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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068262 ID=TCONS_00068262|Name=TCONS_00068262|organism=Clytia hemisphaerica|type=transcript|length=609bp
GAAGGAAATGACGTCAATCCAAAATGGTTGATTGGAAGTTATGTATAAAT
TTAATCGATATTTATATTgattaatattttctttatctttcCTAAGCAGT
CCGCAAAACACTTGTTTCAAGAACGGAAGattgttacaaaaatattttca
ctaaaacaagAAGATAGGGAAAAAGACCAAgacagaaaaagaagaaacgc
aACCACCACaaaagTAACATGAAGACTTTGTGGGTAGCAGTCCCACTGTC
ATCTATCCTTTTTGGTTTGATCATAATGAACGATGACGTCACCCACGCTA
AAACAATCGACACATGTGGTTGTAAAGAGTTGTTAATGCAATGTTTTGGC
GTTGTCGAAAAAGCAGAAAGCCGAGTGAAAAATTGTCTTGAAGCTCACAA
AAAATGTCAAGCTTCTTGTCTGGATAAAGGAACTGAAAGACGGCGAGAAA
TGAAATCCAGCCTTtgggaaaaagaaaaattatttgattCTTTTTGGAAT
GAGATTtaaagtttattttattttctataaatCAAAGAACGCAACTacgc
taaaaagaaaaatgtttcatGTTAAACTTATATTGTAGAAATATCAGCAT
GATATCTTT Run BLAST on NCBI transcript from alignment at scaffold_482:298673..303640+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068262 ID=TCONS_00068262|Name=TCONS_00068262|organism=Clytia hemisphaerica|type=transcript|length=4968bp|location=Sequence derived from alignment at scaffold_482:298673..303640+ (Clytia hemisphaerica)
GAAGGAAATGACGTCAATCCAAAATGGTTGATTGGAAGTTATGTATAAAT
TTAATCGATATTTATATTgattaatattttctttatctttcCTAAGCAGT
CCGCAAAACACTTGTTTCAAGAACGGAAGattgttacaaaaatattttca
ctaaaacaagAAGATAGGGAAAAAGACCAAgacagaaaaagaagaaacgc
aACCACCACaaaagtatttttaatttttactaTACATACTCAACACAGAA
TGCTTTTAAATTTGAGTTGTAAATGGCTAAAGGAAGCAGCCACTTTTTCA
AACAGAATTCGGAATACCCTTGGTATTTGTGATCAATTCCTTTCAGAAAG
CAGGAGATCGGGTTAAATAGATCAGAGATCTGCATAGCcggaaacttttt
ttaaaagatatgaAAATTGAAACCTAGAATTCTGCCGAGTTTAGGCTGAA
AGAAAGATAATGTTCTGGATGGAGAAGAAACTAAACTTTAATAAAACCAT
CATTTGAAAAGAGCTTATCTTGTGAACCGCTCCCAataaaagtttcattt
tataTGCTGGTACTTGGGCGAGTGAAGGGAACGGTCAGTCCCTCTCAGGT
AAGTTATAGCATGTcctaaaattaccataatttttaaatcgcattagccg
acagaaaacgaccaaacaaatgactgaacatgaggggtatgatgaagttt
ctaacctgctcaggcaaattaaggcctgtccagatttttcaaacttagcT
TAactttttatcaccgtttccacttgtcatagtATGTCACTTCaacatcg
aaagaagcgtatttgagtgtagatcactggaattgctgtgccataattaa
ttttttcacccaaaaaaagatattaggcaaaaaccaaaaaatgctgacgt
cagcaaaacttgttttttgaataactccagtttggcttatggtaaaaaca
tgaaatttggaccaaagttgcacactattaaaaggatcatttaaaaaaaa
tatttttaaaatttttctgacgtcagcactttattgcaaaatttcgtatt
ttgctgatttctcgtgtaacctaattttttttcgctgattttcgcgaaaa
accacaaaaactgattatgacggcataatcgatgacgtcataaaaactaa
aaattgaatttctcaaggatGGTTTATTCAATTGTCTTTTagctttcacc
aaagatgtatcataatcagtttttgcagattttcgcgAAAaccagcgaaa
aaacaattaggttacacatcaggttacaAACTAAATCATATTACCCTtta
tgttcagtcatttgtttggtcattttctgtcgactaatgcgatctagaAA
TTATggtatttttcagtttttgagacatgccataacttacccgagctGAA
AGGGTTGGaagaatcagaaaatcaaacttcagtccacTAAGGGTCAGAAA
GAATAaggaaactttcaaatttttgccccccagaaagatagaaattttgT
CTCAATAAGGGCAACAGAATTCACAGTTTTGCTCCTCCTTTTTTAGTTCC
GCTATAAGTGTCCGAGGGTAGAAGTAAATATTCTGTTGCTTTTTCTTGTA
AgaattattttataagaacatagaGCTCGATCAATTCCCGAAAGCTAAGA
CCAAATTAAGAAAAATCCTGACTCTTTTAACTcttaggaaaattttaaca
tttgaTCTCGaatcccccccaaaaaaaattaataggCAAGTCTCAAGCAA
AAATCAATGGTTCATATAAACTAAATGTATTTTAGTAGCCTTTTCTTTGG
GAAAGTAAAAatatcttttgttttctttaggTAACATGAAGACTTTGTGG
GTAGCAGTCCCACTATCATCTATCCTTTTTGGTTTGATCATAATGAACGA
TGACGTCACCCACGCTAAAACAATCGACACATGTGGTTGTAAAGAGTTGT
TAATGCAATGTTTTGGCGTTGTCGAAAAAGCAGAAAGCCGAGTGAAAAAT
TGTCTTGAAGCTCACAAAAAATGTCAAGCTTCTTGTCTGGATAAAGGAAC
TGAAAGACGGCGAGAAATGAAATCCAGCCTTtgggaaaaagaaaaattat
ttgattCTTTTTGGAATGAGATTtaaagtttattttattttctataaatC
AAAGAACGCAACTacgctaaaaagaaaaatgtttcgTGTTAAACTTATAT
TGTAGAAATATCAGCATGATATCTTTGACATAAAGGtcccgtaggaagca
ttttgatattgggggggggctgaagtttagtgacacacaaaaattttcaa
aatttgagctctagattgcttaaaaatacactcaaaacatgcacataaag
acaattatgacaaattaaaaaagaaaaactttgtatttttcaaaataacc
atttttgaaaaaattattggggggtcatagccccccccttgccccccccc
cagttgctacggcactgaggtgtcataaaaattgacacatttccaataca
aatttattgtttatgtcaaatatatcgtttaaaccgtttCAATAATTTTG
AGTCAGCACCGAACTCTTTAAAAAACGTACGCCTACCATAAAGTTTTCTC
AAGACGCTTCGTATCCCTGCTTTGTTTCAACCTTCTGTCAGCATTCTCCT
ATATAGACAGTGAAAAGCCTCTACAAAACTTCTAGCTAGAGAAGAAATTC
GAGTAACACGGAGGGTCTCAGCTCCTATGCAGGAAAAGGTTTTCGATGGT
ATATTAAAAGATTTGTTGGGCATTCTAATGGTTTTAAAAGGAAATGCATC
ACGTTTAACAAAAAGTTTGGTCTTGAATTGGGCAGAAAAAagctgttgag
gaggtccatcattttgtggctggaaatgctgtaatcccctggaattccag
gcaatttcaggtttaaacccctctggaattctgaattttagtaggattta
aaaggctaccccccccccatgaaattccagttatttttgacagatttttg
tatctccctatggaattccggcACTTATTAGACCTTACCCCTTTGGAACG
GAAatagacctcctcaacagggggtatacggttttttttctggaaaagcc
cattgtttGTTCTTAATTGCAATGTCAAGATCTAAAAAGGGGAACACTGT
TATTTCCctgttctttttttaattcaagttCCGAAATTTCAGCTTTTCAG
TGAAATGGACTTCATCAAGTTTTCTACAAGGTTCGTTACAATAGattgtt
tgaaaatattgtctTTTTCTTCTACTTCCCTGcaaatattttccttttaa
gAAATCAGCATTCTCGGATTTTGAAAGTGTTCCTTTCTCCAAAACAAGAA
AAGCATCAATACCAAAGAAATAGCCATGAATGCTGGGCaaagatataaaa
tatattcaaaggCGAATGCTGCAGTGAACAAAGCAACTGTTGCTCCTAAT
CTGGAGAACACCAAACGAACACTTTCAGAAAATGCTTGAGTATTGGATGG
AACCATTTGGGCCAAAACACTCATTGTAAATAGTTCGTCTACAATAACGA
CTGTTGACTTCATGAATGGATTGATAATCCATAATGTCACATTAAGCCAT
TCAATATCACCGACCAAACGAAAATACAAATAGATTCGATACATATAGCA
TGTCGCTATAAAACTTGAAATCCCAAGATTGACCAACTGATTCTTCGATG
GTGGTTTGAATACCANActattaaaaggatcatttaaaaaaaatattttt
aaaatttttctgacgtcagcactttattgcaaaatttcgtattttgctga
tttctcgtgtaacctaattttttttcgctgattttcgcgaaaaaccacaa
aaactgattatgacggcataatcgatgacgtcataaaaactaaaaattga
atttctcaaggatGGTTTATTCAATTGTCTTTTagctttcaccaaagatg
tatcataatcagtttttgcagattttcgcgAAAaccagcgaaaaaacaat
taggttacacatcaggttacaAACTAAATCATATTACCCTttatgttcag
tcatttgtttggtcattttctgtcgactaatgcgatctaaaaattatggt
attattcagtttttgagacatgccataacttacccgagctGAAAGGGTTG
gaataatcagaaaatcaaacttcagccCACTAAGGgtcaaaaaaaataag
gaaactttcaaatttttgccccccagaaagatagaaattttgtcccaata
agggtaACAAAATTCACAGTTTTGCTCCTCCTTTTTAGTTCCGCTATAAG
TGTACGAGGGTAGAAGTAAAtattttgttgctttttcttgtaagaattat
tttataagaacatagaGCTCGATCAATTCCCGAAAGCTAAGATCAAATTA
AGAAAAATCCTTTAACTCTTAGGAAAATTTGAGCATTTGAACTCGAATAC
CTCCCCCCCTCAAAAAAAACATTAACAGGCAAGTCTCAAGCAAAAATAAA
CTTTCTTATAAACTAAATGTATTTTAGTAGCCTTTTCTTTGGGAAAGTAA
AAatatcttttgttttctttaggTAACATGAAGACTTTGTGGGTAGCAGT
CCCACTGTCATCTATCCTTTTTGGTTTGATCATAATGAACGATGACGTCA
CCCACGCTAAAACAATCGACACATGTGGTTGTAAAGAGTTGTTAATGCAA
TGTTTTGGCGTTGTCGAAAAAGCAGAAAGCCGAGTGAAAAATTGTCTTGA
AGCTCACAAAAAATGTCAAGCTTCTTGTCTGGATAAAGGAACTGAAAGAC
GGCGAGAAATGAAATCCAGCCTTtgggaaaaagaaaaattatttgattCT
TTTTGGAATGAGATTtaaagtttattttattttctataaatCAAAGAACG
CAACTacgctaaaaagaaaaatgtttcatGTTAAACTTATATTGTAGAAA
TATCAGCATGATATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068262-exon-scaffold_482-1491911889:298673..298885 | TCONS_00068262-exon-scaffold_482-1491911889:298673..298885 | Clytia hemisphaerica | exon |
| TCONS_00068262-exon-scaffold_482-1510915933:298673..298885 | TCONS_00068262-exon-scaffold_482-1510915933:298673..298885 | Clytia hemisphaerica | exon |
| TCONS_00068262-exon-scaffold_482-1575043694:298673..298885 | TCONS_00068262-exon-scaffold_482-1575043694:298673..298885 | Clytia hemisphaerica | exon |
| TCONS_00068262-exon-scaffold_482-1491911889:303245..303640 | TCONS_00068262-exon-scaffold_482-1491911889:303245..303640 | Clytia hemisphaerica | exon |
| TCONS_00068262-exon-scaffold_482-1510915933:303245..303640 | TCONS_00068262-exon-scaffold_482-1510915933:303245..303640 | Clytia hemisphaerica | exon |
| TCONS_00068262-exon-scaffold_482-1575043694:303245..303640 | TCONS_00068262-exon-scaffold_482-1575043694:303245..303640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:298673..303640 + |
Blast
The following BLAST results are available for this feature:
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