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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071010 ID=TCONS_00071010|Name=TCONS_00071010|organism=Clytia hemisphaerica|type=transcript|length=6652bpRun BLAST on NCBI protein sequence of TCONS_00071010-protein >TCONS_00071010-protein ID=TCONS_00071010-protein|Name=TCONS_00071010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1131bp MQLNRSXVHAPKGHNKKSHAAEQIIAANIQTKNDEARQQAEKNVIETIKERun BLAST on NCBI transcript from alignment at scaffold_58:991510..1004089- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071010 ID=TCONS_00071010|Name=TCONS_00071010|organism=Clytia hemisphaerica|type=transcript|length=12580bp|location=Sequence derived from alignment at scaffold_58:991510..1004089- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:991510..1004089- >TCONS_00071010 ID=TCONS_00071010|Name=TCONS_00071010|organism=Clytia hemisphaerica|type=CDS|length=30564bp|location=Sequence derived from alignment at scaffold_58:991510..1004089- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071010 vs. Swiss-Prot (Human)
Match: DDX60 (Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60 PE=1 SV=3) HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0 Identity = 422/1193 (35.37%), Postives = 643/1193 (53.90%), Query Frame = 3
Query: 2295 APKGHNKKSHAAEQIIAANIQTKNDEARQ-QAEKNVIETIKEVDQLSKDANYHAGIELIQSKEKCFTTEESQKKIRLKMLDIYEL--QLKHDCQHDEKARQK---VTIEMFLLVRRLHTKYVSILNEEDRMKLSASLSGLGFTALAERLFNGQPSEEADENHIE---------------FQLKNIGHLLPRNVRTDPDPRIKGFFPDTWQRQLFDAIDLNQSALIVAPTSSGKTFASYYSMEKILRKNNDDIVVYVSPTKALVNQVQAYIYKKFDKPNMPNGKVVCGTFTRDYRNNVMNCQILVTVPQCLEILLLSADSFSWSKNITYVIFDEIHFIGSEEGAEVWEHLLCLITCPFLALSATVANPDDLHKWLQSAQNFQK------ENKTM--------------YYQERSDESYVVQKVVVSDRHSDLENHVFTPDESLEIKSSPEALHRMHPYVTLKSGLNKKREIPSHLTMSPQECLILYKTMLE---EWPDCQELIQLDPSFF--FQGEMFLTRDDVRRYEAALKTEFQNWIIR-NMVKAERVLEKLYLGISDHDVTQSDVYKHFVSLVKTIESRDMLPVIVFCLERALCEYLTKMVVEYFKVKEAIFF---ADKKEKKLTNFEKQAAKKERDKKTDEEQSVRKNRFED----------------EKNLWFDHEFCPQGGSFRGKGVADKEDLEFLYRRIVGKMSRTSFFMSFMEGIRYGISYHHSGMNNAMRSTVEILFRKKFINIVCATSTLAVGIHVPCRSVVIASHNQYLNTLVFRQMAGRSGRRGFDMVGNVIFHAVPNRKISKLVSGDLPYLLGNYPLSVTLCLRLLTVVEEVRENGKQTAKCRSDTIARALNLLKNPLILQHIPHLDVQFKHFFLFSTQFLVKERLLKLNGKPQGLAGLAAHLFYHEPCNYAFIACIQNETFHKFCNQGRRDVNGIFDEDFLRNLVLVLSHFFARK----QLHESHLKYRNKSIVQLQELPPKFAESIRLYNERVEEVYDMYLHATSSYIEEVFGEDHTLPLSLVQFPTMKDVSIPSNGNNIQDKLFSLASDNKCCSSFAALSGHTDQQRVYNYTDQTTNVRHQIYTDVHEIPIMNTEDV--------LNSYALDFFKHGDPDAIQEENHLKSGEDYDSLKDFMLTIKTISCSL-ELFAPRHDIVRIAFLQLSQEYQRRF 5636
PK +KK+H + I A K AR+ Q E+ + + N H+GI+ ++ K + + S K++++M+ + K C+ +E K + +++ + L KY +L E+DR ++ L LGF LA L P+++A EN ++ FQL+ +GH L R+ R DPDPR++ F PDTWQR+L D +D N+SA+IVAPTSSGKT+ASYY MEK+L++++D +VVYV+PTKALVNQV A + +F K N+P+G+V+CG FTR+YR++ +NCQ+L+TVP C EILLL+ +W K I YVIFDE+H +G E GAE+WEHLL +I CPFLALSAT++NP+ L +WLQS + + K EN T Y Q + +SY V+ V+ +R++DLE HV + IK HP L + ++ P LT+SP+E + LY M + WP QEL P F F ++ + + D R+YE +LK E +WI N+ +A VL+ L + D++ ++ F LV+ + + LP + F + E + V + K K+ ADK+ + N ++ K +K +E+S +K R D EKNL PQ ++ + D E L+ ++ R+ K R + + GI YHHS M+ + VEILFRK ++ +V AT TLA+G+++PC+SVV A ++ YL+ L +RQM+GR+GRRG D++G+V F +P KI KL+ ++P L G++PLS+TL LRL+ + + + D A+ L++LK+ L+ P + K +FLFS QFLVKE L G P G AGL +HL YHEP N F++ + N FH C Q R + F +D + LVLVL+H F R+ + ++H ++ +S V L +LP F++++ YN ++ E + +L S + +++ LPLS ++F T K+ + + L S S F LSG+ D + T + I + + P++ ++ LN+YALDF+KHG + ++N + G+ Y LKDF LTIK+IS SL EL D V +AF QLS + +
Sbjct: 567 GPK--SKKAHETKAEIIARENKKRLFAREEQKEEQKWNALSFSIEEQLKENLHSGIKSLEDFLK--SCKSSCVKLQVEMVGLTACLKAWKEHCRSEEGKTTKDLSIAVQVMKRIHSLMEKYSELLQEDDRQLIARCLKYLGFDELASSL---HPAQDA-ENDVKVKKRNKYSVGIGPARFQLQYMGHYLIRDERKDPDPRVQDFIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPTKALVNQVAATVQNRFTK-NLPSGEVLCGVFTREYRHDALNCQVLITVPACFEILLLAPHRQNWVKKIRYVIFDEVHCLGGEIGAEIWEHLLVMIRCPFLALSATISNPEHLTEWLQSVKWYWKQEDKIIENNTASKRHVGRQAGFPKDYLQVK--QSYKVRLVLYGERYNDLEKHVCS------IKHGDIHFDHFHPCAALTTDHIERYGFPPDLTLSPRESIQLYDAMFQIWKSWPRAQELC---PENFIHFNNKLVIKKMDARKYEESLKAELTSWIKNGNVEQARMVLQNLS---PEADLSPENMITMFPLLVEKLRKMEKLPALFFLFKLGAVENAAESVSTFLKKKQETKRPPKADKEAHVMANKLRKVKKSIEKQKIIDEKSQKKTRNVDQSLIHEAEHDNLVKCLEKNLEI-----PQDCTYADQKAVDTETLQKVFGRV--KFERKGEELKALA--ERGIGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVFAQNSVYLDALNYRQMSGRAGRRGQDLMGDVYFFDIPFPKIGKLIKSNVPELRGHFPLSITLVLRLMLLASKGDDP--------EDAKAKVLSVLKHSLLSFKQPRVMDMLKLYFLFSLQFLVKEGYLDQEGNPMGFAGLVSHLHYHEPSNLVFVSFLVNGLFHDLC-QPTRKGSKHFSQDVMEKLVLVLAHLFGRRYFPPKFQDAHFEFY-QSKVFLDDLPEDFSDALDEYNMKIMEDFTTFLRIVSKLAD--MNQEYQLPLSKIKF-TGKEC----EDSQLVSHLMSCKEGRVAISPFVCLSGNFDDDLLRLETPNHVTL-GTIGVNRSQAPVLLSQKFDNRGRKMSLNAYALDFYKHGSLIGLVQDNRMNEGDAYYLLKDFALTIKSISVSLRELCENEDDNVVLAFEQLSTTFWEKL 1709 The following BLAST results are available for this feature:
BLAST of TCONS_00071010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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