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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000073_pilon:1107332..1113134- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.10542.3.p1 ID=MSTRG.10542.3.p1|Name=MSTRG.10542.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5803bp|location=Sequence derived from alignment at sc0000073_pilon:1107332..1113134- (Clytia hemisphaerica_ch_hm2_pilon)
ATTGGAAGCTTAGCGGGAGAAAGAGAAAGAGGAAAAGTGGACGAAAGTTA
AAAGTGAAGTCTTTGCGAGGTTGATGAAAACTCAGACCGGTGATCAAGAA
GCATTAAGGGTGATTTCCTCTACCAGTATTTTATAATCACTGATGCAATT
TATTAACAAAAATTCTCTCAAACAAGGAAGATAGAAGATAGACGGCTTGT
GAGGTGTTGTTTATTTTAATCAACTTAGTTTGTGCTTGAAGGTTGATTTT
GTTACATTTGGCATAATGAAGAAATATACATCCATGAAAACAGGTAGGTG
TCTTTATTCTTCGTCTATCCAATAGATTTAGATCTCAGAGTTAAATATTT
AGGGTAAGATTTTTCACAATGCTTTCATCTAAAAAGAGGTGCAGCGTCTC
GAAAATTCTATTCATATAAAGCTATTCATGCATCACGCAAAATTACCCAT
AAACAAAGCTTTTGGATTTTGTTCTATGGATTTACAGGCTATGTTAATAT
GCAAACAGATCCTGATTATTCCGCGCATGTCATCTTGGTCATGGCTCTGT
AAAGGAACACAGGTTAGCGGATCGATTTGTTGATTTTCATCCAGATTTGG
ATTTAGTGAAAGTGTTGGTTGGCTGAAGCAACGCAATCAGACCAAAATCA
TACGCCAATCACAAACATAAATACTGTATTAGAGCAAAGCAAATTTTTTA
TGTATTGGCTGGACAACCAAGTCAGATCATCACATTCAACATATCCTTTT
AGAACAGTGCGTGGTGTGTGCTGAATGGATGATCTACCATAAGATTAGGG
CCATATATTACAGACCTTTTCAGACCAAAGAAGGTTAATAAAAAATGTAA
TTCACACCATGAAGTCCTCTAATTTCAAAATTTGAAAATAAATTAATTTG
AGTTTGATGCGAATAGAGTAATGACCAAATTATTCCATCTTAGGTTTTTC
CGTGGGTTTTCCATAAAAATTTCTACTTTAATTAAGTTCTCATGTACATC
TAATATCTAAATACTCTCATCAAGCCTTCTCTAAGAATTTGACCGATTTT
CTCGCCTTTTCTTTTAAATTAAATGCTTAGCACAAATCCTTAAGATTTCA
AAATCACAATTTGATAGAAGTTAAATACACCCCTTCTCACAGACCCACTG
TGACCCCTTCCCACTGGGAAAATTAGCCAAAATATCGTCCCCAGGGGAAA
ATTATACACAAATCTTCACTGCAAAATAGTGTGCTATTTTTTCCGTCCCC
ACCGACTTTTCTGGCTCGAAAACAATAGATTTCAAAATCCCCGGCCATAA
AACCCCATCGAGTTTTGGTCCGTTATTTGTACACCCACTGACTGAAAATC
CTACCACTCCAGGGGAATAAGGCGGGTCATTGGAGATCAAAATTCTTGCA
ACGTTACAAATCATTTTCAGAAGCTCATTTTGGGCTTAAACGAAGCGTAT
ATCTAAGTAGAATAAGATTCAGTCTAGGCAGATGTTTTTTTTATTTTGAT
ATTTTGCGTAATTCGCAAAAATTCTCAATTTTGCGCTATTTTGATGACGT
CATAAAAATTGAAATTCCAATAACTTTTGAAATCTTTTGAAAATTTGCAT
TGAAATGCATCTTTGTTGAAAATTTGAAATTATTTTGATGATTCTATCAA
AAGTTATTGGAATTTCAATTTTTATGACGTCGACGAAATAAATAGCCTTA
ATCCCCTGGAGCAGGTCTGTGAAAAAGAGGTGTTTAAATTCTCGAGGAAG
ATATAAAAAATCCCATTTTCGATTTCTGCTCTATCCACGCAACGATTAGA
GGTAACTTTTCAAATTTGGAAAGTATTCACATGTTTTAGAATTACTGTGA
AAATAGTAATAGGACAGTTCTTCAAGATACTGACTAATATTTTTTTATGA
TAATAACACCTCTGCTAATATGGAACTTCTTCCCACAGTGAGAATGAAAA
TTTCTATCGAAATCCCAATGTTCCCAGAACAAAAAATCCCTGTGGAGCTG
ATTTTCAAATGCGGATAAAAGCAAAGTGAATTTTTCCCTTTTTTCCCTAT
AATATAAAACGAGCTGTCAAACTCAAATTTTATCAAAAGTTAAAGCCATG
CTTGTTTTCGCTGCAGTGTATTTTGAGGCAGACAAAATGGTTTGAATTTT
ACTCATAAAGTGCAAACTTTATGGACCAACTCAGCTTATCCACTAAAAGA
GTAAAAGAGTAAGACTACAATATAATAAATGATACCTTCAGTCTTGAGAA
TCACATTCATTACTGTTTTTTTTGTACAAAATCCGGCGATGCTTCAAATA
AAAAAGCCCGTTTTCTCGTTTTTTGTCATTAATGACGTCGTAATTTGCCC
TTTTGTTTCCAACATTTTCAGATAAAAGCTGTGATGTTTTTTACAAAGAG
TATTATACTTGGTAAGGGCTGACGTCAGCAAAATTTTAGTTTTAAGGCTT
GCATTCCTCAATTTTTCTTCCTTGACACATCAGGACAGGAATTTCAGGAC
TAATTTCACAAAATGCAATCTTCGCAAACAATCTTCACAAACAATCTTTA
GTGTTTTTAATTTTTACAATCATAGTTGTTCAACAACAGCGCACTAATTT
ATGTTTGTTTAATCCCCGTCAAAATTTTACTCTAAGAACCACGGTTTTGG
AGATAGCCACATGATATGAGATCCACCCACGATTATTTTGCAAATCAGAA
TTTGGCCTTTCATTAAGATACTAAAATGTGTAATTAAAAACCCTCGCATC
TCATCATCAACGTCTATGAATGGCTCAAGGAAATTGTCGCAATACCAATG
CCAATATTCTACATTCTATGTGCCTACTAATTCAATGATTAAGAAGTAAA
CAACAAGCTCGTCATCGATGACAACTCATTTAAAAACGATTAACTGTGAA
ATCAATACTCAAACCCCAAACATACACCACTCTGACCGATACGTGCTCAT
GTAAAACCAATGGGCTGCCGTAATTTCCCTGCAACATATGGGCTGTCAGA
AATATCAAACTTCTATACTGCAGAAAATTAAATTGAATTTAGATTGTGAT
AAAATCGATATTTTTGTGCGCTAGGTCACAATTTCATATTTTAAAATCTC
TGAAAAATCTAGAGAGGTGCTTAAGAATTTTTTCAATATTTTGTATTGTG
TTGTTTCAAAATGATTTCAAAGTTATATTTTGCCTTTAATCGCTCTCATC
GAAAATTCAAGCTGAAATTGTTTTTAAACCTGGTCTAGTTTCGTAAAAAC
TTTATTGGCTGAAGTAGTTTTATTTTTTCTAAAAGTTTGCGGTACCATGA
TTTTCGACAGGATAACGACGCCTGGGTTTTTTATTAAATTAAGTAAAATT
TAATAGATGATAAAAGATTGTTCACGGAAATTATACCATTGTTGTTAAAG
AAACATATCAATTAAAGACCGGTTAAAATACCATACACAATTTTTTCGTT
ATGGAAGGAGAAAAAAAAGTTTTAATTTACCGCGTACTTAAAAAAACATC
AAGAAGTGCATTAACGGGACAACATTTGAGCGGAATCTCATTAAAACGAA
AACTACATTGCGCAACATCCTTACACTCCTACCATTCACAAATTCCATTC
TCATGATTCAATATGTCTCAAAAGAATCGCCTTCCTTCACCAGAATCAAT
GTGATATTCATAAATCAATAAACTTGAACGCTTGAAGGACAGCTTGGGTT
GAGTGATTGGGAATGATTGACCAACAAAAATAGGGCAATACGCACATGAA
TTATTATCTAAAACCCAAAAACCTATACTAACAAAAATTAAAGGGGTGGG
CAGTAAATGAGGAGTAAGTTGGTGACTGGAAAGAAATTAGCAAATGAATG
GACGGCAAAGTAAATGAATGGTAAATTAGAGAGCGGATGCCATGCGCGTG
CCAACATAATTTGATACAATTCTTTCTTCAACAAAACTCTAAATTTGTAG
TTGACAATATCTAAGGAAGAGTACTTTGGATGATGAATCAACTATTCTTT
AAAAAAAAAGGAAAAAAGATGGTCAATTATTAGATTTCCCTTTTCAATCA
AATGCAATACTTTACTTAGAATTGAAATATTTGATGCCCTTCCACGTGAC
AAGTGAACAGGATATCAAATCCTTCCTACATTCATTGGCTGTATACTACC
AGGTATGCCAATCTTAACTTCACAAAGGGGCTGGGTTCGATTTTAACAAT
GTCAAATGTCAGTATTGTACTGTTGTGTCACGTCAAAACAATGACTTGTA
CCATTCGACGCTCTTTCCGCTCTACAAAACTAAACGTACAATCCTTTCTT
TATAAAACTTTTTGAACAAAGATGTTGGGTGTATATTAAGTAATTTCTCC
GAACTATTATGTTGTATATTTTGAGTTCTCAAAGATATTGTTCAATATAA
CAGTCATTATTAATCCTTTGGTCCAATATATTTCCCGATTTTTTCAAAGA
TGATTTAAGGACCGTTAATTTCCGAGGCAAATTATTTAACGTTCATCACA
AGATCCCTTGTCATGAAATTAATCATCCGAAAAAGCCATTTTGACATCCG
CTAATGGGTAATATCCAATCAAGTGTGGTTGTAACAGAATAAGTTACATT
CAAACATTTTATTGATGTTCAAAGTTTGAGGTTTGCTAAATAACCTCACT
TCTGTCAAGGCGCATTGATTTATGATCGCAAAAATTCATCTTTGAAGTGG
TCGTCCTATGGGACAGTCAAATGATAAATTTAGATTGTGAAGATATATTT
AGTAGAAGGCGTTTGAGCAGTCGTCGCTATCTTAATTCCGATAGATCATA
GTCGAAGAGGCACTTTTATATCGGCTTGCCTTTCAGAACAATCAGAGGAA
TTTGTATTGTTTGGTTGTTTGATTGACATCTTGTGAAAGCATTAAATGTG
ATTTCAGAAAGGTTTGTTCGTCATTACTGAATGAACGATTTGATGAACAA
ACACTCACCACACATAACAAATTGAATTTGATTATCCAAAAATCATGAAA
GGTTCGTTTAGAAAATGATTTTGATGATTTCAACTTTACTTTGATAGATG
GCTTCGTTGAATTCTTGCATACTGGAGACCTTTTAAATTCAATGCAATAG
GCTCGGACGCATTTCATAAGCATTTAGTTTTTGGATAAGCGAGTCCAGCC
CAAATATTAAAATCTAAATGAATGATGTCATCAGAAATAAACTAATGAAT
TGATCAATTTTATGTTTTGGCTGTATGGAATGCTTAGTGGGTATACAGAA
CCTACTAGTCACTCATGTCAAAATAGAAGAATAGGATTTTGGGGGATAAG
ACTTTAGGGGCTCATTCAGCTTTGATGTTTACGAATGTTTCTTTTTTCAT
TTAGATCTTCTGGTCATCGTTTTGGTATGTGCATTTCTGTTTGGGATTTC
AAGTTGTGAAAGCAAATATCTTTCCAATCGTCAACTGAAACCCAAGAAAA
TACAATCGGAAACAAGACCCAAATCGTTTATTACATTACGACAACGTAAT
TGTCATGATGTTTGTCGGTTTAAACATAGACTTTGCAATGATATTGCATC
GATGAAGAAGATCAGGGAAGAACAGATCATCTGCACAGCTTCGAAAACTA
CTTGCTTGCTCAAATGTTCAGCATTGAAATAATTGGACACAGACATTATT
CACCATAAAAAGGAAAACCAAACTCAGTATTTTAGTTTTTTTGTATAAAA
TTTTAAATTATAGTATTGACAGAATCAGCTCTTGTAAATAAAGACACTTT
ATTCGAATATTTAGAAGTAATACTTTTTAAAAGATGGACGACCTATATTT
TAG Coding sequence (CDS) from alignment at sc0000073_pilon:1107332..1113134- >MSTRG.10542.3.p1 ID=MSTRG.10542.3.p1|Name=MSTRG.10542.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=612bp|location=Sequence derived from alignment at sc0000073_pilon:1107332..1113134- (Clytia hemisphaerica_ch_hm2_pilon)
ATCTTCTGGTCATCGTTTTGGTATGTGCATTTCTGTTTGGGATTTCAAGT
TGTGAAAGCAAATATCTTTCCAATCGTCAACTGAAACCCAAGAAAATACA
ATCGGAAACAAGACCCAAATCGTTTATTACATTACGACAACGTAATTGTC
ATGATGTTTGTCGGTTTAAACATAGACTTTGCAATGATATTGCATCGATG
AAGAAGATCAGGGAAGAACAGATCATCTGCACAGCTTCGAAAACTACTTG
CTTGCTCAAATGTTCAGCATTGAAATAAATGAAGAAATATACATCCATGA
AAACAGATCTTCTGGTCATCGTTTTGGTATGTGCATTTCTGTTTGGGATT
TCAAGTTGTGAAAGCAAATATCTTTCCAATCGTCAACTGAAACCCAAGAA
AATACAATCGGAAACAAGACCCAAATCGTTTATTACATTACGACAACGTA
ATTGTCATGATGTTTGTCGGTTTAAACATAGACTTTGCAATGATATTGCA
TCGATGAAGAAGATCAGGGAAGAACAGATCATCTGCACAGCTTCGAAAAC
TACTTGCTTGCTCAAATGTTCAGCATTGAAATAAATGAAGAAATATACAT
CCATGAAAACAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073_pilon | genome | sc0000073_pilon:1107332..1113134 - |
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