGAGGCGA
ACCTATTCGACTGCGTCTCCTTTAACCAATCGAAATCTGATCGCTGCACG
AAAAGTCTCGCTTAATAAACAAGCGAGTCAAGAGCGATCTTTCGATAGCG
ACGGCTCGTCTATTGAAGACCGAACATCCTCGCCTGTCGGTCGTTTTTCG
AGAAATTCGTCGGTCCGTGCCTCGTTGAACGAAAGTAACTTGTCGACGAC
TCGTAAGAGACTAGTTACGAAGCCCCATAGTATAGCGAACAATGGAAGTG
TCAAAAATAAAATGGCGATATTTGCCAAATTCCAAAAGCAATGATTTAAT
GACACCATTGAGTTTAAATTTTTGGTAACATAAAATTAAAATTTGTACAT
ACTTTGGAGCATTTTATTTCATAGGTCGAGAATTTTAATCAAACTGTTTA
TCCTCCAGTGCTTGGAGTCTCTGGGAAATAAGTTTTTAAAATTTAGGCGT
TAAATCTTGACATATGAAATATAGTGTTCTCACTTCATCATATCTCGTAT
TAAATTTTGTATATACAATTATTTTTTTTGCAATTAAGAAAAATAACTGC
TTCTGAAATTTTGCTGCTTTAAGCTTCGAAATGACCTTGTTTTGTCAAGA
AAGC

Coding sequence (CDS) from alignment at sc0000076_pilon:961428..970431-

>MSTRG.10800.4.p4 ID=MSTRG.10800.4.p4|Name=MSTRG.10800.4.p4|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=477bp|location=Sequence derived from alignment at sc0000076_pilon:961428..970431- (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCAGAATCTTTGCAAGCTGCTGAAGAGGACGTTGCGACGACGCCACC
TGATACCGTGGAACCTATTAATGTCACGCTCGAATCTGAGAACGTTTTTA
CGACCGAGGAGGACGTCACAGAAACCAAATACGACGTCAACAACAATGAG
ATTTCTGACGAACCAGCGGGTGTTATCGTTGAAAATATCATTGAAAATGA
TGATAAAATGTTGAACAATGAACAAAAATCTGTTGAAGATCTTGTTGAGA
AAGACATTTCTGTTGAATCTGTTAAAAATGTTTCTGTTGACGAAAAAGTA
GAACATTCTGTTGTAGATGATTATGTTGAAAAAGTATTCACCAAATCTGA
AATCAACGACAAGGTAGAAGTATCACCGTCTCCAGAAATCATTGATAACA
AGGAAGAAGCTTTAAAGATAGATTCCTTTAAGAACTCTGATGACGTTAAG
TTTGCATCAGAGAATGTTGAAGATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10800MSTRG.10800Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10800.4.p4.exon8MSTRG.10800.4.p4.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10800.4.p4.exon7MSTRG.10800.4.p4.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10800.4.p4.exon6MSTRG.10800.4.p4.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10800.4.p4.exon5MSTRG.10800.4.p4.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10800.4.p4.exon4MSTRG.10800.4.p4.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10800.4.p4.exon3MSTRG.10800.4.p4.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10800.4.p4.exon2MSTRG.10800.4.p4.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10800.4.p4.exon1MSTRG.10800.4.p4.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10800.4.p4MSTRG.10800.4.p4-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076_pilongenomesc0000076_pilon:961428..970431 -