TCONS_00071010-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071010-protein
Unique NameTCONS_00071010-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1131

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071010-protein ID=TCONS_00071010-protein|Name=TCONS_00071010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1131bp
MQLNRSXVHAPKGHNKKSHAAEQIIAANIQTKNDEARQQAEKNVIETIKE
VDQLSKDANYHAGIELIQSKEKCFTTEESQKKIRLKMLDIYELQLKHDCQ
HDEKARQKVTIEMFLLVRRLHTKYVSILNEEDRMKLSASLSGLGFTALAE
RLFNGQPSEEADENHIEFQLKNIGHLLPRNVRTDPDPRIKGFFPDTWQRQ
LFDAIDLNQSALIVAPTSSGKTFASYYSMEKILRKNNDDIVVYVSPTKAL
VNQVQAYIYKKFDKPNMPNGKVVCGTFTRDYRNNVMNCQILVTVPQCLEI
LLLSADSFSWSKNITYVIFDEIHFIGSEEGAEVWEHLLCLITCPFLALSA
TVANPDDLHKWLQSAQNFQKENKTMYYQERSDESYVVQKVVVSDRHSDLE
NHVFTPDESLEIKSSPEALHRMHPYVTLKSGLNKKREIPSHLTMSPQECL
ILYKTMLEEWPDCQELIQLDPSFFFQGEMFLTRDDVRRYEAALKTEFQNW
IIRNMVKAERVLEKLYLGISDHDVTQSDVYKHFVSLVKTIESRDMLPVIV
FCLERALCEYLTKMVVEYFKVKEAIFFADKKEKKLTNFEKQAAKKERDKK
TDEEQSVRKNRFEDEKNLWFDHEFCPQGGSFRGKGVADKEDLEFLYRRIV
GKMSRTSFFMSFMEGIRYGISYHHSGMNNAMRSTVEILFRKKFINIVCAT
STLAVGIHVPCRSVVIASHNQYLNTLVFRQMAGRSGRRGFDMVGNVIFHA
VPNRKISKLVSGDLPYLLGNYPLSVTLCLRLLTVVEEVRENGKQTAKCRS
DTIARALNLLKNPLILQHIPHLDVQFKHFFLFSTQFLVKERLLKLNGKPQ
GLAGLAAHLFYHEPCNYAFIACIQNETFHKFCNQGRRDVNGIFDEDFLRN
LVLVLSHFFARKQLHESHLKYRNKSIVQLQELPPKFAESIRLYNERVEEV
YDMYLHATSSYIEEVFGEDHTLPLSLVQFPTMKDVSIPSNGNNIQDKLFS
LASDNKCCSSFAALSGHTDQQRVYNYTDQTTNVRHQIYTDVHEIPIMNTE
DVLNSYALDFFKHGDPDAIQEENHLKSGEDYDSLKDFMLTIKTISCSLEL
FAPRHDIVRIAFLQLSQEYQRRFQACEKYNR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044127XLOC_044127Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071010TCONS_00071010Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..57
NoneNo IPR availableCOILSCoilCoilcoord: 578..610
NoneNo IPR availableGENE3D3.40.50.300coord: 12..396
e-value: 1.4E-29
score: 102.6
NoneNo IPR availableGENE3D3.40.50.300coord: 516..750
e-value: 1.9E-20
score: 72.5
NoneNo IPR availableCDDcd00046DEXDccoord: 209..351
e-value: 4.03812E-19
score: 85.0816
NoneNo IPR availableCDDcd00079HELICccoord: 668..739
e-value: 4.90823E-10
score: 57.6329
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 657..739
e-value: 6.2E-12
score: 55.7
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 667..739
e-value: 5.0E-7
score: 30.0
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 593..779
score: 9.359
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 190..381
e-value: 1.2E-19
score: 81.3
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 202..370
score: 20.355
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 198..353
e-value: 4.0E-17
score: 62.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 509..567
coord: 666..752
coord: 209..355

Blast
BLAST of TCONS_00071010-protein vs. Swiss-Prot (Human)
Match: DDX60 (Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60 PE=1 SV=3)

HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 422/1193 (35.37%), Postives = 643/1193 (53.90%), Query Frame = 0
Query:   10 APKGHNKKSHAAEQIIAANIQTKNDEARQ-QAEKNVIETIKEVDQLSKDANYHAGIELIQSKEKCFTTEESQKKIRLKMLDIYEL--QLKHDCQHDEKARQK---VTIEMFLLVRRLHTKYVSILNEEDRMKLSASLSGLGFTALAERLFNGQPSEEADENHIE---------------FQLKNIGHLLPRNVRTDPDPRIKGFFPDTWQRQLFDAIDLNQSALIVAPTSSGKTFASYYSMEKILRKNNDDIVVYVSPTKALVNQVQAYIYKKFDKPNMPNGKVVCGTFTRDYRNNVMNCQILVTVPQCLEILLLSADSFSWSKNITYVIFDEIHFIGSEEGAEVWEHLLCLITCPFLALSATVANPDDLHKWLQSAQNFQK------ENKTM--------------YYQERSDESYVVQKVVVSDRHSDLENHVFTPDESLEIKSSPEALHRMHPYVTLKSGLNKKREIPSHLTMSPQECLILYKTMLE---EWPDCQELIQLDPSFF--FQGEMFLTRDDVRRYEAALKTEFQNWIIR-NMVKAERVLEKLYLGISDHDVTQSDVYKHFVSLVKTIESRDMLPVIVFCLERALCEYLTKMVVEYFKVKEAIFF---ADKKEKKLTNFEKQAAKKERDKKTDEEQSVRKNRFED----------------EKNLWFDHEFCPQGGSFRGKGVADKEDLEFLYRRIVGKMSRTSFFMSFMEGIRYGISYHHSGMNNAMRSTVEILFRKKFINIVCATSTLAVGIHVPCRSVVIASHNQYLNTLVFRQMAGRSGRRGFDMVGNVIFHAVPNRKISKLVSGDLPYLLGNYPLSVTLCLRLLTVVEEVRENGKQTAKCRSDTIARALNLLKNPLILQHIPHLDVQFKHFFLFSTQFLVKERLLKLNGKPQGLAGLAAHLFYHEPCNYAFIACIQNETFHKFCNQGRRDVNGIFDEDFLRNLVLVLSHFFARK----QLHESHLKYRNKSIVQLQELPPKFAESIRLYNERVEEVYDMYLHATSSYIEEVFGEDHTLPLSLVQFPTMKDVSIPSNGNNIQDKLFSLASDNKCCSSFAALSGHTDQQRVYNYTDQTTNVRHQIYTDVHEIPIMNTEDV--------LNSYALDFFKHGDPDAIQEENHLKSGEDYDSLKDFMLTIKTISCSL-ELFAPRHDIVRIAFLQLSQEYQRRF 1123
             PK  +KK+H  +  I A    K   AR+ Q E+     +    +     N H+GI+ ++   K  + + S  K++++M+ +       K  C+ +E    K   + +++   +  L  KY  +L E+DR  ++  L  LGF  LA  L    P+++A EN ++               FQL+ +GH L R+ R DPDPR++ F PDTWQR+L D +D N+SA+IVAPTSSGKT+ASYY MEK+L++++D +VVYV+PTKALVNQV A +  +F K N+P+G+V+CG FTR+YR++ +NCQ+L+TVP C EILLL+    +W K I YVIFDE+H +G E GAE+WEHLL +I CPFLALSAT++NP+ L +WLQS + + K      EN T               Y Q +  +SY V+ V+  +R++DLE HV +      IK         HP   L +   ++   P  LT+SP+E + LY  M +    WP  QEL    P  F  F  ++ + + D R+YE +LK E  +WI   N+ +A  VL+ L     + D++  ++   F  LV+ +   + LP + F  +    E   + V  + K K+       ADK+   + N  ++  K    +K  +E+S +K R  D                EKNL       PQ  ++  +   D E L+ ++ R+  K  R    +  +     GI YHHS M+   +  VEILFRK ++ +V AT TLA+G+++PC+SVV A ++ YL+ L +RQM+GR+GRRG D++G+V F  +P  KI KL+  ++P L G++PLS+TL LRL+ +  +  +          D  A+ L++LK+ L+    P +    K +FLFS QFLVKE  L   G P G AGL +HL YHEP N  F++ + N  FH  C Q  R  +  F +D +  LVLVL+H F R+    +  ++H ++  +S V L +LP  F++++  YN ++ E +  +L   S   +    +++ LPLS ++F T K+       + +   L S        S F  LSG+ D   +   T     +   I  +  + P++ ++          LN+YALDF+KHG    + ++N +  G+ Y  LKDF LTIK+IS SL EL     D V +AF QLS  +  + 
Sbjct:  567 GPK--SKKAHETKAEIIARENKKRLFAREEQKEEQKWNALSFSIEEQLKENLHSGIKSLEDFLK--SCKSSCVKLQVEMVGLTACLKAWKEHCRSEEGKTTKDLSIAVQVMKRIHSLMEKYSELLQEDDRQLIARCLKYLGFDELASSL---HPAQDA-ENDVKVKKRNKYSVGIGPARFQLQYMGHYLIRDERKDPDPRVQDFIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPTKALVNQVAATVQNRFTK-NLPSGEVLCGVFTREYRHDALNCQVLITVPACFEILLLAPHRQNWVKKIRYVIFDEVHCLGGEIGAEIWEHLLVMIRCPFLALSATISNPEHLTEWLQSVKWYWKQEDKIIENNTASKRHVGRQAGFPKDYLQVK--QSYKVRLVLYGERYNDLEKHVCS------IKHGDIHFDHFHPCAALTTDHIERYGFPPDLTLSPRESIQLYDAMFQIWKSWPRAQELC---PENFIHFNNKLVIKKMDARKYEESLKAELTSWIKNGNVEQARMVLQNLS---PEADLSPENMITMFPLLVEKLRKMEKLPALFFLFKLGAVENAAESVSTFLKKKQETKRPPKADKEAHVMANKLRKVKKSIEKQKIIDEKSQKKTRNVDQSLIHEAEHDNLVKCLEKNLEI-----PQDCTYADQKAVDTETLQKVFGRV--KFERKGEELKALA--ERGIGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVFAQNSVYLDALNYRQMSGRAGRRGQDLMGDVYFFDIPFPKIGKLIKSNVPELRGHFPLSITLVLRLMLLASKGDDP--------EDAKAKVLSVLKHSLLSFKQPRVMDMLKLYFLFSLQFLVKEGYLDQEGNPMGFAGLVSHLHYHEPSNLVFVSFLVNGLFHDLC-QPTRKGSKHFSQDVMEKLVLVLAHLFGRRYFPPKFQDAHFEFY-QSKVFLDDLPEDFSDALDEYNMKIMEDFTTFLRIVSKLAD--MNQEYQLPLSKIKF-TGKEC----EDSQLVSHLMSCKEGRVAISPFVCLSGNFDDDLLRLETPNHVTL-GTIGVNRSQAPVLLSQKFDNRGRKMSLNAYALDFYKHGSLIGLVQDNRMNEGDAYYLLKDFALTIKSISVSLRELCENEDDNVVLAFEQLSTTFWEKL 1709          
The following BLAST results are available for this feature:
BLAST of TCONS_00071010-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX600.000e+035.37Probable ATP-dependent RNA helicase DDX60 OS=Homo ... [more]
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