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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068140 ID=TCONS_00068140|Name=TCONS_00068140|organism=Clytia hemisphaerica|type=transcript|length=3084bp
AATGGTTTAACATATGTTGAATGGTTATCTTTCAGTCACATCAAAGAACA
TTTACAACATCAGTATGGATTCACGGGAGAACAAGCTGACAAATACTTGA
AAGAATATGATGCACAAACACAGTTTTTTGTGATGCATGATTATGACAAC
AACACTAAATTAGACGGTTTAGAACTTTTGAAATCCATGACACATTTTCA
TGATGAACATGAGGAAGAAGgacaacaaaaagaaaataaagaggAAGaag
ACCAAACGGAGACGCTGGTCGAATTCGTTGACATGATTTTAAAAGACCAA
GACTTCAATAAGGACGGGTACATTGATTACCCAGAATACATTAGCTATTA
TACcaaattcgaaaataatgatTTAGATGCAGAGAAAAAGCCTGAAGATA
ATAAGGAAGCTACGACGGTGTAGGAAATTTACTTTGGTTTATAATTGGTT
TTGTTTTGCTTATTTCTTGTTTGGTATTTATGGTTGATATCTACTGGAGG
ATTTGTGTCAAAATTACGGGATAGTTGGCTGAGTAATGGACACACGGTAA
CTTTTTGAGTGTTTGATAAGATGGAAACTAATATACCTTTTCATATTTTA
CGCCACAATCATCACttacctcgtattcaaacaattgccgtggtgattat
gtccctttagacattaaaagatttttttatgaatagaaagtagttttaat
aaaatctgttgggagttaatcaccttggcaataatttcaaagcggtgcaa
gtgatgttcgtgacgtaattgaTAATTGCGATAATTTTTTCATCCCTGGT
CATATTATTGGCAAtgttttattgaattttatattttacaactCTTTGGA
ATAAAATGGACGGGTGTACAGTAAAACACGATGTTCCCGTTTTTTTTCGT
CTCTTAAAAGGTtgtgtttttacataagtgtttctgtttcatatcagaca
catatttcatatcaggacaatgTCTTGCTATAGTTAATATTAtgttgata
taagcaaaaaaaatgtttttcttttcctctttctgaccaattttgctcaa
tccaatgtgaaataGCTTGTggattaaaattgatgagtaagcaaacgata
tcactcttatttaaaaacaaaaccttaaacTTTTCTTGTGGATTGAAGCA
ACCGATATTGTTTATGGTGTGTTGGTACCAATAAATCGTGTGCTTGTAAA
TATTCTTGCTATTTAGAAAAAGGCTTGAAAAAGACacacaaaaaataagg
tgtttTAAGCTCTGTAACCCCAGTTTGCACACAACGTCGTTacgaacatt
agataaacgttgagaAAACGTCGTGTCAACTAGGGAGGCTATTGTCTACG
TGtcaacaataaaaaataattaataaaaaataaacaaataaacgtCTCTC
TCGcaataaagttttttgatacaatGTTTACATACACACGAAAGTTtagt
aattttttattattattatttttggaaaaaagggAATCAAGAAATGCGAT
TGGGTGAAAATCATATCTCATCTTGGCCAATCTAAACAAAGCCAATcttg
tattcatgatattcgtGCATAATACTTTATTCGGGAACACCCAAGTTTTT
GCAATCTTTTCTATAGCTTAAGTTTGCCACTACTAGTGGCAAAAATCGTG
GTGTTCCGTAGAAaacatgaatatcatgaataaagaaAATAGAAGACAGA
TAAACTtagtttttttgtcaattctaagATTTAATTACCTTTTTGAGATA
TGAAAGAATTAAAAGCTTTTAGATGCGGCCCTCATTTCGTTTGCTTAACG
CAGTAACATATTATTTTACGCCTGAAATCCTATACATTAAAATATTTCGT
GAgtttttttatcgtttttacactgttatttcaaaattttgtgtagCTTT
GGGAAATACATGATTGCTGTAACAGTTTTTCCTTATTTATACCCGGCTCC
TTGTCGAATTCTATTTCAACGAAGGATCTCTTCTTAAAAATtgagggaac
ttattttggagggaactaattttgacgagcggCAATTATCCTGAAATGTT
TAATTTTgacgagaacttattttggcgattgatgaatttttttaattttg
gcgggaactaattttggcgaaatgacagcataaatctgttctattttgcc
ttatttgaagctttttttgtgaacACAGTTGCCGCCAAAataataagttc
ccttaagtgATATATTTTGTACGTTTCGTGATTACAATAACACGAATCTC
CCTCACTTGCCCCTTATGTTTGCATCTAACATATATGTAGGGGTGTAGAA
actttttcctaatttttaaaaacattgttgCTCTACTTTATCTGTTTATA
CGTATTCCCGAAAAAAAATGTGATTCTATGCTCGTTTGCTGTTGTCTTTt
cattaatagaccttttcataaattacgtcacgagcaaagcttacctcgtt
ttcaaaatattgctatggtaattaaTTCCCAGAGGAGTTCACAAAAGTAA
CACTTGAATACTCGAATCattaaaattcactatggtAATAGTCTCAACAC
GGGAACAACACTCAAAGTacagtaatttatgaaaaggcctgtTCATGATA
CTCGTGAattaatgacgtaatgttacttACGGAAATAATCCGGTTTTCGC
CGGGAGTGGCAAATTTGAGCCAAACAAACGATAAGCAACCAGGAATTGTC
ACTACTTGCAAAAAAACGGgttctttccgtagaaaacatgtTGTCCTGAA
TATCATGAATGGTATTTCCTCCCATATGAATAGGGCTTTTtgaggctttt
ccagaaaagattTGAATATTGTGACTTTTAACCCCCGGACAACAGGTCTT
CACTTCAAAATCAACCCAAACAGAGCAATTTATTCTTCAGATAAgataaa
ttttgtagattttcacaATCCCCGGAGACAATATAAGTAACCTCCACCGT
GCACGGTAACTTTCTGGAAGAGTCGATAGCTTTAACATTCTCTATTTTTA
GTATGTTTTACTATACCTTTTTAGATATAGAAATTCTTCTTTAAATGATA
AATATTTGCAGAAATATATTTTATCGATTGGAAA Run BLAST on NCBI protein sequence of TCONS_00068140-protein >TCONS_00068140-protein ID=TCONS_00068140-protein|Name=TCONS_00068140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
NGLTYVEWLSFSHIKEHLQHQYGFTGEQADKYLKEYDAQTQFFVMHDYDN
NTKLDGLELLKSMTHFHDEHEEEGQQKENKEEEDQTETLVEFVDMILKDQ
DFNKDGYIDYPEYISYYTKFENNDLDAEKKPEDNKEATTV Run BLAST on NCBI transcript from alignment at scaffold_48:487438..492558+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068140 ID=TCONS_00068140|Name=TCONS_00068140|organism=Clytia hemisphaerica|type=transcript|length=5121bp|location=Sequence derived from alignment at scaffold_48:487438..492558+ (Clytia hemisphaerica)
AATGGTTTAACATATGTTGAATGGTTATCTTTCAGTCACATCAAAGAACA
TTTACAACATCAGTATGGATTCACGGGAGAACAAGCTGACAAATACTTGA
AAGTAAGTTTTCTCATTCCCATAGAATGTGTTGTCATATATAATATAACA
CTTCTTATCTGTTTAGAGAAGGTACATTTGAACCTGTAACAGCAAAGAAT
CTTTGGAAATTATCAAACTCTCCAGTGAAGCAATTCATtagatttttaaa
gatttatatAGTGTAAGATTTCACTATGAGAAATTTGAGACAATCAAATA
CTTGCAGAAAAGCCCAAGACGATATCATTAAGGTAATTTGTTTCCAAATA
AATAACTGCTTTGAATGTTGTTTAGTCATGTGAAAATTTGAAtcttgaaa
gaaatttttctcaaatttgtgATATTTCAGGAATATGATGCACAAACACA
GTTTTTTGTGATGCATGATTATGACAACAACACTAAATTAGACGGTTTAG
AACTTTTGAAATCCATGACACATTTTCATGATGAACATGAGGAAGAAGga
caacaaaaagaaaataaagaggAAGGTAAAGATGTGTAATGTTATCTTTT
ATAATAGATCTTATATGAAAGCAAATGAGAACACTTTTAAACATATTGTG
AATGTGCAATCAGTTCATGTAATGGGCTTTTACATTaaatatccatacag
ggggtggacaaacctttcaaggcaaaaaaaagattcttagaaatgtgtgt
agataccccctggaaaatttcaaaattagcaaaagaacccttggaaaact
ttttttcgtaCCTTAAAAGTGAGGGtagacgaactaaaatcagtctttca
cCCCCTgggaattttaaaatatttgtttttcctctggaaaaatggaaaaa
tactCTTTTATACcctcctggaaattcttctccgatcaccccctggaaat
cttcgtccaccccctgtatggatataaaatggaaaggAAATTCATGCTTT
GTATTCtagaaagaaaacaattttctgtATTTTAGAAGGAAAACCATTCT
GTGTATTTTAGAAGGAAAAGTATTCTCTGTGTTTTAGAAGGAAAGTcatt
ctctcttttttttaaagaagtttttttcactgtattttgaatcgaaaatt
attttttgtatgTTAAAAGGAAAATCTTTATTTAACTTGAAAGGAAaatt
gatgttgtttttttcaagaaaataattttttgtatgttagatggaaaata
atttttctgtattttggaaggaaaatcattcttttaattttggagggaaa
ataatttttctctactttaggcgtacaaactttcgcgagcagaagctttc
gcgattttcgcgaattttggccctttcttgcgaaagtaaatgtctttaaa
aattctaggaagggctaTTCGTGAAattttatgctcacgaaaaattctta
acaagatagaaaatctgtaaaacttcgaactttgaataaaatgtaacttt
tatgacactttagcctgctaaaagactaataagtcaaaggacaaatgttt
caagccaatccaagaagtgtttgtccctctaagccattttttcatgtgaa
aattctcaattttacgttttgattcgcgaaagtttatgcttccgaaaaat
atttttcagtaaatattgtaaatttcgcaatttttcgTCCTGGCGAAAGT
TTCCGCTTTATTTTGGAAGGAAAGTAATGTCTTTGTATTTTGGAAGGAGA
TTCATACTAAATGACTTATTAgaaggaaaatttattttctccttCTTGGA
GGAAAAACCATTCtctgtattcttgaaggaaaatcGCTCCCTGTATTTTG
GAAGGAAATTCGTTCCCTGTATTTTAGAAGGAAAATCGTTCCCTgtattt
tggaaagaaaaattgtTCCCTGTATTTTGGAAGGAAAACCGTTCCTTGTA
TTTTGGAAGGAAAATCGTTCCCTGTATTTTGGAAGGAAAATCGTTCCCTg
tattttggaaagaaaattcgTTCCCTgtattttggaaagaaaaattgtTC
CCTGTATTTTGGAAGGAAAACCGTTCCTtgtattttcgaaggaaaatcgC
TCCctttattgaaaggaaaattttttcctgcattttaaagtattttattc
CCTGTaattttagaagaaaaataatattaaatgaaaatcacGATAATTTA
AGAAAGTTATTGGGAATTTGGTGAAGCAGGAAAATAGCTCAACAACTCCA
CATATATcataattattttgttttttcatttcagaagACCAAACGGAGAC
GCTGGTCGAATTCGTTGACATGATTTTAAAAGACCAAGACTTCAATAAGG
ACGGGTACATTGATTACCCAGAATACATTAGCTATTATACcaaattcgaa
aataatgatTTAGATGCAGAGAAAAAGCCTGAAGATAATAAGGAAGCTAC
GACGGTGTAGGAAATTTACTTTGGTTTATAATTGGTTTTGTTTTGCTTAT
TTCTTGTTTGGTATTTATGGTTGATATCTACTGGAGGATTTGTGTCAAAA
TTACGGGATAGTTGGCTGAGTAATGGACACACGGTAACTTTTTGAGTGTT
TGATAAGATGGAAACTAATATACCTTTTCATATTTTACGCCACAATCATC
ACttacctcgtattcaaacaattgccgtggtgattatgtccctttagaca
ttaaaagatttttttatgaatagaaagtagttttaataaaatctgttggg
agttaatcaccttggcaataatttcaaagcggtgcaagtgatgttcgtga
cgtaattgaTAATTGCGATAATTTTTTCATCCCTGGTCATATTATTGGCA
AtgttttattgaattttatattttacaactCTTTGGAATAAAATGGACGG
GTGTACAGTAAAACACGATGTTCCCGTTTTTTTTCGTCTCTTAAAAGGTt
gtgtttttacataagtgtttctgtttcatatcagacacatatttcatatc
aggacaatgTCTTGCTATAGTTAATATTAtgttgatataagcaaaaaaaa
tgtttttcttttcctctttctgaccaattttgctcaatccaatgtgaaat
aGCTTGTggattaaaattgatgagtaagcaaacgatatcactcttattta
aaaacaaaaccttaaacTTTTCTTGTGGATTGAAGCAACCGATATTGTTT
ATGGTGTGTTGGTACCAATAAATCGTGTGCTTGTAAATATTCTTGCTATT
TAGAAAAAGGCTTGAAAAAGACacacaaaaaataaggtgtttTAAGCTCT
GTAACCCCAGTTTGCACACAACGTCGTTacgaacattagataaacgttga
gaAAACGTCGTGTCAACTAGGGAGGCTATTGTCTACGTGtcaacaataaa
aaataattaataaaaaataaacaaataaacgtCTCTCTCGcaataaagtt
ttttgatacaatGTTTACATACACACGAAAGTTtagtaattttttattat
tattatttttggaaaaaagggAATCAAGAAATGCGATTGGGTGAAAATCA
TATCTCATCTTGGCCAATCTAAACAAAGCCAATcttgtattcatgatatt
cgtGCATAATACTTTATTCGGGAACACCCAAGTTTTTGCAATCTTTTCTA
TAGCTTAAGTTTGCCACTACTAGTGGCAAAAATCGTGGTGTTCCGTAGAA
aacatgaatatcatgaataaagaaAATAGAAGACAGATAAACTtagtttt
tttgtcaattctaagATTTAATTACCTTTTTGAGATATGAAAGAATTAAA
AGCTTTTAGATGCGGCCCTCATTTCGTTTGCTTAACGCAGTAACATATTA
TTTTACGCCTGAAATCCTATACATTAAAATATTTCGTGAgtttttttatc
gtttttacactgttatttcaaaattttgtgtagCTTTGGGAAATACATGA
TTGCTGTAACAGTTTTTCCTTATTTATACCCGGCTCCTTGTCGAATTCTA
TTTCAACGAAGGATCTCTTCTTAAAAATtgagggaacttattttggaggg
aactaattttgacgagcggCAATTATCCTGAAATGTTTAATTTTgacgag
aacttattttggcgattgatgaatttttttaattttggcgggaactaatt
ttggcgaaatgacagcataaatctgttctattttgccttatttgaagctt
tttttgtgaacACAGTTGCCGCCAAAataataagttcccttaagtgATAT
ATTTTGTACGTTTCGTGATTACAATAACACGAATCTCCCTCACTTGCCCC
TTATGTTTGCATCTAACATATATGTAGGGGTGTAGAAactttttcctaat
ttttaaaaacattgttgCTCTACTTTATCTGTTTATACGTATTCCCGAAA
AAAAATGTGATTCTATGCTCGTTTGCTGTTGTCTTTtcattaatagacct
tttcataaattacgtcacgagcaaagcttacctcgttttcaaaatattgc
tatggtaattaaTTCCCAGAGGAGTTCACAAAAGTAACACTTGAATACTC
GAATCattaaaattcactatggtAATAGTCTCAACACGGGAACAACACTC
AAAGTacagtaatttatgaaaaggcctgtTCATGATACTCGTGAattaat
gacgtaatgttacttACGGAAATAATCCGGTTTTCGCCGGGAGTGGCAAA
TTTGAGCCAAACAAACGATAAGCAACCAGGAATTGTCACTACTTGCAAAA
AAACGGgttctttccgtagaaaacatgtTGTCCTGAATATCATGAATGGT
ATTTCCTCCCATATGAATAGGGCTTTTtgaggcttttccagaaaagattT
GAATATTGTGACTTTTAACCCCCGGACAACAGGTCTTCACTTCAAAATCA
ACCCAAACAGAGCAATTTATTCTTCAGATAAgataaattttgtagatttt
cacaATCCCCGGAGACAATATAAGTAACCTCCACCGTGCACGGTAACTTT
CTGGAAGAGTCGATAGCTTTAACATTCTCTATTTTTAGTATGTTTTACTA
TACCTTTTTAGATATAGAAATTCTTCTTTAAATGATAAATATTTGCAGAA
ATATATTTTATCGATTGGAAA Coding sequence (CDS) from alignment at scaffold_48:487438..492558+ >TCONS_00068140 ID=TCONS_00068140|Name=TCONS_00068140|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_48:487438..492558+ (Clytia hemisphaerica)
AATGGTTTAACATATGTTGAATGGTTATCTTTCAGTCACATCAAAGAACA
TTTACAACATCAGTATGGATTCACGGGAGAACAAGCTGACAAATACTTGA
AAGAATATGATGCACAAACACAGTTTTTTGTGATGCATGATTATGACAAC
AACACTAAATTAGACGGTTTAGAACTTTTGAAATCCATGACACATTTTCA
TGATGAACATGAGGAAGAAGgacaacaaaaagaaaataaagaggAAGaag
ACCAAACGGAGACGCTGGTCGAATTCGTTGACATGATTTTAAAAGACCAA
GACTTCAATAAGGACGGGTACATTGATTACCCAGAATACATTAGCTATTA
TACcaaattcgaaaataatgatTTAGATGCAGAGAAAAAGCCTGAAGATA
ATAAGGAAGCTACGACGGTGTAGAATGGTTTAACATATGTTGAATGGTTA
TCTTTCAGTCACATCAAAGAACATTTACAACATCAGTATGGATTCACGGG
AGAACAAGCTGACAAATACTTGAAAGAATATGATGCACAAACACAGTTTT
TTGTGATGCATGATTATGACAACAACACTAAATTAGACGGTTTAGAACTT
TTGAAATCCATGACACATTTTCATGATGAACATGAGGAAGAAGgacaaca
aaaagaaaataaagaggAAGaagACCAAACGGAGACGCTGGTCGAATTCG
TTGACATGATTTTAAAAGACCAAGACTTCAATAAGGACGGGTACATTGAT
TACCCAGAATACATTAGCTATTATACcaaattcgaaaataatgatTTAGA
TGCAGAGAAAAAGCCTGAAGATAATAAGGAAGCTACGACGGTGTAGAATG
GTTTAACATATGTTGAATGGTTATCTTTCAGTCACATCAAAGAACATTTA
CAACATCAGTATGGATTCACGGGAGAACAAGCTGACAAATACTTGAAAGA
ATATGATGCACAAACACAGTTTTTTGTGATGCATGATTATGACAACAACA
CTAAATTAGACGGTTTAGAACTTTTGAAATCCATGACACATTTTCATGAT
GAACATGAGGAAGAAGgacaacaaaaagaaaataaagaggAAGaagACCA
AACGGAGACGCTGGTCGAATTCGTTGACATGATTTTAAAAGACCAAGACT
TCAATAAGGACGGGTACATTGATTACCCAGAATACATTAGCTATTATACc
aaattcgaaaataatgatTTAGATGCAGAGAAAAAGCCTGAAGATAATAA
GGAAGCTACGACGGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068140-exon-scaffold_48-1491911889:487438..487539 | TCONS_00068140-exon-scaffold_48-1491911889:487438..487539 | Clytia hemisphaerica | exon |
| TCONS_00068140-exon-scaffold_48-1510915933:487438..487539 | TCONS_00068140-exon-scaffold_48-1510915933:487438..487539 | Clytia hemisphaerica | exon |
| TCONS_00068140-exon-scaffold_48-1575043694:487438..487539 | TCONS_00068140-exon-scaffold_48-1575043694:487438..487539 | Clytia hemisphaerica | exon |
| TCONS_00068140-exon-scaffold_48-1491911889:487868..488012 | TCONS_00068140-exon-scaffold_48-1491911889:487868..488012 | Clytia hemisphaerica | exon |
| TCONS_00068140-exon-scaffold_48-1510915933:487868..488012 | TCONS_00068140-exon-scaffold_48-1510915933:487868..488012 | Clytia hemisphaerica | exon |
| TCONS_00068140-exon-scaffold_48-1575043694:487868..488012 | TCONS_00068140-exon-scaffold_48-1575043694:487868..488012 | Clytia hemisphaerica | exon |
| TCONS_00068140-exon-scaffold_48-1491911889:489722..492558 | TCONS_00068140-exon-scaffold_48-1491911889:489722..492558 | Clytia hemisphaerica | exon |
| TCONS_00068140-exon-scaffold_48-1510915933:489722..492558 | TCONS_00068140-exon-scaffold_48-1510915933:489722..492558 | Clytia hemisphaerica | exon |
| TCONS_00068140-exon-scaffold_48-1575043694:489722..492558 | TCONS_00068140-exon-scaffold_48-1575043694:489722..492558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:487438..492558 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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