TCONS_00068416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068416
Unique NameTCONS_00068416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068416 ID=TCONS_00068416|Name=TCONS_00068416|organism=Clytia hemisphaerica|type=transcript|length=704bp
GTATTAGACTAGCCTGGATATCTTTGCTTCGGAAATTCAGTCTAGAGGTG
TCGtgaatataaaataaaagttaaacttaTCTTTTCATCATTCGTCAATC
AGTATTGAGTAACTATCAGTTCTGAAGATGAAACTGTTCTTGGTCTTCCT
CGTTTCTCTTTCACTTTTGGACGCATCTAGTGACATTAACCTGCTGAAGt
ctcaaattcaaaaacttcaGACTGAAGTTACAAATGAAAAAGCTGAAATC
atagaattgaaatcaagaGTGCAAACAAGAAATGGAATTTGTCAAATCAA
TTCGAATCGATGCGGATCCTGTTTGTGCGTCGAAGAATACGGTTTAGTAA
ACGACAGATACCCACCCTCCCCTGTAAATTATTTCTGTGATTGCCGTGAA
AAGCCTGTTAGAAGAGATTGCAAGGAACATTATGACCAAGGAGAGAGGAT
AAATGGCCTTTATCGTGTTAGCATGAATGTTATTGGCCATGTCGTTCAAG
TGTCTTGTATGCAGGATCATTGGTATGGCAGTGGTGGTTGGACGGTATTT
CAGCGTCGCTTCGACGGATCGGAGAATTTTTATCGTTCGTGGCAAGAATA
TAAACACGGTTTTGGGAAACTTCAAGGTGAACATTGGCTGGGCAATGAAA
ATTTATACCGTTTGACCGCACAAGCTATTGTGAGTGGCTCGGAACTGAGT
GTAG
Run BLAST on NCBI

protein sequence of TCONS_00068416-protein

>TCONS_00068416-protein ID=TCONS_00068416-protein|Name=TCONS_00068416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MKLFLVFLVSLSLLDASSDINLLKSQIQKLQTEVTNEKAEIIELKSRVQT
RNGICQINSNRCGSCLCVEEYGLVNDRYPPSPVNYFCDCREKPVRRDCKE
HYDQGERINGLYRVSMNVIGHVVQVSCMQDHWYGSGGWTVFQRRFDGSEN
FYRSWQEYKHGFGKLQGEHWLGNENLYRLTAQAIVSGSELSV
Run BLAST on NCBI

transcript from alignment at scaffold_483:238887..239590

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068416 ID=TCONS_00068416|Name=TCONS_00068416|organism=Clytia hemisphaerica|type=transcript|length=704bp|location=Sequence derived from alignment at scaffold_483:238887..239590 (Clytia hemisphaerica)
CTACACTCAGTTCCGAGCCACTCACAATAGCTTGTGCGGTCAAACGGTAT
AAATTTTCATTGCCCAGCCAATGTTCACCTTGAAGTTTCCCAAAACCGTG
TTTATATTCTTGCCACGAACGATAAAAATTCTCCGATCCGTCGAAGCGAC
GCTGAAATACCGTCCAACCACCACTGCCATACCAATGATCCTGCATACAA
GACACTTGAACGACATGGCCAATAACATTCATGCTAACACGATAAAGGCC
ATTTATCCTCTCTCCTTGGTCATAATGTTCCTTGCAATCTCTTCTAACAG
GCTTTTCACGGCAATCACAGAAATAATTTACAGGGGAGGGTGGGTATCTG
TCGTTTACTAAACCGTATTCTTCGACGCACAAACAGGATCCGCATCGATT
CGAATTGATTTGACAAATTCCATTTCTTGTTTGCACtcttgatttcaatt
ctatGATTTCAGCTTTTTCATTTGTAACTTCAGTCtgaagtttttgaatt
tgagaCTTCAGCAGGTTAATGTCACTAGATGCGTCCAAAAGTGAAAGAGA
AACGAGGAAGACCAAGAACAGTTTCATCTTCAGAACTGATAGTTACTCAA
TACTGATTGACGAATGATGAAAAGAtaagtttaacttttattttatattc
aCGACACCTCTAGACTGAATTTCCGAAGCAAAGATATCCAGGCTAGTCTA
ATAC

Coding sequence (CDS) from alignment at scaffold_483:238887..239590

>TCONS_00068416 ID=TCONS_00068416|Name=TCONS_00068416|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_483:238887..239590 (Clytia hemisphaerica)
TACACTCAGTTCCGAGCCACTCACAATAGCTTGTGCGGTCAAACGGTATA
AATTTTCATTGCCCAGCCAATGTTCACCTTGAAGTTTCCCAAAACCGTGT
TTATATTCTTGCCACGAACGATAAAAATTCTCCGATCCGTCGAAGCGACG
CTGAAATACCGTCCAACCACCACTGCCATACCAATGATCCTGCATACAAG
ACACTTGAACGACATGGCCAATAACATTCATGCTAACACGATAAAGGCCA
TTTATCCTCTCTCCTTGGTCATAATGTTCCTTGCAATCTCTTCTAACAGG
CTTTTCACGGCAATCACAGAAATAATTTACAGGGGAGGGTGGGTATCTGT
CGTTTACTAAACCGTATTCTTCGACGCACAAACAGGATCCGCATCGATTC
GAATTGATTTGACAAATTCCATTTCTTGTTTGCACtcttgatttcaattc
tatGATTTCAGCTTTTTCATTTGTAACTTCAGTCtgaagtttttgaattt
gagaCTTCAGCAGGTTAATGTCACTAGATGCGTCCAAAAGTGAAAGAGAA
ACGAGGAAGACCAAGAACAGTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042689XLOC_042689Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068416-proteinTCONS_00068416-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068416-exon-scaffold_483-1491911889:238887..239590TCONS_00068416-exon-scaffold_483-1491911889:238887..239590Clytia hemisphaericaexon
TCONS_00068416-exon-scaffold_483-1510915933:238887..239590TCONS_00068416-exon-scaffold_483-1510915933:238887..239590Clytia hemisphaericaexon
TCONS_00068416-exon-scaffold_483-1575043694:238887..239590TCONS_00068416-exon-scaffold_483-1575043694:238887..239590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:238887..239590 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.209675	0	0	0.204193	0.0763773	0	0	0.301984	0	0.435681	0.190933	2.37825	1.85979	4.83497	11.3905	1.03366	1.63621	1.06522	1.24683	1.0099	0.740313	4.56417	5.60607	3.52115	5.60377	0	0.209767	14.7562	19.973
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00068416 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.254e-19
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = 2 
Query:  362 PPSPVNYFCDCREKPVRRDCKEHYDQGERINGLYRVSMNVIGHVVQVSCMQDHWYGSGGWTVFQRRFDGSENFYRSWQEYKHGFGKLQGEHWLGNENLYRLTAQA 676
            P  PVN    C+E P  R+C+E   QG  ++G Y + +   G  + V C  D     GGW VFQRR DGS +F+RSW  Y+ GFG  + E WLGNENL++LT Q 
Sbjct:   77 PGDPVNLL-RCQEGP--RNCRELLSQGATLSGWYHLCLPE-GRALPVFCDMD--TEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQG 175
The following BLAST results are available for this feature:
BLAST of TCONS_00068416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN31.254e-1945.71Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2[more]
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