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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067442 ID=TCONS_00067442|Name=TCONS_00067442|organism=Clytia hemisphaerica|type=transcript|length=2899bp
tgtgtgtaatttatcgatgttgatggcttgttgattctttaaagaaaaag
ataacaggtatagctttttctaatcctggaatatcgaggttccagctaca
ctgactTGTTCTTGACTGCTGGAACACCGAAGGATTCTGGAACACCGGAA
GATTCGGAAGCACTTCCTGTGCTCTCTGGAGCATGATTTTTGGCAAATTG
GTCTGCACTGCACCGGGAACTCCgaaatgttcttgtaaaatacCCACTAT
AAGTAGATTgtgcagttagtcacactagcgtcccgccaaaatgcatatca
aagattaatgctgcgaaagcgcgcTGACTAGCAAGCAAAAAAATAcggcg
caaaacttctaaagggatttatgaaaaaataacccggcgctttttaaatg
aaattaacattttcaaaactatgagaaattgcataaaatttgagccatag
atgagaAAATTTaagagccaagccaaccttgaaaactaatttgaagatca
acttcccaagaaaaagatctatgaGGGAGACaaaacccacctagatccgc
gtaCTGTGCCGGATAGGCtacttcccggaaattttgccggacctcaaaca
ctgacccatttacatgtgcagaattatttttactttagtgtataaacaag
gccttaaaaatcgaagcgctgcctcgggaattgaatgacaaaatttggtt
ggttgatattctggctaCTGCACATTTGCAATCtatcattttgtctcatt
ttaagttttcaagttttaattaattgtcttgggaacttgaactttattca
ggtaactctcatccttgttgtttcaaatacatcatgtatttcttaaaaac
tcattattttcttcttttcctgggccaagctatccaaaacaCTCAATGTG
AATAAAAAATAACAGCTTCGCTAACAAAATGTGCGCCTCGAGTAAAAGAC
ATGGTTCCAATCACGTCCGCGAACGGGACAGGCATTTTTTTACGCAGTGG
GCGGCTACAAGTGCGTTTTAGAAATTCGCGTTTTAGACGCGTCTCGAACG
CGTTTGAATTTTCGCGCATGTCATTTTGATTTCGAAAGTGAAAGCAGCTC
GATTTCATGGTGGAATTCAACTTCGTTGGAGATGGGAAGCACCAGgtagg
aataatgaataatgaataatgaaattttgccgcatcaaatattttttgca
acgcgacggtaaacagaacatcaaattcccatcgcctAAATATGTTTAGT
GTTCTATAgaatgatcggtattttttttaaattctatgtttagatttttc
tacccagccccgttgttATGAACGCGcgtcctgttgctaagacctttgct
tgaaatcgaaagcgaaaccaaaatATTATAGCACACACTGCCGCACGCGT
AATATCGATTAATTGAAAGGAAGTCCTGACTGCATCTGGTGGTGGTCAAA
ACAGGCATCTGATACCTAGTTCTATTAATTAAGCACATAATACGCTAAcg
tacattatcatgatataATAAGCACCTAAtcaggaggggtgtcgacatta
gaccaacttatggtactAGGGCCCTATAATTcattattatccgacgcgca
taaatagcgacatttgattggcttctttgctgtccaatattttcaaatat
atagcttccatggaggctacatatttcaaaaattgacgtcacgcaacgag
ttcaatgacaattgagcatcttctttttgacgttacgtcacaaaataaaa
ataagacttttgaataaaaagctaCCAAGAAACCAGCTTTACGGtcttat
aaattggaattatgcttgaaaacgagaaatattttagcggataataaacc
atttatttgtaCAAAGTGGAATCCAATATTTTTCTGCTTAATATTTGCCC
AGCAAAAAGGCATTTGCTATATATGCCCTGAACTGTATGAAAGCAAATAT
GAAATTCTACTAgtaatttagaaaatattacTCAAATGGAAAAGTTTATG
GCATTAGCAGCTTTATGGTTTGGGAAGAAAGCAACAGTTTATGCCATTGG
AAGGAGTTATGGTTTTTCAAGAGTATACAGAAGATTTGTTGAATTCAATC
ATAAGTCAACAAATAATAAAGACTCGTTGAGGAATCGTTCCAATCTGGTA
AAAGGCTTTTTCCGGTTGCCAAACAAAATTGCTGAGAGATTCAAACATCC
TGATGAGCATCCACCTTATCCACCTTGATTTGATAACACTCTGATagcaa
aattatgttttgtcaCAATGAGAAGGGATACATTGTTTGAAGTTCATTGT
CTTGGTTTGGAAGGATTTAAAaccaaaattgcattttttatatctttttt
gaaaGGGAATTATTAATTAATGTGAGAGGTATATTGGACAGAGGATGGAG
ACAAAAATATCATTAGATGCTAgaatttccaacatgtttcaGCCCTAACA
CTGGCTGATACATCAGAAAGTTTTATCTTCAAGTGGCTGCACTTTTACCA
TCTACCTGCAATGCTAATTAAAGCTGGTTTGAAACATTTTAACACAGTTc
gaatttaattttgtattaaaTTTATTATCAAATAGTTAAATAATCTCCAG
TCCATAACTTGTAACACTCTCACTATAATTAGTAATTGCCTTTAGTAATA
TCTTAAGGATCACATAATTAATTCAGATTTGAGCCTTAAATTCATTCTAA
GAAGCGTCACATTGATGCAAAAGTTTATATACAGACATGAAGAGCAACTT
TTAAAGCATTGTTGAAGTAATGATTTGTTATTAAATTATTATAcatattt
tgtacaattttaaacaaagagtatttttaatacattttattgcattgaat
gaaaaaaacttaaTAAATGTATTTGATTTAAAATACCTTTTCATAACTT Run BLAST on NCBI transcript from alignment at scaffold_47:177747..182008+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067442 ID=TCONS_00067442|Name=TCONS_00067442|organism=Clytia hemisphaerica|type=transcript|length=4262bp|location=Sequence derived from alignment at scaffold_47:177747..182008+ (Clytia hemisphaerica)
tgtgtgtaatttatcgatgttgatggcttgttgattctttaaagaaaaag
ataacaggtatagctttttctaatcctggaatatcgaggttccagctaca
ctgactTGTTCTTGACTGCTGGAACACCGAAGGATTCTGGAACACCGGAA
GATTCGGAAGCACTTCCTGTGCTCTCTGGAGCATGATTTTTGGCAAATTG
GTCTGCACTGCACCGGGAACTCCgaaatgttcttgtaaaatacCCACTAT
AAGTAGATTgtgcagttagtcacactagcgtcccgccaaaatgcatatca
aagattaatgctgcgaaagcgcgcTGACTAGCAAGCAAAAAAATAcggcg
caaaacttctaaagggatttatgaaaaaataacccggcgctttttaaatg
aaattaacattttcaaaactatgagaaattgcataaaatttgagccatag
atgagaAAATTTaagagccaagccaaccttgaaaactaatttgaagatca
acttcccaagaaaaagatctatgaGGGAGACaaaacccacctagatccgc
gtaCTGTGCCGGATAGGCtacttcccggaaattttgccggacctcaaaca
ctgacccatttacatgtgcagaattatttttactttagtgtataaacaag
gccttaaaaatcgaagcgctgcctcgggaattgaatgacaaaatttggtt
ggttgatattctggctaCTGCACATTTGCAATCtatcattttgtctcatt
ttaagttttcaagttttaattaattgtcttgggaacttgaactttattca
ggtaactctcatccttgttgtttcaaatacatcatgtatttcttaaaaac
tcattattttcttcttttcctgggccaagctatccaaaacaCTCAATGTG
AATAAAAAATAACAGCTTCGCTAACAAAATGTGCGCCTCGAGTAAAAGAC
ATGGTTCCAATCACGTCCGCGAACGGGACAGGCATTTTTTTACGCAGTGG
GCGGCTACAAGTGCGTTTTAGAAATTCGCGTTTTAGACGCGTCTCGAACG
CGTTTGAATTTTCGCGCATGTCATTTTGATTTCGAAAGTGAAAGCAGCTC
GATTTCATGGTGGAATTCAACTTCGTTGGAGATGGGAAGCACCAGgtagg
aataatgaataatgaataatgaaattttgccgcatcaaatattttttgca
acgcgacggtaaacagaacatcaaattcccatcgcctAAATATGTTTAGT
GTTCTATAgaatgatcggtattttttttaaattctatgtttagatttttc
tacccagccccgttgttATGAACGCGcgtcctgttgctaagacctttgct
tgaaatcgaaagcgaaaccaaaatATTATAGCACACACTGCCGCACGCGT
AATATCGATTAATTGAAAGGAAGTCCTGACTGCATCTGGTGGTGGTCAAA
ACAGGCATCTGATACCTAGTTCTATTAATTAAGCACATAATACGCTAAcg
tacattatcatgatataATAAGCACCTAAtcaggaggggtgtcgacatta
gaccaacttatggtactAGGGCCCTATAATTcattattatccgacgcgca
taaatagcgacatttgattggcttctttgctgtccaatattttcaaatat
atagcttccatggaggctacatatttcaaaaattgacgtcacgcaacgag
ttcaatgacaattgagcatcttctttttgacgttacgtcacaaaataaaa
ataagacttttgaataaaaagctaCCAAGAAACCAGCTTTACGGtcttat
aaattggaattatgcttgaaaacgagaaatattttagcggataataaacc
atttatttgtaCAAAGTGGAATCCAATATTTTTCTGCTTAATATTTGCCC
AGCAAAAAGGCATTTGCTATATATGCCCTGAACTGTATGAAAGCAAATAT
GAAATTCTACTAgtaatttagaaaatattacTCAAATGGAAAAGTTTATG
GCATTAGCAGCTTTATGGTTTGGGAAGAAAGCAACAGTTTATGCCATTGG
AAGGGTTGGTTTTAAACTtcagattttgtttttttataaacaccTTCAAC
CAAAATTTAAGACGATTCACAGAAGGTCAAGGCTATAGATTTAAatttaa
agttgaaaatttattcTACAATTTCTTCTAAGACTTTTTAATGATGCATC
AAACTGCATCATACAACATTTTAATATACTTTATACAgagtgtcccaaaa
aaagttctAACACCACTTCtatataagtagaaaaaaaatgtatataagaa
aaagtttctttttttaaaaacacaaCAGTAATTAAACTTCAAAATTATCT
ACAAATCCCAATAATGCAGCAATGGATCACAAAACGCAAAACACTAGAGA
TTTTAAAGGGCAAATTATTTAATGCAACAGGGAAATAGTCTGAAAATGTC
ATCTTTTATTGTCAAGTAATTAAAAAGAATACTATTTAGATTTTATGATA
CACAACAAATTTTTCCTACGTATAAACTTACAGAAGTGgtctgacacagg
actttttTTACGAGACCCCCAGTATAATATCaggctgattttttctgatt
ttgacaGATTATAttaaatttattgaatttttctttataactaGAGTTAT
GGTTTTTCAAGAGTATACAGAAGATTTGTTGAATTCAATCATAAGTCAAC
AAATAATAAAGACTCGTTGAGGAATCGTTCCAATCTGGTAAAAGGCTTTT
TCCGGTTGCCAAACAAAATTGCTGAGAGATTCAAGTAAGTGTCATGAATT
GGGAAGTATTTGttctatttttttagaaaacaattTGGGACCTTTGCAGC
AGCACTGGATGTGCCACAGAAACCTTTTCTTTAAAggaatttttctcaat
ttcttattTAAAGagccaatatttttgcataaaaaagatGTCTTTATTTT
TAATGGGCTACTAATCATTTTTGCCCAATTGGACTGTACTCTGGAAGTTA
TGGCTGAAACAAATTTCAAGTTGGTTCAAGTTCAATGGCAGATTTTTGCC
ATTCTATTAGTTACATCATCATTATGTTGATTcttaattttgcgaatttt
gatttacttttacATTAAAAGACAGCACTTTgatcttttttgtcatttta
aatcTCTGAAACAAGGATTCTGTGATGTAATTGTGCAATTTCattccttt
tttttaatttgattgttttggttaaaaagtttttgaccATCTTCTGAAAG
TTATCACACAATTTGATTTTATCCTTTCCAATGGAAAATGATTTTAATAA
TTTATCTACAGAActgaagaaaatgaaatatttttgtcatagctaaagtc
tgttccaaaaattGGCAGTTACCTTTTTAAAACATTGCtgttgagggggg
gggggggacaaaACTAATTTTTTGCTTTATATAAGCTTTGTAGGATTTCc
taaaagtttcaaataaagattgaaatagataaggaaataaaaaatagata
atCTATGGGTAGGAGGAACATATTTGTGATTTATtgtgttttctatgttt
tctttAGACATCCTGATGAGCATCCACCTTATCCACCTTGATTTGATAAC
ACTCTGATagcaaaattatgttttgtcaCAATGAGAAGGGATACATTGTT
TGAAGTTCATTGTCTTGGTTTGGAAGGATTTAAAaccaaaattgcatttt
ttatatcttttttgaaaGGGAATTATTAATTAATGTGAGAGGTATATTGG
ACAGAGGATGGAGACAAAAATATCATTAGATGCTAgaatttccaacatgt
ttcaGCCCTAACACTGGCTGATACATCAGAAAGTTTTATCTTCAAGTGGC
TGCACTTTTACCATCTACCTGCAATGCTAATTAAAGCTGGTTTGAAACAT
TTTAACACAGTTcgaatttaattttgtattaaaTTTATTATCAAATAGTT
AAATAATCTCCAGTCCATAACTTGTAACACTCTCACTATAATTAGTAATT
GCCTTTAGTAATATCTTAAGGATCACATAATTAATTCAGATTTGAGCCTT
AAATTCATTCTAAGAAGCGTCACATTGATGCAAAAGTTTATATACAGACA
TGAAGAGCAACTTTTAAAGCATTGTTGAAGTAATGATTTGTTATTAAATT
ATTATAcatattttgtacaattttaaacaaagagtatttttaatacattt
tattgcattgaatgaaaaaaacttaaTAAATGTATTTGATTTAAAATACC
TTTTCATAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067442-exon-scaffold_47-1491911889:177747..179800 | TCONS_00067442-exon-scaffold_47-1491911889:177747..179800 | Clytia hemisphaerica | exon |
| TCONS_00067442-exon-scaffold_47-1510915933:177747..179800 | TCONS_00067442-exon-scaffold_47-1510915933:177747..179800 | Clytia hemisphaerica | exon |
| TCONS_00067442-exon-scaffold_47-1575043694:177747..179800 | TCONS_00067442-exon-scaffold_47-1575043694:177747..179800 | Clytia hemisphaerica | exon |
| TCONS_00067442-exon-scaffold_47-1491911889:180391..180530 | TCONS_00067442-exon-scaffold_47-1491911889:180391..180530 | Clytia hemisphaerica | exon |
| TCONS_00067442-exon-scaffold_47-1510915933:180391..180530 | TCONS_00067442-exon-scaffold_47-1510915933:180391..180530 | Clytia hemisphaerica | exon |
| TCONS_00067442-exon-scaffold_47-1575043694:180391..180530 | TCONS_00067442-exon-scaffold_47-1575043694:180391..180530 | Clytia hemisphaerica | exon |
| TCONS_00067442-exon-scaffold_47-1491911889:181304..182008 | TCONS_00067442-exon-scaffold_47-1491911889:181304..182008 | Clytia hemisphaerica | exon |
| TCONS_00067442-exon-scaffold_47-1510915933:181304..182008 | TCONS_00067442-exon-scaffold_47-1510915933:181304..182008 | Clytia hemisphaerica | exon |
| TCONS_00067442-exon-scaffold_47-1575043694:181304..182008 | TCONS_00067442-exon-scaffold_47-1575043694:181304..182008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:177747..182008 + |
Blast
The following BLAST results are available for this feature:
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