TCONS_00067441 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067441
Unique NameTCONS_00067441
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067441 ID=TCONS_00067441|Name=TCONS_00067441|organism=Clytia hemisphaerica|type=transcript|length=1196bp
CTTTTATTCGCCCTTTGCAATTGTTAGTAGCTTAGTATAAAATTCAAGAA
CCGTCTACGGTCAAGTTAATATgcaaaaacttatttttagaaACGGTTCA
GAGTGTTGGTTTTTAGACTCTTTAAAATGaatacaatcaaaatttcaact
tttacaCTTTTATTATCAGTCATTCCATACATTGCATGTAGTTATGTGga
tttgaatttgttttgtgGAGATTACAATAATGGGCTCATTGATGTTGCTT
GTCTTGAAAGGATTGGTGACACTCAACACATGAAAACGTTGATCTACAAT
GGACGAAATGATATCGATTGGAATAATTACGGAGCGTCTGTTGAAAAAAT
CTTATGCAAATGTAAAAAGCTTGCGCAAGATTCTGAAAAACAATATTTGA
GTTTTGGAATCCAATTTTACGGTGAATGTTGGGCCAGTGAATATTCAGTT
GAAGACCTCTTGAAGAAAGTTCCAACGTCCAACAAATGCGTCAACGGAAC
GTACAAAGAATGTCAACCACAGAATTTTCATCGTAAAGTAGAGGGACTAA
ATGGAGGAGAAATTACTATCCAATCACAAGCTTGTGCTGGTACTGATGTC
TCAACTTCGCTATACACTTATTATTATCTACGAGAAGTGGAAATCGAGAC
TCCAGATATTGGTAAAGAGACAGAGTGGACCTCATGGACAACATGTACTA
AAAGTTGTGGTAAAGGATATCAAGAAAGAACACGAACAGCTTGTGAAATG
GTCTCTGGTGTTCGCAGATGCGATGTCCTGAAAGAAGAGATGAGAGAATG
CAACAAGCATGCATGTGaagagaaagaagaattTCGACCAATCAACGGAA
AATTTAGGGAATGGTCAAACTGGTCTCCATGCGTTTGTGGAAATACAGCT
CCTTCAATTAGAACAAGAAAATGTGACAATCCAAAACCTCAAAATTCTGG
CAGAAATTGTGTCGGTGAACCTTTCCAAATGAGACCATGCTTCAAGATGA
ACTGCTGagAGCCAAGAGATGTAACCAAAGGAAAGTAAGAAGATGAATTT
TTCGTATTTTGATTAAAATCAATCCATTTGTAAATTTATTCGTTAATTAG
AACAATATCGTTCAACAAACTAAAAATTTCAGGCTTATTTTCATGGTTCC
CTATAACCATTTAAACTAGCACCACTATTTTTACAACAAACCAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_47:144560..147694+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067441 ID=TCONS_00067441|Name=TCONS_00067441|organism=Clytia hemisphaerica|type=transcript|length=3135bp|location=Sequence derived from alignment at scaffold_47:144560..147694+ (Clytia hemisphaerica)
CTTTTATTCGCCCTTTGCAATTGTTAGTAGCTTAGTATAAAATTCAAGAA
CCGTCTACGGTCAAGTTAATATgcaaaaacttatttttagaaACGGTTCA
GAGTGTTGGTTTTTAGACTCTTTAAAATGaatacaatcaaaatttcaact
tttacaCTTTTATTATCAGGTAAGTCATTTTTTGGAAGTTTAGTTGCGGT
CATTTTTTGCCGTTATTCTTAGCCACGTGATGTCTggtattacacttttt
tttataagagcatctaaattttaaagccttcggattttcttaaacttttt
aagtttcaaatgttcttcaaatttttcctcttttttctatatttttgtcT
GTCTTCGAGTCCgcaaagctttttaaaaatattctcaacttgttcttaat
attttggccatcgaagccttatgttcttatagtttgttccTATGAAACAA
CGTGTACCATTTAATCTCTGCATTAGTTTTGAAGACTCCCCAACTGGTCA
TCTTAATCATACTTCTGGCAAAATGAAGATACTAAAGCAATCATAGGCTT
TCACTGTTCCTCATCCGGGGCTAAAATGTTAACAATTTTGACGTGTATAG
TATATATCTTTTTCGCTCTTTCAGTCATTCCATACATTGCATGTAGTTAT
GTGgatttgaatttgttttgtgGAGATTACAATAATGGGCTCATTGATGT
TGCTTGTCTTGAAAGGATTGGTGACACTCAACACATGAAAACGTTGATCT
ACAATGGACGAAATGATATCGATTGGAATAATTACGGAGCGTCTGTTGAA
AAGTATGATCACTTTGTACTTATTTATACTCTATGTTTTAttcaaattat
caattttaaCACTTTGAAGATTATTTCAAGATAAGATCCAAGGTTCTGCA
CCCCGTCACTGATCCACTGAGTTGCACTAGTGTATGTGAATTATCTTCAA
AAAATGACATCATCCCTTGTTTGTCATTCGGTTAAGGATTTCTGTAAAAG
TAATTCTACAGTTTGCACCGAATGgccttttaaataattttgtttttctg
cCATTATAGAATCTTATGCAAATGTAAAAAGCTTGCGCAAGATTCTGAAA
AACAATATTTGAGTTTTGGAATCCAATTTTACGGTGAATGTTGGGCCAGT
GAATATTCAGTTGAAGACCTCTTGAAGAAAGTTCCAACGTCCAACAAATG
CGTCAACGGAACGTACAAAGAATGTCAACCACAGAATTTTCATCGTAAAG
TAGAGGGACTAAATGGAGGAGAAATTACTATCCAATCACAAGCTTGTGCT
GGTACTGATGTCTCAACTTCGCTATACACTTATTGTGAGTATTGTATTGT
TGTTGTTAGCGCTCAGACGTATGACATTTATTTCAAAACGCAAGATAAAC
TAGTTGTCATCAGTGCAAATTCTTTATAACCTTTGAGGTTATTTTATATT
AACTTCTTTTTTGTCAAAACGCCTTGAAACAatcgaatttggccaaaaat
ctaaaaattttaacaacCTATGACATTGGATTTTATTTCATAGCTTCCAC
AATcctggccataatatttgagacNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNca
ttcattcattcattcattcattcatattcATTTACTTTAAGATTATCTAC
GAGAAGTGGAAATCGAGACTCCAGATATTGGTAAAGAGACAGAGTGGACC
TCATGGACAACATGTACTAAAAGTTGTGGTAAAGGATATCAAGAAAGAAC
ACGAACAGCTTGTGAAATGGTCTCTGGTGTTCGCAGATGCGATGTCCTGA
AAGAAGAGATGAGAGAATGCAACAAGCATGCATGTGGTTAGCATTTCTTC
ACTACTCTTACCCTCATTTTTTTAATAGAGACCTCGAGCTCGAATTTGAT
ACTGTCAAATTGGTCATCGCCAAAGATGAGTTATTCAGTTATTCAGAATC
TGTTCTATCCAAATCTTTTTGACACCCTTTGTTAATTTTATGTGGTGAAT
TCGAATCACAAGTCAGTGAAAACAACACTTTATACGTACAGATATGTTTA
ATACGAAATGGGCTAGGAAAAGTAATAAATAAACAACCTAGAATGTTTTT
TGAATTCAAACTAATATTTCTTATTTagaagaagagaaagaagaattTCG
ACCAATCAACGGAAAATTTAGGGAATGGTCAAACTGGTCTCCATGCGTTT
GTGGAAATACAGCTCCTTCAATTAGAACAAGAAAATGTGACAATCCAAAA
CCTCAAAATTCTGGCAGAAATTGTGTCGGTGAACCTTTCCAAATGAGACC
ATGCTTCAAGATGAACTGCTGGTAAGAAGAGCTCGGTTATTTTTTTCGCT
ATAGAAGAttcaagtttttaatttttagacgTCGTCACAAAATGATGCAG
AATTGAAGGTTTTTTTTGCTAATATGTAAATTTAAATAGCCTGTCACTAA
ACTCGACCTTGTTACCCTTGAGTTTGTATTGAGGAATCAATTACAGAGAC
AAGTTTTGGAATTTATGTGAAATATTtgctcttttcttttttctagagAG
CCAAGAGATGTAACCAAAGGAAAGTAAGAAGATGAATTTTTCGTATTTTG
ATTAAAATCAATCCATTTGTAAATTTATTCGTTAATTAGAACAATATCGT
TCAACAAACTAAAAATTTCAGGCTTATTTTCATGGTTCCCTATAACCATT
TAAACTAGCACCACTATTTTTACAACAAACCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042126XLOC_042126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067441-exon-scaffold_47-1491911889:144560..144728TCONS_00067441-exon-scaffold_47-1491911889:144560..144728Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1510915933:144560..144728TCONS_00067441-exon-scaffold_47-1510915933:144560..144728Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1575043694:144560..144728TCONS_00067441-exon-scaffold_47-1575043694:144560..144728Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1491911889:145184..145361TCONS_00067441-exon-scaffold_47-1491911889:145184..145361Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1510915933:145184..145361TCONS_00067441-exon-scaffold_47-1510915933:145184..145361Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1575043694:145184..145361TCONS_00067441-exon-scaffold_47-1575043694:145184..145361Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1491911889:145619..145893TCONS_00067441-exon-scaffold_47-1491911889:145619..145893Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1510915933:145619..145893TCONS_00067441-exon-scaffold_47-1510915933:145619..145893Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1575043694:145619..145893TCONS_00067441-exon-scaffold_47-1575043694:145619..145893Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1491911889:146601..146795TCONS_00067441-exon-scaffold_47-1491911889:146601..146795Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1510915933:146601..146795TCONS_00067441-exon-scaffold_47-1510915933:146601..146795Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1575043694:146601..146795TCONS_00067441-exon-scaffold_47-1575043694:146601..146795Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1491911889:147091..147280TCONS_00067441-exon-scaffold_47-1491911889:147091..147280Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1510915933:147091..147280TCONS_00067441-exon-scaffold_47-1510915933:147091..147280Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1575043694:147091..147280TCONS_00067441-exon-scaffold_47-1575043694:147091..147280Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1491911889:147506..147694TCONS_00067441-exon-scaffold_47-1491911889:147506..147694Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1510915933:147506..147694TCONS_00067441-exon-scaffold_47-1510915933:147506..147694Clytia hemisphaericaexon
TCONS_00067441-exon-scaffold_47-1575043694:147506..147694TCONS_00067441-exon-scaffold_47-1575043694:147506..147694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:144560..147694 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.00125758	0	0	0	0.838563	28.6039	20.4136	0.179249	0.0631802	11.6737	14.4548	146.976	175.871	91.254	85.8467	25.3868	51.3661	31.5509	36.3419	0	0	0	0.0809522
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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