TCONS_00070310-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070310-protein
Unique NameTCONS_00070310-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070310-protein ID=TCONS_00070310-protein|Name=TCONS_00070310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MGDEEYQATLQRKHQERLAQFAVRRQERLAHYAVKKQTRTHHTENSNETA
EAFLETFNKEKRQILHQLNELTDKTPVFERAAKFDVVLQNISNIWKFISD
SLAFLPNYDVRRAQDIVKEVRLQVIEKRDLLMPKKKFAFKSRQRLTPSKT
NKDKPLEEKNTISVITSLSSSNVGFSDRLDETLNLDSNECTGKDLNLSNI
SNCTIYIKGAPSAMRLNNVINSRVFCGPIARSIFVNDCIDSELNLACQQL
RIHTSINSKFFVHVTSKVIIEDCEELSFGKYIFHYETLEEDFENSKLPRD
VNNWRDVDDFNWLKLDEPSPNWSLIEC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043786XLOC_043786Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070310TCONS_00070310Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006599CARP_motif
IPR012945Tubulin-bd_cofactor_C_dom
IPR031925TBCC_N
IPR017901C-CAP_CF_C-like
Vocabulary: Molecular Function
TermDefinition
GO:0015631tubulin binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0015631 tubulin binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 54..74
NoneNo IPR availableGENE3D2.160.20.70coord: 144..313
e-value: 3.4E-22
score: 78.0
IPR006599CARP motifSMARTSM00673carpcoord: 238..272
e-value: 0.23
score: 20.6
coord: 200..237
e-value: 0.2
score: 20.8
IPR012945Tubulin binding cofactor C-like domainPFAMPF07986TBCCcoord: 193..310
e-value: 1.1E-37
score: 128.3
IPR031925Tubulin-specific chaperone C, N-terminalPFAMPF16752TBCC_Ncoord: 23..135
e-value: 1.2E-19
score: 70.8
IPR017901C-CAP/cofactor C-like domainPROSITEPS51329C_CAP_COFACTOR_Ccoord: 147..312
score: 33.326

Blast
[Close]
BLAST of TCONS_00070310-protein vs. Swiss-Prot (Human)
Match: TBCC (Tubulin-specific chaperone C OS=Homo sapiens GN=TBCC PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 5.789e-63
Identity = 115/330 (34.85%), Postives = 181/330 (54.85%), Query Frame = 0 
Query:   10 LQRKHQERLAQFAVRRQERLAHYAVKKQTRTHHTENSNETAEAFLETFNKEKRQILHQLNELTDKTPVFERAAKFDVVLQNISNIWKFISDSLAFLPNYDVRRAQDIVKEVRLQVIEKRDLLMPKKKFAFKSRQRLTPSKTN--------------KDKPLEEKNTISVITSLSSSNVGFSDRLDETLNLDSNECTGKDLNLSNISNCTIYIKGAPSAMRLNNVINSRVFCGPIARSIFVNDCIDSELNLACQQLRIHTSINSKFFVHVTSKVIIEDCEELSFGKYIFHYETLEEDFENSKLPRDVNNWRDVDDFNWLKLDEPSPNWSLI 325
            LQR+ QER  +   R+Q+R             + E   E +  F+ TF +E+  +     EL ++    ER  +    LQ +    K I+DS+ FL  YD+R+ Q+ +  ++  + E+R  L PKK+FAFK+R +   S T               +D PL +K    +  S      GFS+   + L   ++E   +D+ L+ +SNCT+ + G P+ +RL    + ++ CGP++ S+F+ DC D  L +ACQQLRIH++ +++ F+ VTS+ I+EDC  + F  Y + Y  +++DFE+S L R  NNW DVDDFNWL  D  SPNWS++
Sbjct:   29 LQRREQERQLEVERRKQKR------------QNQEVEKENSHFFVATFVRERAAV----EELLERAESVERLEEAASRLQGLQ---KLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAFKTRGKDAASSTKVDAAPGIPPAVESIQDSPLPKKAEGDLGPSWV---CGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSIL 336
The following BLAST results are available for this feature:
BLAST of TCONS_00070310-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBCC5.789e-6334.85Tubulin-specific chaperone C OS=Homo sapiens GN=TB... [more]
back to top