TCONS_00069692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069692
Unique NameTCONS_00069692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069692 ID=TCONS_00069692|Name=TCONS_00069692|organism=Clytia hemisphaerica|type=transcript|length=1292bp
ATACTGATAAAACTTCTCCGAAGGAGTGCAACCCTCTAAAGAAGAAGTGT
CTAGAATATCAAATGATATATAAAGCTCTCCCTCGCTATGCTTTTAATTG
ATTTCTCATCATGAGATATGTGGTTGTTATGTCATCAAAACATTAGAGAG
ATCACGAGGTTGTCATGCTTGTCAAACACTGTGGTTTCCCTGTATAAAGT
TTGTGTTTTGATGAATATTTTCGTTGTCATATTCTAAGTTGAACACACAA
GGATACAAACATGTTACGAATTTTAGTTCTTGTAAGCGCTTTTGTAGCTT
TATCCTTGGCTGCAGAATCCAAGAAAAATGAATGCCATAAAGGTCCATCG
TATTGGTGTCAAAATTACGTCATTGCAACTAAATGTGGtgtaaaatcgtt
ctgtaataTCATCAAGGATGGTAAGATTCGATTCCACCCATCAGCACCAA
AGAAGACAGTGGAAGTTGGACCACCTCCAGTTAATGTGTCGTTCTACTAC
GAATCTTTGTGTCCAGGATGTCGTGGAGTATGGCGTGATCAATTATTCCC
AACCTACCAAAAACTTGCCAGCTCAGGAATCGTCAACTTTGAATTTATCC
CATATGGTAATGCTCAAGAACAACCATACGGTAGCTCATGGTATTTCACT
TGTCAACATGGTTCGGCTGAATGCTTAGGAAACCTCATTGAGACATGTGC
AATCCATTACAATCCAGACGCATCCAAAATCATCCCTTTCTTACATTGCT
TAGAAGAATACGGTCCAACACAAACCAACGCTCAATACTGTGCTGGAATT
GCTAAAATCGATTATAATACAATCTACACGTGTTCTGTTGGTGATGAAGG
CAAGCAAGTAGAACATCAAATGGCTCTCAAAACAGAGGCTTTGAACCCAC
CCCATCAATATGTTCCTTGGTTAACCATGAATGGTCAACACACCACTGCT
ATTCAAAATGGACTGAGTAGCAACATGTTAGCAACAATCTGTAATGCATA
TACTGGTGCTAAGCCAGCTGCTTGCTCCCAAGCCAAGCAAACAATCTGTG
TCAAAAAACACTAGATTCTGGAAATAAAATTTAGAGGATGGATAAGATAA
GAGGAGCTCGAAATTTATGTCTTATTTACGTTTTGAGCTCCTATCAAGAT
CTACCTACCTCTGCATACTGTAAACCTGTAAATAGACTTTTATGATATTT
TAGGGaattttttcatgatattttgttatataggtaaaaaattagaattt
aaaaaataaagcaCATCACGAACTTAAAACGCAAAAACAGAA
Run BLAST on NCBI

protein sequence of TCONS_00069692-protein

>TCONS_00069692-protein ID=TCONS_00069692-protein|Name=TCONS_00069692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MLRILVLVSAFVALSLAAESKKNECHKGPSYWCQNYVIATKCGVKSFCNI
IKDGKIRFHPSAPKKTVEVGPPPVNVSFYYESLCPGCRGVWRDQLFPTYQ
KLASSGIVNFEFIPYGNAQEQPYGSSWYFTCQHGSAECLGNLIETCAIHY
NPDASKIIPFLHCLEEYGPTQTNAQYCAGIAKIDYNTIYTCSVGDEGKQV
EHQMALKTEALNPPHQYVPWLTMNGQHTTAIQNGLSSNMLATICNAYTGA
KPAACSQAKQTICVKKH
Run BLAST on NCBI

transcript from alignment at scaffold_506:323805..325449+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069692 ID=TCONS_00069692|Name=TCONS_00069692|organism=Clytia hemisphaerica|type=transcript|length=1645bp|location=Sequence derived from alignment at scaffold_506:323805..325449+ (Clytia hemisphaerica)
ATACTGATAAAACTTCTCCGAAGGAGTGCAACCCTCTAAAGAAGAAGTGT
CTAGAATATCAAATGATATATAAAGCTCTCCCTCGCTATGCTTTTAATTG
ATTTCTCATCATGAGATATGTGGTTGTTATGTCATCAAAACATTAGAGAG
ATCACGAGGTTGTCATGCTTGTCAAACACTGTGGTTTCCCTGTATAAAGT
TTGTGTTTTGATGAATATTTTCGTTGTCATATTCTAAGTTGAACACACAA
GGATACAAACATGTTACGAATTTTAGTTCTTGTAAGCGCTTTTGTAGCTT
TATCCTTGGCTGCAGAATCCAAGAAAAATGAATGCCATAAAGGTCCATCG
TATTGGTGTCAAAATTACGTCATTGCAACTAAATGTGGtgtaaaatcgtt
ctgtaataTCATCAAGGATGGTAAGATTCGATTCCACCCATCAGCACCAA
AGAAGACAGTGGAAGTTGGACCACCTCCAGTTAATGTGTCGTTCTACTAC
GAATCTTTGTGTCCAGGATGTCGTGGAGTATGGCGTGATCAATTATTCCC
AACCTACCAAAAACTTGCCAGCTCAGGAATCGTCAACTTTGAATTTATCC
CATATGGTAATGCTCAAGAACAACCATACGGTAGCTCATGGTATTTCACT
TGTCAACATGGTTCGGCTGAATGCTTAGGTAAGAgcttatttaattttct
tattaAAGGCTGCTTAGATTaaacaatatattgacgaaaaATATTCGACA
ACATAGTTTTTGCTGACCATAATGTAATATCCCTCAAGCTGACAACATAT
TTTGTAGTTTATGGAGAcctttaaaatcattttcaaaccGTTAGCACTAA
GGGTTTGCATCTGTAATTTTCTTTTGCTCATCTACTAGTTATCCAGAATC
GTTGAAAGCTCCCAAATGCAGCACTTACCATTAATAACAATATTATGATA
TATTTGACCacaaattcaattcaaaaagaaatctACCAAACGAGTTCATC
GTGTAAATCAAACCTATCCTTTTCATTATAGGAAACCTCATTGAGACATG
TGCAATCCATTACAATCCAGACGCATCCAAAATCATCCCTTTCTTACATT
GCTTAGAAGAATACGGTCCAACACAAACCAACGCTCAATACTGTGCTGGA
ATTGCTAAAATCGATTATAATACAATCTACACGTGTTCTGTTGGTGATGA
AGGCAAGCAAGTAGAACATCAAATGGCTCTCAAAACAGAGGCTTTGAACC
CACCCCATCAATATGTTCCTTGGTTAACCATGAATGGTCAACACACCACT
GCTATTCAAAATGGACTGAGTAGCAACATGTTAGCAACAATCTGTAATGC
ATATACTGGTGCTAAGCCAGCTGCTTGCTCCCAAGCCAAGCAAACAATCT
GTGTCAAAAAACACTAGATTCTGGAAATAAAATTTAGAGGATGGATAAGA
TAAGAGGAGCTCGAAATTTATGTCTTATTTACGTTTTGAGCTCCTATCAA
GATCTACCTACCTCTGCATACTGTAAACCTGTAAATAGACTTTTATGATA
TTTTAGGGaattttttcatgatattttgttatataggtaaaaaattagaa
tttaaaaaataaagcaCATCACGAACTTAAAACGCAAAAACAGAA

Coding sequence (CDS) from alignment at scaffold_506:323805..325449+

>TCONS_00069692 ID=TCONS_00069692|Name=TCONS_00069692|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_506:323805..325449+ (Clytia hemisphaerica)
ATGTTACGAATTTTAGTTCTTGTAAGCGCTTTTGTAGCTTTATCCTTGGC
TGCAGAATCCAAGAAAAATGAATGCCATAAAGGTCCATCGTATTGGTGTC
AAAATTACGTCATTGCAACTAAATGTGGtgtaaaatcgttctgtaataTC
ATCAAGGATGGTAAGATTCGATTCCACCCATCAGCACCAAAGAAGACAGT
GGAAGTTGGACCACCTCCAGTTAATGTGTCGTTCTACTACGAATCTTTGT
GTCCAGGATGTCGTGGAGTATGGCGTGATCAATTATTCCCAACCTACCAA
AAACTTGCCAGCTCAGGAATCGTCAACTTTGAATTTATCCCATATGGTAA
TGCTCAAGAACAACCATACGGTAGCTCATGGTATTTCACTTGTCAACATG
GTTCGGCTGAATGCTTAGGAAACCTCATTGAGACATGTGCAATCCATTAC
AATCCAGACGCATCCAAAATCATCCCTTTCTTACATTGCTTAGAAGAATA
CGGTCCAACACAAACCAACGCTCAATACTGTGCTGGAATTGCTAAAATCG
ATTATAATACAATCTACACGTGTTCTGTTGGTGATGAAGGCAAGCAAGTA
GAACATCAAATGGCTCTCAAAACAGAGGCTTTGAACCCACCCCATCAATA
TGTTCCTTGGTTAACCATGAATGGTCAACACACCACTGCTATTCAAAATG
GACTGAGTAGCAACATGTTAGCAACAATCTGTAATGCATATACTGGTGCT
AAGCCAGCTGCTTGCTCCCAAGCCAAGCAAACAATCTGTGTCAAAAAACA
CTAGATGTTACGAATTTTAGTTCTTGTAAGCGCTTTTGTAGCTTTATCCT
TGGCTGCAGAATCCAAGAAAAATGAATGCCATAAAGGTCCATCGTATTGG
TGTCAAAATTACGTCATTGCAACTAAATGTGGtgtaaaatcgttctgtaa
taTCATCAAGGATGGTAAGATTCGATTCCACCCATCAGCACCAAAGAAGA
CAGTGGAAGTTGGACCACCTCCAGTTAATGTGTCGTTCTACTACGAATCT
TTGTGTCCAGGATGTCGTGGAGTATGGCGTGATCAATTATTCCCAACCTA
CCAAAAACTTGCCAGCTCAGGAATCGTCAACTTTGAATTTATCCCATATG
GTAATGCTCAAGAACAACCATACGGTAGCTCATGGTATTTCACTTGTCAA
CATGGTTCGGCTGAATGCTTAGGAAACCTCATTGAGACATGTGCAATCCA
TTACAATCCAGACGCATCCAAAATCATCCCTTTCTTACATTGCTTAGAAG
AATACGGTCCAACACAAACCAACGCTCAATACTGTGCTGGAATTGCTAAA
ATCGATTATAATACAATCTACACGTGTTCTGTTGGTGATGAAGGCAAGCA
AGTAGAACATCAAATGGCTCTCAAAACAGAGGCTTTGAACCCACCCCATC
AATATGTTCCTTGGTTAACCATGAATGGTCAACACACCACTGCTATTCAA
AATGGACTGAGTAGCAACATGTTAGCAACAATCTGTAATGCATATACTGG
TGCTAAGCCAGCTGCTTGCTCCCAAGCCAAGCAAACAATCTGTGTCAAAA
AACACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043396XLOC_043396Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069692-proteinTCONS_00069692-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069692-exon-scaffold_506-1491911889:323805..324482TCONS_00069692-exon-scaffold_506-1491911889:323805..324482Clytia hemisphaericaexon
TCONS_00069692-exon-scaffold_506-1510915933:323805..324482TCONS_00069692-exon-scaffold_506-1510915933:323805..324482Clytia hemisphaericaexon
TCONS_00069692-exon-scaffold_506-1575043694:323805..324482TCONS_00069692-exon-scaffold_506-1575043694:323805..324482Clytia hemisphaericaexon
TCONS_00069692-exon-scaffold_506-1491911889:324836..325449TCONS_00069692-exon-scaffold_506-1491911889:324836..325449Clytia hemisphaericaexon
TCONS_00069692-exon-scaffold_506-1510915933:324836..325449TCONS_00069692-exon-scaffold_506-1510915933:324836..325449Clytia hemisphaericaexon
TCONS_00069692-exon-scaffold_506-1575043694:324836..325449TCONS_00069692-exon-scaffold_506-1575043694:324836..325449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:323805..325449 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
139.159	145.541	99.8494	80.7769	6.40567	5.23639	18.1944	20.6608	122.567	118.925	132.922	77.8	164.316	134.081	133.243	139.636	141.379	131.978	485.994	546.346	104.363	115.08	186.075	228.894	380.1	449.251	187.177	270.134	355.888	274.946
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004911Interferon-induced_GILT
IPR003119SAP_A
Blast
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BLAST of TCONS_00069692 vs. Swiss-Prot (Human)
Match: GILT (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 8.114e-39
Identity = 74/199 (37.19%), Postives = 107/199 (53.77%), Query Frame = 3 
Query:  474 PPVNVSFYYESLCPGCRGVWRDQLFPTYQKLASSGIVNFEFIPYGNAQEQPYGSSWYFTCQHGSAECLGNLIETCAIHYNPDASKIIPFLHCLEEYGPTQTNAQYCAGI--AKIDYNTIYTCSVGDEGKQVEHQMALKTEALNPPHQYVPWLTMNGQHTTAIQNGLSSNMLATICNAYTGAKPAAC---SQAKQTICVK 1055
            P VNV+ YYE+LC GCR     +LFPT+  L    I+N   +PYGNAQEQ     W F CQHG  EC  N +E C +    D       + C+EE+   + +   C  +    +  +TI  C++GD G Q+ H  A +T+AL PPH+YVPW+T+NG+          + +L  +C  Y G KP  C   + + +++C K
Sbjct:   60 PLVNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLD-ELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLED-----QTQLLTLVCQLYQGKKPDVCPSSTSSLRSVCFK 250
The following BLAST results are available for this feature:
BLAST of TCONS_00069692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GILT8.114e-3937.19Gamma-interferon-inducible lysosomal thiol reducta... [more]
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