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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067691 ID=TCONS_00067691|Name=TCONS_00067691|organism=Clytia hemisphaerica|type=transcript|length=1968bp
TAATTAATCAATGAAGAAATTGAACAGTGTCAACATACATACAAAGTAAA
GGGGATTTTTTTATAGATAGATATCACATCAGTATCATTTTATTGCAATT
AACGTAACTCGAGTACTTtcgaaagagagagagagaaaactatcaaaatt
ttattgaagaaaaattgaaaacaacagACTAAATGTAACGGACTTGGAAA
ACTCTACATTACTGTATCTTAACTGGAAAAGATTTGAACACTTGTAAAAG
TTTTGCATTGTCATCCACTACAAAAAGAGGGCGTGCGAATCATTattaaa
aatcttcagaaataaAATACAGAGAAGAATCAACAGTAACGATGATGTCT
CAACCTATGTTAGCGACGACCAGTCATCCACAACACTTACACCACCCACA
ACAAACACAACAGcagcaacagcaacaacaacagcagcaaCGTGATAACA
ACGACATTGAAGATTTTCTTAACATTCTCATTgacgataacacacacaaa
cacAACAACAATAAATCTCCACAACAATTATCCCCATGCAACCAACAACC
ATCACCGTCATTCAACATCccacaacaacagcaacaacgcCAGCCACAAC
ATTTCGGTGGTGGCTCACCCATAAATAACGGACAAATGCAATTAGCCACA
AGTCCACCAACGAATGTCCCAGAGGTGAAAATCAAATGCGAAGATAACAG
CGCCTCAGATTATCCACTCAGTGATGGAGATGGTTTTATTGACGATATGT
CTCCTTTCCATAGCGGTGTCTCTTCTCCTGGGAGCTCTTGTAGTGCAATG
AGTGGACCAGGCAGTCCCATCTTAATGGACTCAAACAGCCAACCACCTTT
TAATCAGAATTACTTAACACCTGAAAGTGCTTTCTACATGCAACCAGGTA
GTCCAACACACAGTGGAGGAGACAGTGCTGGCTCCTCGTATAAATACGAC
CCGAGACCGTTGGGACGAAAGAAGCGCCGTACCTTGGTACCAGATGATAA
GAAAAATACAGAGTATTGGGAAAAACGAAAACGTAATAATTTGGCCGCCC
GTCGATCACGTGAAGAGAGGCGTACAAAAGAGTTGCAAacttttgaaaca
atgaaacatcTACAACAAGAGAATAATGCTTTAAAACAAACAGTTAAAAT
GTTGATGGAAAgtcaaaatgaacttcaaaaagaAATCTTCAGTTTGAGAC
ATTGTTTAGAAGTCTCACAGGCTATGCTGAATAATAAACAAATCCCACAG
CCTAATAACCACCACCCTAATCCATTGTAAACATACTGCTGATTACACAG
ATGATGGTATAGCCTTTATGGTGGCTGAGTTTCAGGGGGAAATATGGAGT
TATAGACCTAGTGAGTATAGGACTATTTAATCTTAGATGGACATATGCAG
GCCACATGTATAAATCTCTTAAAAATTGTAAGTAAAAAACCCATTCTTCT
TTTATATGAAGCTTGTACAGGATTTTTAAAGCAGTTTGTCAAAATgggtt
ttaactttttttaaatcgtaTGTCTTAAATACTCACATCATACTACACCA
ATTAGCGAGAAAAATCTGAACCCTTTTCGGCATTCCTTAATGATTAGTAC
ATAGTGTATATATTTAAtgagcttttaaaaaaaaaaaaattagccttTCT
ATTGTTTTCCATGAAAACATTCCGAATTCCGCATCGGATTAGACTAATTA
CCGGCTTtcaaaaaatcgggaaaatcccGGGTTGTcctttttattgtttt
agatTTCTTCTTTCGGCATTCTTTTctgtttcaattttgttttttccttt
ctatattgttttaaatttcttatttttatcaaatatatgATATGTTTTAG
TTTTGTTAAGTTTTCTGAAATTATTTTCGATATTGATTTTAATTTAGGGT
ATAAAGAATTTTATATAAATATTAGACAGTAAAAAGTTTTATATGACAAT
ATTATACATTTTAAACTG Run BLAST on NCBI protein sequence of TCONS_00067691-protein >TCONS_00067691-protein ID=TCONS_00067691-protein|Name=TCONS_00067691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MMSQPMLATTSHPQHLHHPQQTQQQQQQQQQQQRDNNDIEDFLNILIDDN
THKHNNNKSPQQLSPCNQQPSPSFNIPQQQQQRQPQHFGGGSPINNGQMQ
LATSPPTNVPEVKIKCEDNSASDYPLSDGDGFIDDMSPFHSGVSSPGSSC
SAMSGPGSPILMDSNSQPPFNQNYLTPESAFYMQPGSPTHSGGDSAGSSY
KYDPRPLGRKKRRTLVPDDKKNTEYWEKRKRNNLAARRSREERRTKELQT
FETMKHLQQENNALKQTVKMLMESQNELQKEIFSLRHCLEVSQAMLNNKQ
IPQPNNHHPNPL Run BLAST on NCBI transcript from alignment at scaffold_472:310533..313483- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067691 ID=TCONS_00067691|Name=TCONS_00067691|organism=Clytia hemisphaerica|type=transcript|length=2951bp|location=Sequence derived from alignment at scaffold_472:310533..313483- (Clytia hemisphaerica)
TAATTAATCAATGAAGAAATTGAACAGTGTCAACATACATACAAAGTAAA
GGGGATTTTTTTATAGATAGATATCACATCAGTATCATTTTATTGCAATT
AACGTAACTCGAGTACTTTCGAAAGAGAGAGAGAGAAAACTATCAAAATT
TTATTGAAGAAAAATTGAAAACAACAGACTAAATGTAACGGACTTGGAAA
ACTCTACATTACTGTATCTTAACTGGAAAAGATTTGAACACTTGTAAAAG
TTTTGCATTGTCATCCACTACAAAAAGAGGGCGTGCGAATCATTATTAAA
AATCTTCAGAAATAAAATACAGAGAAGAATCAACAGTAACGATGATGTCT
CAACCTATGTTAGCGACGACCAGTCATCCACAACACTTACACCACCCACA
ACAAACACAACAGCAGCAACAGCAACAACAACAGCAGCAACGTGATAACA
ACGACATTGAAGATTTTCTTAACATTCTCATTNTGACGTGTCATTACGTC
ATCAACATGAACAAAAGGACAGACCAAGAAAGCGGAACTAAAAATGTTGG
CAACTAATTCTTTTTTACTACGTCGTGTTTGACATTTCAAAGAAAACCAT
ACTTAAATTATGATGAGCCATAGAGAAGTAAATGGGAAATTAAAAAAACA
AAGAATAAAGAAAAATGAAAATTGAAACAATATCTATGATTTGATGAATA
AACAAACAGCTAACCCAAAAGAGCGGTATAGGAAACTAACGTCGTCGGGT
TTTTTCAATACGGCTTAACTGTAAACGACGGAAAAATGTCAAGAAATTAT
TTCTCCTTTTAATGCTAAAAGCCAAAACTCGATCATCCAAAAACAATTCC
ACCATACTTGACTAATCGAGGTACAACAACAGCAATTTTGAAACAATAGC
AATTAGTAATTAAAGAGATCCGGTCCTCTATTATCAAAGAAGCTCATTAA
GGTATCATTTTCAGAAAATGTTCTTTTTGTAATTAATTAATCAATGAAGA
AATTGAACAGTGTCAACATACATACAAAGTAAAGGGGATTTTTTTATAGA
TAGATATCACATCAGTATCATTTTATTGCAATTAACGTAACTCGAGTACT
TTCGAAAGAGAGAGAGAGAAAACTATCAAAATTTTATTGAAGAAAAATTG
AAAACAACAGACTAAATGTAACGGACTTGGAAAACTCTACATTACTGTAT
CTTAACTGGAAAAGATTTGAACACTTGTAAAAGTTTTGCATTGTCATCCA
CTACAAAAAGAGGGCGTGCGAATCATTATTAAAAATCTTCAGAAATAAAA
TACAGAGAAGAATCAACAGTAACGATGATGTCTCAACCTATGTTAGCGAC
GACCAGTCATCCACAACACTTACACCACCCACAACAAACACAACAGCAGC
AACAGCAACAACAACAACAGCAACGTGATAACAACGACATTGAAGATTTT
CTTAACATTCTCATTGACGATAACACACACAAACACAACAACAATAAATC
TCCACAACAATTATCCCCATGCAACCAACAACCATCACCGTCATTCAACA
TCCCACAACAACAGCAACAACGCCAGCCACAACATTTCGGTGGTGGCTCA
CCCATAAATAACGGACAAATGCAATTAGCCACAAGTCCACCAACGAATGT
CCCAGAGGTGAAAATCAAATGCGAAGATAACAGCGCCTCAGATTATCCAC
TCAGTGATGGAGATGGTTTTATTGACGATATGTCTCCTTTCCATAGCGGT
GTCTCTTCTCCTGGGAGCTCTTGTAGTGCAATGAGTGGACCAGGCAGTCC
CATCTTAATGGACTCAAACAGCCAACCACCTTTTAATCAGAATTACTTAA
CACCTGAAAGTGCTTTCTACATGCAACCAGGTAGTCCAACACACAGTGGA
GGAGACAGTGCTGGCTCCTCGTATAAATACGACCCGAGACCGTTGGGACG
AAAGAAGCGCCGTACCTTGGTACCAGATGATAAGAAAAATACAGAGTATT
GGGAAAAACGAAAACGTAATAATTTGGCCGCCCGTCGATCACGTGAAGAG
AGGCGTACAAAAGAGTTGCAAACTTTTGAAACAATGAAACATCTACAACA
AGAGAATAATGCTTTAAAACAAACAGTTAAAATGTTGATGGAAAGTCAAA
ATGAACTTCAAAAAGAAATCTTCAGTTTGAGACATTGTTTAGAAGTCTCA
CAGGCTATGCTGAATAATAAACAAATCCCACAGCCTAATAACCACCACCC
TAATCCATTGTAAACATACTGCTGATTACACAGATGATGGTATAGCCTTT
ATGGTGGCTGAGTTTCAGGGGGAAATATGGAGTTATAGACCTAGTGAGTA
TAGGACTATTTAATCTTAGATGGACATATGCAGGCCACATGTATAAATCT
CTTAAAAATTGTAAGTAAAAAACCCATTCTTCTTTTATATGAAGCTTGTA
CAGGATTTTTAAAGCAGTTTGTCAAAATGGGTTTTAACTTTTTTTAAATC
GTATGTCTTAAATACTCACATCATACTACACCAATTAGCGAGAAAAATCT
GAACCCTTTTCGGCATTCCTTAATGATTAGTACATAGTGTATATATTTAA
TGAGCTTTTAAAAAAAAAAAAATTAGCCTTTCTATTGTTTTCCATGAAAA
CATTCCGAATTCCGCATCGGATTAGACTAATTACCGGCTTTCAAAAAATC
GGGAAAATCCCGGGTTGTCCTTTTTATTGTTTTAGATTTCTTCTTTCGGC
ATTCTTTTCTGTTTCAATTTTGTTTTTTCCTTTCTATATTGTTTTAAATT
TCTTATTTTTATCAAATATATGATATGTTTTAGTTTTGTTAAGTTTTCTG
AAATTATTTTCGATATTGATTTTAATTTAGGGTATAAAGAATTTTATATA
AATATTAGACAGTAAAAAGTTTTATATGACAATATTATACATTTTAAACT
G Coding sequence (CDS) from alignment at scaffold_472:310533..313483- >TCONS_00067691 ID=TCONS_00067691|Name=TCONS_00067691|organism=Clytia hemisphaerica|type=CDS|length=1878bp|location=Sequence derived from alignment at scaffold_472:310533..313483- (Clytia hemisphaerica)
ATTCTCATTGACGATAACACACACAAACACAACAACAATAAATCTCCACA
ACAATTATCCCCATGCAACCAACAACCATCACCGTCATTCAACATCCCAC
AACAACAGCAACAACGCCAGCCACAACATTTCGGTGGTGGCTCACCCATA
AATAACGGACAAATGCAATTAGCCACAAGTCCACCAACGAATGTCCCAGA
GGTGAAAATCAAATGCGAAGATAACAGCGCCTCAGATTATCCACTCAGTG
ATGGAGATGGTTTTATTGACGATATGTCTCCTTTCCATAGCGGTGTCTCT
TCTCCTGGGAGCTCTTGTAGTGCAATGAGTGGACCAGGCAGTCCCATCTT
AATGGACTCAAACAGCCAACCACCTTTTAATCAGAATTACTTAACACCTG
AAAGTGCTTTCTACATGCAACCAGGTAGTCCAACACACAGTGGAGGAGAC
AGTGCTGGCTCCTCGTATAAATACGACCCGAGACCGTTGGGACGAAAGAA
GCGCCGTACCTTGGTACCAGATGATAAGAAAAATACAGAGTATTGGGAAA
AACGAAAACGTAATAATTTGGCCGCCCGTCGATCACGTGAAGAGAGGCGT
ACAAAAGAGTTGCAAACTTTTGAAACAATGAAACATCTACAACAAGAGAA
TAATGCTTTAAAACAAACAGTTAAAATGTTGATGGAAAGTCAAAATGAAC
TTCAAAAAGAAATCTTCAGTTTGAGACATTGTTTAGAAGTCTCACAGGCT
ATGCTGAATAATAAACAAATCCCACAGCCTAATAACCACCACCCTAATCC
ATTGTAAATGATGTCTCAACCTATGTTAGCGACGACCAGTCATCCACAAC
ACTTACACCACCCACAACAAACACAACAGCAGCAACAGCAACAACAACAG
CAGCAACGTGATAACAACGACATTGAAGATTTTCTTAACATTCTCATTGA
CGATAACACACACAAACACAACAACAATAAATCTCCACAACAATTATCCC
CATGCAACCAACAACCATCACCGTCATTCAACATCCCACAACAACAGCAA
CAACGCCAGCCACAACATTTCGGTGGTGGCTCACCCATAAATAACGGACA
AATGCAATTAGCCACAAGTCCACCAACGAATGTCCCAGAGGTGAAAATCA
AATGCGAAGATAACAGCGCCTCAGATTATCCACTCAGTGATGGAGATGGT
TTTATTGACGATATGTCTCCTTTCCATAGCGGTGTCTCTTCTCCTGGGAG
CTCTTGTAGTGCAATGAGTGGACCAGGCAGTCCCATCTTAATGGACTCAA
ACAGCCAACCACCTTTTAATCAGAATTACTTAACACCTGAAAGTGCTTTC
TACATGCAACCAGGTAGTCCAACACACAGTGGAGGAGACAGTGCTGGCTC
CTCGTATAAATACGACCCGAGACCGTTGGGACGAAAGAAGCGCCGTACCT
TGGTACCAGATGATAAGAAAAATACAGAGTATTGGGAAAAACGAAAACGT
AATAATTTGGCCGCCCGTCGATCACGTGAAGAGAGGCGTACAAAAGAGTT
GCAAACTTTTGAAACAATGAAACATCTACAACAAGAGAATAATGCTTTAA
AACAAACAGTTAAAATGTTGATGGAAAGTCAAAATGAACTTCAAAAAGAA
ATCTTCAGTTTGAGACATTGTTTAGAAGTCTCACAGGCTATGCTGAATAA
TAAACAAATCCCACAGCCTAATAACCACCACCCTAATCCATTGTAAATGA
TGTCTCAACCTATGTTAGCGACGACCAGTCATCCACAACACTTACACCAC
CCACAACAAACACAACAGCAGCAACAGCAACAACAACAGCAGCAACGTGA
TAACAACGACATTGAAGATTTTCTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067691-exon-scaffold_472-1575043694:313011..313483 | TCONS_00067691-exon-scaffold_472-1575043694:313011..313483 | Clytia hemisphaerica | exon |
| TCONS_00067691-exon-scaffold_472-1575043694:310533..312027 | TCONS_00067691-exon-scaffold_472-1575043694:310533..312027 | Clytia hemisphaerica | exon |
| TCONS_00067691-exon-scaffold_472-1510915933:313011..313483 | TCONS_00067691-exon-scaffold_472-1510915933:313011..313483 | Clytia hemisphaerica | exon |
| TCONS_00067691-exon-scaffold_472-1510915933:310533..312027 | TCONS_00067691-exon-scaffold_472-1510915933:310533..312027 | Clytia hemisphaerica | exon |
| TCONS_00067691-exon-scaffold_472-1491911889:313011..313483 | TCONS_00067691-exon-scaffold_472-1491911889:313011..313483 | Clytia hemisphaerica | exon |
| TCONS_00067691-exon-scaffold_472-1491911889:310533..312027 | TCONS_00067691-exon-scaffold_472-1491911889:310533..312027 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_472 | supercontig | scaffold_472:310533..313483 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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