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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068292 ID=TCONS_00068292|Name=TCONS_00068292|organism=Clytia hemisphaerica|type=transcript|length=1206bp
AACTGTCGCTTTGGGAACAAAAGATGAAGTTTATGCGACTGGTGATGCAG
GGTTGCTTGGAGCTGTTTTGGAAGCATATAATCATCAttggaatctcaaa
atttctCCTGATGATTTTTGGATCCCTGTTGCAATTCGTGTTGGTAGGAA
AATCAATGATAATGCTAAGAAGGACAAAGTTAGAGATTTCTTTGTTGATT
TCGAAGGCAAAAAAGAGATTGTCATTGAATCAGGGGCCTCGACAATTTAT
CAAGTTGATTATATCTGGttatttgaacaattttcacaaaacataaaaaa
tcttATCAAAAAGCCAGAGTACAACGACCTGATGACTGCTAGTTTTTCAA
CATCAACTCCGGTCACAAAAATCGCCTCCCAAATCAATATAATGTCTTCA
cttcaagaatattttgaattcaCTTGTGAGCTGATGTGCGGTATCAAAGG
AGTCGATATGACTGGCAATAAAGAGGATTGGAAATCCCTTATAACAAAAA
TTGACAAACTTACGGAATTGCTAAGTCCGCTAGACGACGTCTTGAAGCTT
TCAGGCTGGTTGAAAGTTGTTCGTGGTGTGTATGAGAAGCTACTGGTAAC
TTTCGAAGGTACGCCAGACAAGAATTGGTGGAGCAAAATCATTTCCAAGG
TTCCATATGGATCAGGTGGTCAAGAGCGATACAAAGGTTGGATCGTACAG
TTCCTAGAAGGTAAACCCAGTATCCAAACATTATCGAAAATGCAAAGTTC
CATAACGAGCGCACCGATGAAAATAACGTACGACCGAAATTGTGAAGGAG
AACAAAGTGCTCTTGTTGCAGgaccagtTGGTTTTACAATCGAAGAAGGA
AATAAAGATTCGAAAAATGTTCCAACAATTCGACCGTACATTGGATGGGC
TTTGTTGTTACCAAAGAATTCAGGATTTAGATGAAACTAACTGAATTAAC
TAGCTTGACATTTTTTGAGCTAACAAACACTCACATAcagaacttttttg
gaaaacctATTTTAGTGAGGAAAATCAaggttaaaaaaagtgtaaccTTT
TTATGATAACTCCAAATACAATATCTCCATTAAACCTGCACTTAATCGAA
TAATTCGGTTATTCGAGGGAAGAGCAATGACTTTCTGCGATTAAAACACT
CTTTTTCTGTTGACAATTCGTTCAAATTTATTCCTTCTTCGCCTACCTGA
GCCACA Run BLAST on NCBI transcript from alignment at scaffold_482:182958..185003- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068292 ID=TCONS_00068292|Name=TCONS_00068292|organism=Clytia hemisphaerica|type=transcript|length=2046bp|location=Sequence derived from alignment at scaffold_482:182958..185003- (Clytia hemisphaerica)
AACTGTCGCTTTGGGAACAAAAGATGAAGTTTATGCGACTGGTGATGCAG
GGTTGCTTGGAGCTGTTTTGGAAGCATATAATCATCATTGGAATCTCAAA
ATTTCTCCTGATGATTTTTGGATCCCTGTTGCAATTCGTGTTGGTAGGAA
AATCAATGATAATGCTAAGAAGGACAAAGTTAGAGATTTCTTTGTTGATT
TCGAAGGCAAAAAAGAGATTGTCATTGAATCAGGGGCCTCGACAATTTAT
CAAGTTGATTATATCTGGTTATTTGAACAATTTTCACAAAACATAAAAAA
TCTTATCAAAAAGCCAGAGTACAACGACCTGATGACTGCTAGTTTTTCAA
CATCAACTCCGGTCACAAAAATCGCCTCCCAAATCAATATAATGTCTTCA
CTTCAAGAATATTTTGAATTCACTTGTGAGCTGATGTGCGGTATCAAAGG
AGTCGATATGACTGGCAATAAAGAGGATTGGAAATCCCTTATAACAAAAA
TTGACAAACTTACGGAATTGCTAAGTCCGCTAGACGACGTCTTGAAGCTT
TCAGGCTGGTTGAAAGTTGTTCGTGGTGTGTATGAGAAGCTACTGGTAAC
TTTCGAAGGTACGCCAGACAAGAATTGGTGGAGCAAAATCATTTCCAAGG
TTCCATATGGATCAGGTGGTCAAGAGCGATACAAAGGTTGGATCGTACAG
TTCCTAGAAGGTAAGACAGACGAAAAGTACGGAAGATAAGATGCATGTAT
CCCCTTTTAGGATTTTGCTAGTCAGCTGTAGCCAAAGAGAGTGTCAGTCG
TGATAAATAGCCTCCATTTAACCTTGGGTAATGACTCTTATGCATTTCAT
ATAGAAGAAGCAGAGGCTTTTATTTGTACATCTTTCTTTGCAGGTAAACC
CAGTATCCAAACATTATCGAAAATGCAAAGTTCCATAACGAGCGCACCGA
TGAAAATAACGTACGACCGAAATTGTGAAGGAGAACAAAGTGCTCTTGTT
GCAGGTAAGTTTAGGAACAACGGCAGCCTAGATATATAGGCTGTAGACCT
TTTGATGTTTCTGGTTTAGCGTCTAAATCTTCCTAAAGCGATTTGCATTC
CAAAATAAGAAGGCAGCACATGCATACTTTGAATCTACCAACCCCGGGTT
TACAAGAATCTAAGTAGGCAAAGCTGTAAAAATACAACGTTCGAATAAAC
TCCTATAAATTTGTAGGTTTTTCATATGTTAGTTCGTCAACATAGCAAAT
TACAGATTGGATATCCGGTGTAGAGCAGTGGATATCAAAGTCTCACTCGA
TAAATTGCTATTCGCAAATTTTGAAGCAAGATATTCTCAGTATTAAAGTA
CTATTAAGTTATTTTGACTGATTCTAATATTGTTTTAATCAGTTTGGGAA
TTTCGTGCGAACGAACTTTGATCAAAAATAATTTCTGTGGAAACTGAACT
TACGTATCGGGCTAATGACAAACTTCATAGCTAGTTTAACAAAAGATTTT
TATTAAAATATTATCCAGTTTTCGATACTAGGACTCAGATTACCCTTTTT
GCTAGCAACTACACAAAGAAGTAATTTTGGCCAATATGTCCCTTAATCGC
GGGATAAGTTGATGACGGACTTTATTCTTGAAGAAAATATAAAAGTGTTA
ATTTTTTTCAGGACCAGTTGGTTTTACAATCGAAGAAGGAAATAAAGATT
CGAAAAATGTTCCAACAATTCGACCGTACATTGGATGGGCTTTGTTGTTA
CCAAAGAATTCAGGATTTAGATGAAACTAACTGAATTAACTAGCTTGACA
TTTTTTGAGCTAACAAACACTCACATACAGAACTTTTTTGGAAAACCTAT
TTTAGTGAGGAAAATCAAGGTTAAAAAAAGTGTAACCTTTTTATGATAAC
TCCAAATACAATATCTCCATTAAACCTGCACTTAATCGAATAATTCGGTT
ATTCGAGGGAAGAGCAATGACTTTCTGCGATTAAAACACTCTTTTTCTGT
TGACAATTCGTTCAAATTTATTCCTTCTTCGCCTACCTGAGCCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068292-exon-scaffold_482-1575043694:184294..185003 | TCONS_00068292-exon-scaffold_482-1575043694:184294..185003 | Clytia hemisphaerica | exon |
| TCONS_00068292-exon-scaffold_482-1575043694:184000..184110 | TCONS_00068292-exon-scaffold_482-1575043694:184000..184110 | Clytia hemisphaerica | exon |
| TCONS_00068292-exon-scaffold_482-1575043694:182958..183342 | TCONS_00068292-exon-scaffold_482-1575043694:182958..183342 | Clytia hemisphaerica | exon |
| TCONS_00068292-exon-scaffold_482-1510915933:184294..185003 | TCONS_00068292-exon-scaffold_482-1510915933:184294..185003 | Clytia hemisphaerica | exon |
| TCONS_00068292-exon-scaffold_482-1510915933:184000..184110 | TCONS_00068292-exon-scaffold_482-1510915933:184000..184110 | Clytia hemisphaerica | exon |
| TCONS_00068292-exon-scaffold_482-1510915933:182958..183342 | TCONS_00068292-exon-scaffold_482-1510915933:182958..183342 | Clytia hemisphaerica | exon |
| TCONS_00068292-exon-scaffold_482-1491911889:184294..185003 | TCONS_00068292-exon-scaffold_482-1491911889:184294..185003 | Clytia hemisphaerica | exon |
| TCONS_00068292-exon-scaffold_482-1491911889:184000..184110 | TCONS_00068292-exon-scaffold_482-1491911889:184000..184110 | Clytia hemisphaerica | exon |
| TCONS_00068292-exon-scaffold_482-1491911889:182958..183342 | TCONS_00068292-exon-scaffold_482-1491911889:182958..183342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:182958..185003 - |
Blast
The following BLAST results are available for this feature:
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