TCONS_00070310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070310
Unique NameTCONS_00070310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070310 ID=TCONS_00070310|Name=TCONS_00070310|organism=Clytia hemisphaerica|type=transcript|length=1245bp
aaaaatacaaatagacaaagaaaaataacaaagcAATCACCATGGGTGAC
GAAGAATACCAAGCAACGTTACAACGTAAACATCAAGAGAGGTTGGCGCA
ATTCGCGGTACGCCGTCAAGAACGTTTAGCGCACTACGCGGTCAAGAAAC
AGACGCGAACGCATCACACGGAAAACAGTAACGAAACAGCTGAAGCTTTC
TTAGAAACGTTCAATAAAGAGAAACGTCAGATCCTGCATCAGTTGAATGA
GCTGACTGATAAAACACCTGTTTTCGAACGTGCCGCTAAATTTGACGTCG
TACTTCAAAATATTTCGAATATTTGGAAATTTATCTCTGACTCGTTGGCG
TTTCTACCGAATTATGACGTAAGGCGTGCGCAAGATATCGTCAAAGAGGT
CAGGCTTCAGGTTATCGAGAAAAGAGACCTATTAATGCCGAAAAAGAAGT
TCGCTTTCAAATCACGACAACGTTTGACGCCCTCCAAGACCAATAAGGAC
AAACCGTTGGAGGAAAAGAATACTATTTCCGTCATAACGTCATTGTCGTC
GTCAAATGTCGGGTTTTCAGACCGTCTTGACGAAACCTTGAATCTCGATT
CTAACGAATGTACTGGCAAAGATTTAAATTTATCCAATATTTCGAATTGT
ACTATTTACATCAAAGGTGCTCCATCAGCTATGAGACTTAACAACGTCAT
TAACAGCCGTGTATTTTGCGGACCTATTGCAAGATCTATATTTGTGAATG
ATTGTATTGACTCTGAGTTGAATCTTGCTTGCCAACAATTGAGAATTCAC
ACTTCGATCAATTCCAAATTCTTCGTTCACGTCACCAGCAAAGTAATCAT
TGAGGATTGTGAAGAATTGAGTTTCGGTAAATATATTTTCCATTATGAAA
CTTTGGAAGAGGATTTCGAAAATTCGAAACTGCCACGTGATGTTAATAAC
TGGCGTGACGTGGATGATTTTAATTGGTTGAAATTAGATGAACCGTCTCC
TAACTGGTCATTGATTGAATGTTGAGATATTTGAGTTATAATGAATATTC
ACAAAGATAGaattgttttttaattattcgATCTTCACttattatcgata
ttttttatttctattttatttttcatctatTGATACGAAACACTGCATCC
CAGCCAAGGTTTGAATTGCAGCCGCCTAACCCTAAAATTCGAGTAAACTC
AGTGTTGTCAAGGAATATTTGGTCCCGCTCAAAATTCTAGTCAAG
Run BLAST on NCBI

protein sequence of TCONS_00070310-protein

>TCONS_00070310-protein ID=TCONS_00070310-protein|Name=TCONS_00070310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MGDEEYQATLQRKHQERLAQFAVRRQERLAHYAVKKQTRTHHTENSNETA
EAFLETFNKEKRQILHQLNELTDKTPVFERAAKFDVVLQNISNIWKFISD
SLAFLPNYDVRRAQDIVKEVRLQVIEKRDLLMPKKKFAFKSRQRLTPSKT
NKDKPLEEKNTISVITSLSSSNVGFSDRLDETLNLDSNECTGKDLNLSNI
SNCTIYIKGAPSAMRLNNVINSRVFCGPIARSIFVNDCIDSELNLACQQL
RIHTSINSKFFVHVTSKVIIEDCEELSFGKYIFHYETLEEDFENSKLPRD
VNNWRDVDDFNWLKLDEPSPNWSLIEC
Run BLAST on NCBI

transcript from alignment at scaffold_52:47846..49090

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070310 ID=TCONS_00070310|Name=TCONS_00070310|organism=Clytia hemisphaerica|type=transcript|length=1245bp|location=Sequence derived from alignment at scaffold_52:47846..49090 (Clytia hemisphaerica)
CTTGACTAGAATTTTGAGCGGGACCAAATATTCCTTGACAACACTGAGTT
TACTCGAATTTTAGGGTTAGGCGGCTGCAATTCAAACCTTGGCTGGGATG
CAGTGTTTCGTATCAatagatgaaaaataaaatagaaataaaaaatatcg
ataataaGTGAAGATcgaataattaaaaaacaattCTATCTTTGTGAATA
TTCATTATAACTCAAATATCTCAACATTCAATCAATGACCAGTTAGGAGA
CGGTTCATCTAATTTCAACCAATTAAAATCATCCACGTCACGCCAGTTAT
TAACATCACGTGGCAGTTTCGAATTTTCGAAATCCTCTTCCAAAGTTTCA
TAATGGAAAATATATTTACCGAAACTCAATTCTTCACAATCCTCAATGAT
TACTTTGCTGGTGACGTGAACGAAGAATTTGGAATTGATCGAAGTGTGAA
TTCTCAATTGTTGGCAAGCAAGATTCAACTCAGAGTCAATACAATCATTC
ACAAATATAGATCTTGCAATAGGTCCGCAAAATACACGGCTGTTAATGAC
GTTGTTAAGTCTCATAGCTGATGGAGCACCTTTGATGTAAATAGTACAAT
TCGAAATATTGGATAAATTTAAATCTTTGCCAGTACATTCGTTAGAATCG
AGATTCAAGGTTTCGTCAAGACGGTCTGAAAACCCGACATTTGACGACGA
CAATGACGTTATGACGGAAATAGTATTCTTTTCCTCCAACGGTTTGTCCT
TATTGGTCTTGGAGGGCGTCAAACGTTGTCGTGATTTGAAAGCGAACTTC
TTTTTCGGCATTAATAGGTCTCTTTTCTCGATAACCTGAAGCCTGACCTC
TTTGACGATATCTTGCGCACGCCTTACGTCATAATTCGGTAGAAACGCCA
ACGAGTCAGAGATAAATTTCCAAATATTCGAAATATTTTGAAGTACGACG
TCAAATTTAGCGGCACGTTCGAAAACAGGTGTTTTATCAGTCAGCTCATT
CAACTGATGCAGGATCTGACGTTTCTCTTTATTGAACGTTTCTAAGAAAG
CTTCAGCTGTTTCGTTACTGTTTTCCGTGTGATGCGTTCGCGTCTGTTTC
TTGACCGCGTAGTGCGCTAAACGTTCTTGACGGCGTACCGCGAATTGCGC
CAACCTCTCTTGATGTTTACGTTGTAACGTTGCTTGGTATTCTTCGTCAC
CCATGGTGATTgctttgttatttttctttgtctatttgtattttt

Coding sequence (CDS) from alignment at scaffold_52:47846..49090

>TCONS_00070310 ID=TCONS_00070310|Name=TCONS_00070310|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_52:47846..49090 (Clytia hemisphaerica)
TCAACATTCAATCAATGACCAGTTAGGAGACGGTTCATCTAATTTCAACC
AATTAAAATCATCCACGTCACGCCAGTTATTAACATCACGTGGCAGTTTC
GAATTTTCGAAATCCTCTTCCAAAGTTTCATAATGGAAAATATATTTACC
GAAACTCAATTCTTCACAATCCTCAATGATTACTTTGCTGGTGACGTGAA
CGAAGAATTTGGAATTGATCGAAGTGTGAATTCTCAATTGTTGGCAAGCA
AGATTCAACTCAGAGTCAATACAATCATTCACAAATATAGATCTTGCAAT
AGGTCCGCAAAATACACGGCTGTTAATGACGTTGTTAAGTCTCATAGCTG
ATGGAGCACCTTTGATGTAAATAGTACAATTCGAAATATTGGATAAATTT
AAATCTTTGCCAGTACATTCGTTAGAATCGAGATTCAAGGTTTCGTCAAG
ACGGTCTGAAAACCCGACATTTGACGACGACAATGACGTTATGACGGAAA
TAGTATTCTTTTCCTCCAACGGTTTGTCCTTATTGGTCTTGGAGGGCGTC
AAACGTTGTCGTGATTTGAAAGCGAACTTCTTTTTCGGCATTAATAGGTC
TCTTTTCTCGATAACCTGAAGCCTGACCTCTTTGACGATATCTTGCGCAC
GCCTTACGTCATAATTCGGTAGAAACGCCAACGAGTCAGAGATAAATTTC
CAAATATTCGAAATATTTTGAAGTACGACGTCAAATTTAGCGGCACGTTC
GAAAACAGGTGTTTTATCAGTCAGCTCATTCAACTGATGCAGGATCTGAC
GTTTCTCTTTATTGAACGTTTCTAAGAAAGCTTCAGCTGTTTCGTTACTG
TTTTCCGTGTGATGCGTTCGCGTCTGTTTCTTGACCGCGTAGTGCGCTAA
ACGTTCTTGACGGCGTACCGCGAATTGCGCCAACCTCTCTTGATGTTTAC
GTTGTAACGTTGCTTGGTATTCTTCGTCACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043786XLOC_043786Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070310-proteinTCONS_00070310-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070310-exon-scaffold_52-1491911889:47846..49090TCONS_00070310-exon-scaffold_52-1491911889:47846..49090Clytia hemisphaericaexon
TCONS_00070310-exon-scaffold_52-1510915933:47846..49090TCONS_00070310-exon-scaffold_52-1510915933:47846..49090Clytia hemisphaericaexon
TCONS_00070310-exon-scaffold_52-1575043694:47846..49090TCONS_00070310-exon-scaffold_52-1575043694:47846..49090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:47846..49090 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.7938	13.9922	6.90175	4.74177	9.00533	6.45926	7.00033	7.50164	4.53063	5.14724	4.02459	2.55438	3.59849	4.1155	4.21965	4.42399	6.22122	5.11178	3.71312	2.78081	4.0063	3.05232	21.7918	18.0628	5.69893	7.97378	4.55479	5.66281	13.4933	15.1029
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006599CARP_motif
IPR012945Tubulin-bd_cofactor_C_dom
IPR031925TBCC_N
IPR017901C-CAP_CF_C-like
Vocabulary: Molecular Function
TermDefinition
GO:0015631tubulin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0015631 tubulin binding
Blast
[Close]
BLAST of TCONS_00070310 vs. Swiss-Prot (Human)
Match: TBCC (Tubulin-specific chaperone C OS=Homo sapiens GN=TBCC PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.103e-61
Identity = 120/349 (34.38%), Postives = 187/349 (53.58%), Query Frame = 3 
Query:   33 AITMGDEEYQ-------ATLQRKHQERLAQFAVRRQERLAHYAVKKQTRTHHTENSNETAEAFLETFNKEKRQILHQLNELTDKTPVFERAAKFDVVLQNISNIWKFISDSLAFLPNYDVRRAQDIVKEVRLQVIEKRDLLMPKKKFAFKSRQRLTPSKTN--------------KDKPLEEKNTISVITSLSSSNVGFSDRLDETLNLDSNECTGKDLNLSNISNCTIYIKGAPSAMRLNNVINSRVFCGPIARSIFVNDCIDSELNLACQQLRIHTSINSKFFVHVTSKVIIEDCEELSFGKYIFHYETLEEDFENSKLPRDVNNWRDVDDFNWLKLDEPSPNWSLI 1016
            A+  GD E Q         LQR+ QER  +   R+Q+R             + E   E +  F+ TF +E+  +     EL ++    ER  +    LQ +    K I+DS+ FL  YD+R+ Q+ +  ++  + E+R  L PKK+FAFK+R +   S T               +D PL +K    +  S      GFS+   + L   ++E   +D+ L+ +SNCT+ + G P+ +RL    + ++ CGP++ S+F+ DC D  L +ACQQLRIH++ +++ F+ VTS+ I+EDC  + F  Y + Y  +++DFE+S L R  NNW DVDDFNWL  D  SPNWS++
Sbjct:   10 AVRTGDMESQRDLSLVPERLQRREQERQLEVERRKQKR------------QNQEVEKENSHFFVATFVRERAAV----EELLERAESVERLEEAASRLQGLQ---KLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAFKTRGKDAASSTKVDAAPGIPPAVESIQDSPLPKKAEGDLGPSWV---CGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSIL 336
The following BLAST results are available for this feature:
BLAST of TCONS_00070310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBCC3.103e-6134.38Tubulin-specific chaperone C OS=Homo sapiens GN=TB... [more]
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