TCONS_00068542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068542
Unique NameTCONS_00068542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068542 ID=TCONS_00068542|Name=TCONS_00068542|organism=Clytia hemisphaerica|type=transcript|length=470bp
TGCACCAACTGTCAACGGTGGAAGCCTTggaataagaaaaaaagttaaca
aaCAGCAAGAGCAAATACTCACCATGAAGATATCTCAACTCACATTGTGT
GCAAAGCTATACATAAATACTTTCTACTCAGCTCAAAGAACTAGGACTGG
CTTCATTGAAGATCCAGAGAAAGCTATTAAAGAAGTAACATCAGATGTAA
CCGAGTAGCTCTCAAACAATTTGAACCAAGATAATCTGAAACTGAATAGA
ACAAAANGAACATCAGATGTAACCGATTAGCTCTCAAACAGTTTGAACCA
AAATAATCTGAAACTGAATAGAACAATGAATGGCAATTAgAACCAGGACT
GGCTTCATTGAGGATCCAGAGAAAGTGAACAGGAGGAACATCCCATGAAG
CCGAATAAGCTCTTCGTCTTGAACAATTGGAACTGAAGAATCCAAAGCTG
AATAGAACAATATTAATGGC
Run BLAST on NCBI

transcript from alignment at scaffold_485:379173..380422-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068542 ID=TCONS_00068542|Name=TCONS_00068542|organism=Clytia hemisphaerica|type=transcript|length=1250bp|location=Sequence derived from alignment at scaffold_485:379173..380422- (Clytia hemisphaerica)
TGCACCAACTGTCAACGGTGGAAGCCTTGGAATAAGAAAAAAAGTTAACA
AACAGCAAGAGCAAATACTCACCATGAAGATATCTCAACTCACATTGTGT
GCAAAGCTATACATAAATACTTTCTACTCAGCTCAAAGAACTAGGACTGG
CTTCATTGAAGATCCAGAGAAAGCTATTAAAGAAGTAACATCAGATGTAA
CCGAGTAGCTCTCAAACAATTTGAACCAAGATAATCTGAAACTGAATAGA
ACAAAANGAACATCAGATGTAACCGATTAGCTCTCAAACAGTTTGAACCA
AAATAATCTGAAACTGAATAGAACAATGAATGGCAATTAGGTATTGATTT
TTTAATTGATATGATATTTTTAATGGGATAACCTCTAGCTGGTTTTACTA
ATTCTTTTAAGACTGTTGTCAGGTATATCCGTGCGTCAAAGGTTGTTCTA
ACGCCCAGTTTTAATATGAAACTTCATTTTCCACTCAATTTTGAGAATCA
TAATTTGGCATTTTGGTTCCACAGTTTGAAGTTTACCACAGGGTAACTTT
TTGTCAATGTAGGTTCGGGCAGCAAATTTCGTCAAAATCATTACAATTTG
TGTCTTTTTGTTAAATTCCTTTTAAGGTTACAAAACTATTACTCTATGAA
TCTTAGAGAAATCACCTATAGTGTTGGACTTGAGAATTAAAACTATACCC
AAATATTTTCTACTACTAACTCAAAGAGTCGATTTCAGTCGATTTCGAGC
ATTGTAATTTGGCATATTTTCGGCTTGACTGAGGAAAAATTGTAATTTTC
TTTTGTCAGCGAAATTACTGAGTTGACAAAAGAAAAGATGCTTCAAAATT
GATAAAAATTGATTATTTTGAGAGTGTAATCGTTTTACAAGTATTTTTTG
CCATCCACAAAGTCAAAAGTTTCACAAAATTTGATCCTCTAGTGAATTAA
TTTGAAGTTACCCTTCGGGCAACACTTTGTTAATCTAAGTCTGGGCAACA
CATTTTCCAAAATGATCACAATTTTCACATCGCTTTCGTATTCCTTCTAA
GGTTGATCACCCCATAGCGCTGGACTTGAGAATTAAAGCTAAACCCAAGT
ATTTTTTACTTAACTCAAAGAACCAGGACTGGCTTCATTGAGGATCCAGA
GAAAGTGAACAGGAGGAACATCCCATGAAGCCGAATAAGCTCTTCGTCTT
GAACAATTGGAACTGAAGAATCCAAAGCTGAATAGAACAATATTAATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042746XLOC_042746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068542-exon-scaffold_485-1575043694:380083..380422TCONS_00068542-exon-scaffold_485-1575043694:380083..380422Clytia hemisphaericaexon
TCONS_00068542-exon-scaffold_485-1575043694:379173..379302TCONS_00068542-exon-scaffold_485-1575043694:379173..379302Clytia hemisphaericaexon
TCONS_00068542-exon-scaffold_485-1510915933:380083..380422TCONS_00068542-exon-scaffold_485-1510915933:380083..380422Clytia hemisphaericaexon
TCONS_00068542-exon-scaffold_485-1510915933:379173..379302TCONS_00068542-exon-scaffold_485-1510915933:379173..379302Clytia hemisphaericaexon
TCONS_00068542-exon-scaffold_485-1491911889:380083..380422TCONS_00068542-exon-scaffold_485-1491911889:380083..380422Clytia hemisphaericaexon
TCONS_00068542-exon-scaffold_485-1491911889:379173..379302TCONS_00068542-exon-scaffold_485-1491911889:379173..379302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:379173..380422 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.691221	0.32756	0.307814	0	1.46647	1.85465	0.349519	0.818039	0.343637	0.283767	0	0.181057	0.361611	0	0.540299	0.911151	1.02042	0.41836	0	0.453616	0.26285	0	0.155855	0.990518	3.15769	2.88634	0.186387	0	0.452615	0.307429
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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