MSTRG.10774.3.p1 (mRNA) -

Overview


Name	MSTRG.10774.3.p1
Unique Name	MSTRG.10774.3.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000076_pilon:413636..420424+
coding sequence from alignment at sc0000076_pilon:413636..420424+

mRNA from alignment at sc0000076_pilon:413636..420424+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.10774.3.p1 ID=MSTRG.10774.3.p1|Name=MSTRG.10774.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6789bp|location=Sequence derived from alignment at sc0000076_pilon:413636..420424+ (Clytia hemisphaerica_ch_hm2_pilon)
cCATATttggaaattcgaacgtttccGAATCGAACGTCTCTGGAAATGAT
CGTTGTTAAACATTTTCGAAATGGTTAGTTCATTGAAAGTCTTCTACTAC
GTAACTTCATTGAAGATTTTTCTacgataaaactccaataaatTTCATCA
TGGTAAGCATTTGGACttctttattttaaaaacattgggAGAAGATTTGT
TATAGTGATACTGTTGGGTTCTACCTTTTATTTCCTAACTTTTACAAAAG
GTAAAGCGAATATCAAAGGTTGGTTCTTAAGGGGATTAAGcaaatcttga
tttttgttttgctgaAGATTTTCTGTGGATATCCCGTACAAGGATTCAGC
AAGTTCGAGGCTTTGACTTCATTCTTTTCATTCTTTAGAGAGAGTGTATT
TCTATCCACGTCGGACAAGCCGGTGTCCAAATCGGAAACGCTTGTTGGGA
ATTGTACTGTTTGGAACATGGAATCCAACCTGACGGTCAGATGCCATCAG
ACAAAACCATTGGAGGTGGTGATGATTCATTCAACACTTTCTTCAGTGAA
ACTGGTGCTGGTAAACACGTCCCAAGAGCTGTCTTCGTTGATTTGGAACC
AACCGTTGTTGGTAAGAAAAATCTTTTCGGCAATCTACTTATCAGTCTAG
TCGAATtccaaaaactgagaaaaatttTGGTTCCGAAAATGGAACTCTTT
CatctctttttttaaatctttgaaaCCATGAAAttaaatgttctcaactt
ttctaTGTTTGATCGACGACACGCGATCTAAAATTTGTAAAGTTATTTCT
CACAAAGctacagattttcaaaaaaccgtaccgtttcacttttttttcat
ggttcaaaagaagaaagattgaattttaaggcatttttccaaaattctat
TGAAATGGCCTAATAAGTTAAGTTGAAGCAAGACGAGgcaaaattcagtg
gggataagaaaaatagcataatattttgcagcgaggatagctttatttga
ttattttcagttgggACAAAGTTGGAGTATAACTTTCCGCCGGGGAAgat
atttttgtcgatttttccAATGGGTCTgagaattataaaaaaagtttcat
ttttggaacttaAAGAAAAGTTCCTTTTTCTTGGAAGTTCGACAAGACTG
TCCATCCTATTTATCTTCCTAGATAGTGGTTGACCGACACCAGAAGGTTT
CTTAGAAATGGTTCTATAGAGataatgaaaatagaaattatTCTCATTGT
TTCTAGATTCCCATTATGCTTTACAGGCTTACGCACCTTTTGTTGCTAAG
TTCGTTTCAATTTTGAAAGCCttttttttCttagccagacggtgtcaatc
gaacaaatcgaacgccgaatcaattgaacgcaatcgaatattacccagga
tttgccgttcgattgcttcgattacgttcgataatcgaattgcaattatt
cgatcgcgttcgattacgttcgattggttcgattgcaatttttgttcgaa
gttgttcgattgacaccgtctggtcttGGTGAATTGCACCAGATTTGTAC
CGTGTCCCGTCCGTCACACTTTTTCTTACATAGCCAAGTACAAGAGTGAT
ACAGTTAGATACAAACTTTAAACATTCATTTCTGGTCAAATATCACTTTA
AAAATCCTGGTTGAAGGAGCATCTTTTCcgttttttcggaaaaaaatgaa
aaaccgtGTAATTTCAAGGCAAAATAATTTCTAACGGGTACACCTTTAGA
TGACACtggttttctttttagaaaGTATAGACTTCAATATGGTTTTGGGA
AGTTTTATGCGTGACAAGGtttttttACatcaatttttgcaaaaatcttg
TTTTGTATACAAAATTTGTCCCGTCCGTCACACAAGTACTTAATGGGTCT
TTTGGGAGTGTTTAATGCAACTGTAAagttatttttacataattcaaGGT
CTTACACTGAACCTGtttttttGTGGTTGCGAATGTTGATGcttaagaaa
ttttttgtttgagcTTCTATGTTTGGCTGGTTCATTTAATTCGGATCTCT
TTTTGTTCTTTAGACGAAGTCCGTACCGGTACCTACCGTCAACTTTTCCA
CCCCGAACAATTGATTACTGGCAAAGAAGATGCTGCCAATAACTACGCCC
GCGGACATTACACCGTCGGTAAAGAAATCATCGATTTGGTCCTCGACAGA
ATCCGAAAACTCGCTGATCAATGTACTGGTCTTCAAGGTTTCTTGATCTT
CCACTCCTTTGGTGGTGGTACCGGATCTGGATTCTCCTCCTTATTGATGG
AACGTCTCTCCGTCGATTTCGGTAAAAAATCCAAGTTGGAATTTGCCATC
TACCCAGCTCCTCAAATCTCAACTGCTGTTGTTGAGCCATATAACTCTAT
CTTGACCACCCACACCACCTTGGAGCACTCTGACTGTGCTTTCATGGTTG
ACAATGAAGCCATTTATGATATCTGCCGTCGCAACTTGGACATCGAACGT
CCAACTTACACCAACTTGAACAGATTGATTGGACAAATCGTCTCATCCAT
CACTGCTTCTCTTCGATTTGATGGTGCTTTGAACGTCGATTTGACTGAGT
TCCAAACTAACTTGGTCCCATACCCACGTATTCATTTCCCACTTGCTACC
TACGCACCAATCATCTCTGCTGAGAAAGCTTACCACGAACAACTCACCGT
TGCTGAAATCACCAACGCTTGTTTCGAACCATCCAACCAAATGGTCAAAT
GTGATCCTCGTCATGGAAAATACATGGCCTGTTGTATGTTGTACCGTGGT
GATGTTGTCCCAAAGGATGTCAATGCTGCCATTGCCACCATCAAAACCAA
ACGAACCATCCAATTTGTCGACTGGTGTCCAACTGGATTCAAAGTCGGAA
TCAACTATCAACCACCAACTGTCGTTCCAGGAGGTGATCTTGCCAAAGTC
CAACGTGCCGTCTGCATGTTGTCCAACACCACTGCCATCGCTGAGGCTTG
GGCCCGTTTGGATCACAAATTCGATTTGATGTACGCTAAACGTGCTTTCG
TCCACTGGTATGTCGGAGAAGGTAAGAtagaaatgttattttctccTGTC
TATTGTAACCGTTGTTAGTTTTAGAGATTTCAACAAAGGTTTTAGATCAA
ATTTATTCATTTCTGTATCACTAGAAATCCTGACATCAACTTGTGTGTAT
TTTCTCCATTCAAATCTTAACATACTACCGTGGTCTATACCTATCAACTT
TCTAATCactttttaaaacttactttcaCTTCAGGTATGGAAGAAGGAGA
ATTCTCTGAAGCTCGTGAGGATTTGGCTGCTTTGGAGAAAGATTACGAAG
AAGTCGGTGTCGATTCCGTTGAAGCCGAAGGGGAAGAAGAAGGAGATGAA
TATTAAATCATCATCCCTCCCTTCACCAAAAACTTGTAAATAGTGTAAAT
AGTCTTGTTCCGAATAAATTTATTGATGATAGGAAAATTATAACTAAtct
ttctgttttattttttttattacaaaaatttcGGATACCTGTCACGTCAA
ACAAAATACCTTTTGAAGATTGGACTAACTTTTCATATGTGTAGAGGCGG
GGGGTCAGTACAAAAATTTAGTAGtaaaaaaagacagaaaaagcggactg
ggttcgagttccCATATTCTTGATATGTCCACTAAAAAGtttttcgagtt
agctttttttcataactcggatttctttgtagatttttttcttttatgta
GAAAATCTAAATGTCTTTAGATAAATTTGCATTTACTttaaagggaacga
cgcatggtatatttatgaaatgctgatctagcattggcacaaacacccat
acggaggagtatttaggagtgctggatcataacaaaaaccaaaagtgact
ttattccaaaaaatatattcaaaaaagtgaatataatttactataatgtt
caacaacaacacaaaaagacttacataaaactgaaagaaaaaaagaatgt
ctttttcttttgaatgaaatcgagtgtttctatttttaaatgaagacatt
ctattgtgaatttattcgaaaacttctttgcaatctttttgtttacattt
tgtcttcattcactttcgtttactgttgaaaacataacaaagttttagct
atactctCAAACCACGTATAACTgtcggttaagccaatcagctttcgggc
tgacatcagcatgtatttcagagtataccatggaaTTACCAGCAACtccg
acccctactataagtatagcgctattCCCTTTAACGAAAAGGGCAAAATT
TCACGTGTAAAACAATTACCTTATCGGTAATCAATGAAAGAATAGCTCGT
TGtctatccagtgtctataataaattcttgatGAAACCATGAAATTAAAT
GTTTCATTATCGGAACTTTTCTATGTTTGATCCACGCGCAATTTAAAATT
TGTAAAGGTATTTCTCATTAAGccacatattttcaaaaaaccgtaccttt
tcaatttttttttggtttaaaagaagaaagatgGAATTTTAAGGCATTTT
CCCGAAATTCTATTGAAATGGCTTAAAGTTGAAGCAAGACGAGGCAAAAT
AGTATGACCACggatttgaattcttttgtttgcaagtcagaaaattcagt
ggggataagaAAAGTAGCAtagtattttgcagtgaggatagacttatctg
attattttcagtggggacaaagtTGGAGTATAACTTTCCACcgaggacga
tattttggccaatttttccagtatgggagggttcccagtgggtctgtgag
aattgggtgttataaaaaaagtttcatttttgaaacttaaccctttaagt
gccacagTCACTTTTTTAGTGCCACAGTCACTTTTTTATATCTTGGATCA
CTGGGAtcaactcaaactgggcattacaggagggcttcgccctcctacat
agcccatgtctaaTATATAcgatattagcgagtttatgtatgtgtgtttt
tcagcgacggagacggtaaggttctaatttgagtacatcctgaccagctg
aggacaacggtaaatcagcacttttaccgtcctcgattttgcggggcgga
attgcgggtttttccaaatcgcttcagtcactctaccgtcctcaaaagtg
caaatgcataaactcggtattggtACTTAAAGGGTCAAAGAAAAGTTCTG
TTTTCGAAGTTCGACTAGACTGTCCATCCTATTTATCTTCCTAGCTGGTG
GTAAtagagaaaatgataaaaagaaagttatTCTCATTAGTTTCCAGATT
TTATTGTTTGGGTTTCTACGTTTAGCCGGTTCACTCTTGAACTAGGCCCT
GCGAAAAATTGAATTCGGATCTCTTCTTGTTCTTTAGACGAAGTCCGTAC
AGGTACCTACCGTCAACTTTTCCATCCTGAACAATTGATTACCGGCAAAG
AAGATGCTGCCAACAACTACGCCCGTGGACATTACACCGTCGGTAAAGAA
ATCATCGATTTGGTCCTCGACAGAATCCGAAAACTCGCTGATCAATGTAC
TGGTCTTCAAGGTTTCTTGATCTTCCACTCCTTCGGTGGTGGTACCGGAT
CTGGATTCTCTTCCTTGTTGATGGAACGTCTCTCCGTCGATTTCGGCAAA
AAATCCAAGTTGGAATTTGCCATCTACCCAGCTCCTCAAATCTCAACTGC
TGTTGTTGAGCCATATAACTCTATCTTGACTACCCACACCACTTTGGAGC
ACTCTGACTGTGCTTTCATGGTTGACAATGAAGCCATTTACGACATCTGC
CGTCGCAACTTGGACATCGAACGTTCAACTTACCAACTTGAACAGATTGA
TTGGACAAATCGTCTCATCCATTACTGCTTCTCTTCGATTTGATGGTGCT
TTGAACGTTGATTTGACTGAGTTCCAAACCAACTTGGTCCCATACCCACG
TATTCATTTCCCACTTGCTACCTACGCACCAATCATCTCTGCTGAGAAAG
CTTACCACGAACAACTCACCGTTGCTGAAATCACCAACGCTTGTTTCGAA
CCATCCAACCAAATGGTCAAATGTGATCCTCGTCATGGAAAATACATGGC
CTGTTGTATGTTGTACCGTGGTGATGTTGTCCCAAAGGATGTCAATGCTG
CCATTGCCACCATCAAAACCAAACGAACCATCCAATTTGTCGACTGGTGT
CCAACTGGATTCAAAGTCGGAATCAACTATCAACCACCAACTGTCGTTCC
AGGAGGTGATCTTGCCAAAGTCCAACGTGCCGTCTGCATGTTGTCCAACA
CCACTGCCATCGCTGAGGCTTGGGCCCGTTTGGATCACAAATTCGATTTG
ATGTACGCTAAACGTGCTTTCGTCCACTGGTATGTCGGAGAAGGTAAGat
gaaatgttattttctcctgttgttagtttgtttgtttgttagttttacag
atttcaacaaagtttttagttcaaatttattcatttCTGTATCGCTAGAA
ATCCTGACAGTAATTTGTGTATTTTTCTCCATTCAAATCTTAACATACCA
CCGTGGTCTATACCTATCAACTTTCTaatcactttcaaaaacttaCTTTC
ACTTCAGGTATGGAAGAAGGAGAATTCTCTGAAGCTCGTGAGGATTTGGC
TGCTTTGGAGAAAGATTACGAAGAAGTCGGTGTCGATTCCGTTGACGCCG
AAGGGGAAGAAGAAGGAGATGAATATTAAATCATCATCCCTCCCTTCACC
AAAAACTTGTAAATAGTGTAAATAGTCTTGTTCCGAATA

Coding sequence (CDS) from alignment at sc0000076_pilon:413636..420424+

>MSTRG.10774.3.p1 ID=MSTRG.10774.3.p1|Name=MSTRG.10774.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0000076_pilon:413636..420424+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGCCATTTACGACATCTGCCGTCGCAACTTGGACATCGAACGTTCA
ACTTACCAACTTGAACAGATTGATTGGACAAATCGTCTCATCCATTACTG
CTTCTCTTCGATTTGATGGTGCTTTGAACGTTGATTTGACTGAGTTCCAA
ACCAACTTGGTCCCATACCCACGTATTCATTTCCCACTTGCTACCTACGC
ACCAATCATCTCTGCTGAGAAAGCTTACCACGAACAACTCACCGTTGCTG
AAATCACCAACGCTTGTTTCGAACCATCCAACCAAATGGTCAAATGTGAT
CCTCGTCATGGAAAATACATGGCCTGTTGTATGTTGTACCGTGGTGATGT
TGTCCCAAAGGATGTCAATGCTGCCATTGCCACCATCAAAACCAAACGAA
CCATCCAATTTGTCGACTGGTGTCCAACTGGATTCAAAGTCGGAATCAAC
TATCAACCACCAACTGTCGTTCCAGGAGGTGATCTTGCCAAAGTCCAACG
TGCCGTCTGCATGTTGTCCAACACCACTGCCATCGCTGAGGCTTGGGCCC
GTTTGGATCACAAATTCGATTTGATGTACGCTAAACGTGCTTTCGTCCAC
TGGTATGTCGGAGAAGGTATGGAAGAAGGAGAATTCTCTGAAGCTCGTGA
GGATTTGGCTGCTTTGGAGAAAGATTACGAAGAAGTCGGTGTCGATTCCG
TTGACGCCGAAGGGGAAGAAGAAGGAGATGAATATTAAATGAAGCCATTT
ACGACATCTGCCGTCGCAACTTGGACATCGAACGTTCAACTTACCAACTT
GAACAGATTGATTGGACAAATCGTCTCATCCATTACTGCTTCTCTTCGAT
TTGATGGTGCTTTGAACGTTGATTTGACTGAGTTCCAAACCAACTTGGTC
CCATACCCACGTATTCATTTCCCACTTGCTACCTACGCACCAATCATCTC
TGCTGAGAAAGCTTACCACGAACAACTCACCGTTGCTGAAATCACCAACG
CTTGTTTCGAACCATCCAACCAAATGGTCAAATGTGATCCTCGTCATGGA
AAATACATGGCCTGTTGTATGTTGTACCGTGGTGATGTTGTCCCAAAGGA
TGTCAATGCTGCCATTGCCACCATCAAAACCAAACGAACCATCCAATTTG
TCGACTGGTGTCCAACTGGATTCAAAGTCGGAATCAACTATCAACCACCA
ACTGTCGTTCCAGGAGGTGATCTTGCCAAAGTCCAACGTGCCGTCTGCAT
GTTGTCCAACACCACTGCCATCGCTGAGGCTTGGGCCCGTTTGGATCACA
AATTCGATTTGATGTACGCTAAACGTGCTTTCGTCCACTGGTATGTCGGA
GAAGGTATGGAAGAAGGAGAATTCTCTGAAGCTCGTGAGGATTTGGCTGC
TTTGGAGAAAGATTACGAAGAAGTCGGTGTCGATTCCGTTGACGCCGAAG
GGGAAGAAGAAGGAGATGAATATTAA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.10774	MSTRG.10774	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.10774.3.p1	MSTRG.10774.3.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.10774.3.p1.exon1	MSTRG.10774.3.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.10774.3.p1.exon2	MSTRG.10774.3.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.10774.3.p1.exon3	MSTRG.10774.3.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.10774.3.p1.exon4	MSTRG.10774.3.p1.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.10774.3.p1.exon5	MSTRG.10774.3.p1.exon5	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000076_pilon	genome	sc0000076_pilon:413636..420424 +

You are here

MSTRG.10774.3.p1 (mRNA) -