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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067860 ID=TCONS_00067860|Name=TCONS_00067860|organism=Clytia hemisphaerica|type=transcript|length=709bp
NNTTGAATCACAGAACACAACAGTTTATGGAGACGCATTCTTAGTATGGA
GAAGCATCTTCAAAGCAAATGAAATCCGAGTTGTTGACTGTATTATGAAG
AAGCGTCTCATCAATGTTGTAGATTCGAATAATGTAACAATTCAAAACAT
TGAATTACAGAACACTACAGTTTATGCACTTGCATTCTACATATCGAGAA
GCATCTTCAACGTAAATGAAATCCGAGTTGTTGACTGTGTTATGAAGGAC
CGTCTCATCAGTATTGAATATTtgaataatgtaacaattcAAAGCATTGA
ATTACAGAACACTACAGTTTATGAAGCGGCATTCTACTTATCGAAAAGCA
TCTTTAACGCAAATGAAATCCGAATTGTTGACTCTACATTCGATGCATTG
GCGTATTTAAGACTTAAAAGTAATATCACCATAAAATATATATCCGTGAA
CAAGACCAATGTAAGAAAAACATTTCTCAGTTCATGGGAATCCAGTAAAT
CCATGATTACAAATGTAACGATTTACGAAAGCAGGATTATAGGTAGAATG
TTTTACCTTGCAGAAAAAAGTCATGTTATATTTAAAAATGCAACAATATT
TCACACTGAAATAGGTCAAGAAATTTTTTACATGTATGAAAGCACGGTAA
CACTAGAGCAATTCATCATTATACATTGCAATATTTTTGGCGCTTTTAAA
ACAATTGAG Run BLAST on NCBI protein sequence of TCONS_00067860-protein >TCONS_00067860-protein ID=TCONS_00067860-protein|Name=TCONS_00067860-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
XESQNTTVYGDAFLVWRSIFKANEIRVVDCIMKKRLINVVDSNNVTIQNI
ELQNTTVYALAFYISRSIFNVNEIRVVDCVMKDRLISIEYLNNVTIQSIE
LQNTTVYEAAFYLSKSIFNANEIRIVDSTFDALAYLRLKSNITIKYISVN
KTNVRKTFLSSWESSKSMITNVTIYESRIIGRMFYLAEKSHVIFKNATIF
HTEIGQEIFYMYESTVTLEQFIIIHCNIFGAFKTIE Run BLAST on NCBI transcript from alignment at scaffold_476:402800..403508 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067860 ID=TCONS_00067860|Name=TCONS_00067860|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at scaffold_476:402800..403508 (Clytia hemisphaerica)
CTCAATTGTTTTAAAAGCGCCAAAAATATTGCAATGTATAATGATGAATT
GCTCTAGTGTTACCGTGCTTTCATACATGTAAAAAATTTCTTGACCTATT
TCAGTGTGAAATATTGTTGCATTTTTAAATATAACATGACTTTTTTCTGC
AAGGTAAAACATTCTACCTATAATCCTGCTTTCGTAAATCGTTACATTTG
TAATCATGGATTTACTGGATTCCCATGAACTGAGAAATGTTTTTCTTACA
TTGGTCTTGTTCACGGATATATATTTTATGGTGATATTACTTTTAAGTCT
TAAATACGCCAATGCATCGAATGTAGAGTCAACAATTCGGATTTCATTTG
CGTTAAAGATGCTTTTCGATAAGTAGAATGCCGCTTCATAAACTGTAGTG
TTCTGTAATTCAATGCTTTgaattgttacattattcaAATATTCAATACT
GATGAGACGGTCCTTCATAACACAGTCAACAACTCGGATTTCATTTACGT
TGAAGATGCTTCTCGATATGTAGAATGCAAGTGCATAAACTGTAGTGTTC
TGTAATTCAATGTTTTGAATTGTTACATTATTCGAATCTACAACATTGAT
GAGACGCTTCTTCATAATACAGTCAACAACTCGGATTTCATTTGCTTTGA
AGATGCTTCTCCATACTAAGAATGCGTCTCCATAAACTGTTGTGTTCTGT
GATTCAANN Coding sequence (CDS) from alignment at scaffold_476:402800..403508 >TCONS_00067860 ID=TCONS_00067860|Name=TCONS_00067860|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_476:402800..403508 (Clytia hemisphaerica)
CTCAATTGTTTTAAAAGCGCCAAAAATATTGCAATGTATAATGATGAATT
GCTCTAGTGTTACCGTGCTTTCATACATGTAAAAAATTTCTTGACCTATT
TCAGTGTGAAATATTGTTGCATTTTTAAATATAACATGACTTTTTTCTGC
AAGGTAAAACATTCTACCTATAATCCTGCTTTCGTAAATCGTTACATTTG
TAATCATGGATTTACTGGATTCCCATGAACTGAGAAATGTTTTTCTTACA
TTGGTCTTGTTCACGGATATATATTTTATGGTGATATTACTTTTAAGTCT
TAAATACGCCAATGCATCGAATGTAGAGTCAACAATTCGGATTTCATTTG
CGTTAAAGATGCTTTTCGATAAGTAGAATGCCGCTTCATAAACTGTAGTG
TTCTGTAATTCAATGCTTTgaattgttacattattcaAATATTCAATACT
GATGAGACGGTCCTTCATAACACAGTCAACAACTCGGATTTCATTTACGT
TGAAGATGCTTCTCGATATGTAGAATGCAAGTGCATAAACTGTAGTGTTC
TGTAATTCAATGTTTTGAATTGTTACATTATTCGAATCTACAACATTGAT
GAGACGCTTCTTCATAATACAGTCAACAACTCGGATTTCATTTGCTTTGA
AGATGCTTCTCCATACTAAGAATGCGTCTCCATAAACTGTTGTGTTCTGT
GATTCAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067860-exon-scaffold_476-1491911889:402800..403508 | TCONS_00067860-exon-scaffold_476-1491911889:402800..403508 | Clytia hemisphaerica | exon |
| TCONS_00067860-exon-scaffold_476-1510915933:402800..403508 | TCONS_00067860-exon-scaffold_476-1510915933:402800..403508 | Clytia hemisphaerica | exon |
| TCONS_00067860-exon-scaffold_476-1575043694:402800..403508 | TCONS_00067860-exon-scaffold_476-1575043694:402800..403508 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:402800..403508 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012334 | Pectin_lyas_fold |
| IPR011050 | Pectin_lyase_fold/virulence |
Blast
The following BLAST results are available for this feature:
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