XLOC_042127 (gene) - C. hemisphaerica

Overview
NameXLOC_042127
Unique NameXLOC_042127
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_47:177747..182008+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042127 ID=XLOC_042127|Name=XLOC_042127|organism=Clytia hemisphaerica|type=gene|length=4262bp|location=Sequence derived from alignment at scaffold_47:177747..182008+ (Clytia hemisphaerica)
tgtgtgtaatttatcgatgttgatggcttgttgattctttaaagaaaaag
ataacaggtatagctttttctaatcctggaatatcgaggttccagctaca
ctgactTGTTCTTGACTGCTGGAACACCGAAGGATTCTGGAACACCGGAA
GATTCGGAAGCACTTCCTGTGCTCTCTGGAGCATGATTTTTGGCAAATTG
GTCTGCACTGCACCGGGAACTCCgaaatgttcttgtaaaatacCCACTAT
AAGTAGATTgtgcagttagtcacactagcgtcccgccaaaatgcatatca
aagattaatgctgcgaaagcgcgcTGACTAGCAAGCAAAAAAATAcggcg
caaaacttctaaagggatttatgaaaaaataacccggcgctttttaaatg
aaattaacattttcaaaactatgagaaattgcataaaatttgagccatag
atgagaAAATTTaagagccaagccaaccttgaaaactaatttgaagatca
acttcccaagaaaaagatctatgaGGGAGACaaaacccacctagatccgc
gtaCTGTGCCGGATAGGCtacttcccggaaattttgccggacctcaaaca
ctgacccatttacatgtgcagaattatttttactttagtgtataaacaag
gccttaaaaatcgaagcgctgcctcgggaattgaatgacaaaatttggtt
ggttgatattctggctaCTGCACATTTGCAATCtatcattttgtctcatt
ttaagttttcaagttttaattaattgtcttgggaacttgaactttattca
ggtaactctcatccttgttgtttcaaatacatcatgtatttcttaaaaac
tcattattttcttcttttcctgggccaagctatccaaaacaCTCAATGTG
AATAAAAAATAACAGCTTCGCTAACAAAATGTGCGCCTCGAGTAAAAGAC
ATGGTTCCAATCACGTCCGCGAACGGGACAGGCATTTTTTTACGCAGTGG
GCGGCTACAAGTGCGTTTTAGAAATTCGCGTTTTAGACGCGTCTCGAACG
CGTTTGAATTTTCGCGCATGTCATTTTGATTTCGAAAGTGAAAGCAGCTC
GATTTCATGGTGGAATTCAACTTCGTTGGAGATGGGAAGCACCAGgtagg
aataatgaataatgaataatgaaattttgccgcatcaaatattttttgca
acgcgacggtaaacagaacatcaaattcccatcgcctAAATATGTTTAGT
GTTCTATAgaatgatcggtattttttttaaattctatgtttagatttttc
tacccagccccgttgttATGAACGCGcgtcctgttgctaagacctttgct
tgaaatcgaaagcgaaaccaaaatATTATAGCACACACTGCCGCACGCGT
AATATCGATTAATTGAAAGGAAGTCCTGACTGCATCTGGTGGTGGTCAAA
ACAGGCATCTGATACCTAGTTCTATTAATTAAGCACATAATACGCTAAcg
tacattatcatgatataATAAGCACCTAAtcaggaggggtgtcgacatta
gaccaacttatggtactAGGGCCCTATAATTcattattatccgacgcgca
taaatagcgacatttgattggcttctttgctgtccaatattttcaaatat
atagcttccatggaggctacatatttcaaaaattgacgtcacgcaacgag
ttcaatgacaattgagcatcttctttttgacgttacgtcacaaaataaaa
ataagacttttgaataaaaagctaCCAAGAAACCAGCTTTACGGtcttat
aaattggaattatgcttgaaaacgagaaatattttagcggataataaacc
atttatttgtaCAAAGTGGAATCCAATATTTTTCTGCTTAATATTTGCCC
AGCAAAAAGGCATTTGCTATATATGCCCTGAACTGTATGAAAGCAAATAT
GAAATTCTACTAgtaatttagaaaatattacTCAAATGGAAAAGTTTATG
GCATTAGCAGCTTTATGGTTTGGGAAGAAAGCAACAGTTTATGCCATTGG
AAGGGTTGGTTTTAAACTtcagattttgtttttttataaacaccTTCAAC
CAAAATTTAAGACGATTCACAGAAGGTCAAGGCTATAGATTTAAatttaa
agttgaaaatttattcTACAATTTCTTCTAAGACTTTTTAATGATGCATC
AAACTGCATCATACAACATTTTAATATACTTTATACAgagtgtcccaaaa
aaagttctAACACCACTTCtatataagtagaaaaaaaatgtatataagaa
aaagtttctttttttaaaaacacaaCAGTAATTAAACTTCAAAATTATCT
ACAAATCCCAATAATGCAGCAATGGATCACAAAACGCAAAACACTAGAGA
TTTTAAAGGGCAAATTATTTAATGCAACAGGGAAATAGTCTGAAAATGTC
ATCTTTTATTGTCAAGTAATTAAAAAGAATACTATTTAGATTTTATGATA
CACAACAAATTTTTCCTACGTATAAACTTACAGAAGTGgtctgacacagg
actttttTTACGAGACCCCCAGTATAATATCaggctgattttttctgatt
ttgacaGATTATAttaaatttattgaatttttctttataactaGAGTTAT
GGTTTTTCAAGAGTATACAGAAGATTTGTTGAATTCAATCATAAGTCAAC
AAATAATAAAGACTCGTTGAGGAATCGTTCCAATCTGGTAAAAGGCTTTT
TCCGGTTGCCAAACAAAATTGCTGAGAGATTCAAGTAAGTGTCATGAATT
GGGAAGTATTTGttctatttttttagaaaacaattTGGGACCTTTGCAGC
AGCACTGGATGTGCCACAGAAACCTTTTCTTTAAAggaatttttctcaat
ttcttattTAAAGagccaatatttttgcataaaaaagatGTCTTTATTTT
TAATGGGCTACTAATCATTTTTGCCCAATTGGACTGTACTCTGGAAGTTA
TGGCTGAAACAAATTTCAAGTTGGTTCAAGTTCAATGGCAGATTTTTGCC
ATTCTATTAGTTACATCATCATTATGTTGATTcttaattttgcgaatttt
gatttacttttacATTAAAAGACAGCACTTTgatcttttttgtcatttta
aatcTCTGAAACAAGGATTCTGTGATGTAATTGTGCAATTTCattccttt
tttttaatttgattgttttggttaaaaagtttttgaccATCTTCTGAAAG
TTATCACACAATTTGATTTTATCCTTTCCAATGGAAAATGATTTTAATAA
TTTATCTACAGAActgaagaaaatgaaatatttttgtcatagctaaagtc
tgttccaaaaattGGCAGTTACCTTTTTAAAACATTGCtgttgagggggg
gggggggacaaaACTAATTTTTTGCTTTATATAAGCTTTGTAGGATTTCc
taaaagtttcaaataaagattgaaatagataaggaaataaaaaatagata
atCTATGGGTAGGAGGAACATATTTGTGATTTATtgtgttttctatgttt
tctttAGACATCCTGATGAGCATCCACCTTATCCACCTTGATTTGATAAC
ACTCTGATagcaaaattatgttttgtcaCAATGAGAAGGGATACATTGTT
TGAAGTTCATTGTCTTGGTTTGGAAGGATTTAAAaccaaaattgcatttt
ttatatcttttttgaaaGGGAATTATTAATTAATGTGAGAGGTATATTGG
ACAGAGGATGGAGACAAAAATATCATTAGATGCTAgaatttccaacatgt
ttcaGCCCTAACACTGGCTGATACATCAGAAAGTTTTATCTTCAAGTGGC
TGCACTTTTACCATCTACCTGCAATGCTAATTAAAGCTGGTTTGAAACAT
TTTAACACAGTTcgaatttaattttgtattaaaTTTATTATCAAATAGTT
AAATAATCTCCAGTCCATAACTTGTAACACTCTCACTATAATTAGTAATT
GCCTTTAGTAATATCTTAAGGATCACATAATTAATTCAGATTTGAGCCTT
AAATTCATTCTAAGAAGCGTCACATTGATGCAAAAGTTTATATACAGACA
TGAAGAGCAACTTTTAAAGCATTGTTGAAGTAATGATTTGTTATTAAATT
ATTATAcatattttgtacaattttaaacaaagagtatttttaatacattt
tattgcattgaatgaaaaaaacttaaTAAATGTATTTGATTTAAAATACC
TTTTCATAACTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067442TCONS_00067442Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:177747..182008 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.38	6.24	8.43	9.57	5.69	4.1	4.7	5.5	4.46	4.13	3.77	4.11	3.18	3.49	3.43	3.11	4.64	4.14	2.52	3.58	6.51	6.06	5.87	6.06	2.8	4.01	2.97	2.39	4.07	4.18