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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067430 ID=TCONS_00067430|Name=TCONS_00067430|organism=Clytia hemisphaerica|type=transcript|length=3026bpRun BLAST on NCBI protein sequence of TCONS_00067430-protein >TCONS_00067430-protein ID=TCONS_00067430-protein|Name=TCONS_00067430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=905bp MTTEDSKVHIATALNLSWAFGINKHVPVLNLSTKHKKALFYITGHTGVLFRun BLAST on NCBI transcript from alignment at scaffold_47:13836..68209+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067430 ID=TCONS_00067430|Name=TCONS_00067430|organism=Clytia hemisphaerica|type=transcript|length=54374bp|location=Sequence derived from alignment at scaffold_47:13836..68209+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_47:13836..68209+ >TCONS_00067430 ID=TCONS_00067430|Name=TCONS_00067430|organism=Clytia hemisphaerica|type=CDS|length=67950bp|location=Sequence derived from alignment at scaffold_47:13836..68209+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067430 vs. Swiss-Prot (Human)
Match: CF251 (Cilia- and flagella-associated protein 251 OS=Homo sapiens GN=WDR66 PE=2 SV=2) HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0 Identity = 365/919 (39.72%), Postives = 554/919 (60.28%), Query Frame = 1
Query: 136 LNLSWAFGINKHVPVLNLSTKHKKALFYITGHTGVLFDFENNTQILYQGHCNNISASCVSTDKRWLATSDIGKNSMIIVWDTNQSIPIKTLFDVDPVGT--KKLCFSNDAKYIVSLGADLPQVVNVWNWTLGDDEPLISLKLQPTLHLQNYITFSTNNVEDVVSNSPDQVIFYKWNLEGE-MSHVAPRLEDKDFNKTIGNYSQTIFQPNSSLALTATDYGNIVVWACASSTTSE--------MKALKIIHMQEKPITVLTSILDYLVTADVSGYVKFFDSQMKLINWYKQLGCQGAVNGVSFTFTKTKPALHQPATLEEGAEMGGDYPDQSTLEEREFIVDDFSVSTDRAQYLYFQTDGSQTLFLQQEHEKDIRAIACHPKSSYLAIGSFSGILQIIDYETKELQQQLRYSQNYSR---ITSLAYSQGGDFLAIGFDTGNVEILDSVTLQIEGSLSGVAENEARFDYSNDAIKHMCFSHDNTYLACADIDNCVVVFVYNEKDPLIPWRYLGKHRAHYKPISDLMFLESLDEGEPRLLSLGHDRMLVEYDLANXXXXXXXXXXXXXIEQDGVPISLSLYPPVVKESFLLVSNDKYKLKLFNTTTKMCRHTFLGPTYGTPIQKISVLPTTD-DKTCKRFMAYCTQDKIGLSMFPLDGNPFKSMALIAHPNKVHDLVCSFDGKYVFTAGGEDTTVLMWKTDTNALEASARLGGEGLTPFYTXXXXXXXXXXXXXXXXYFYYAQMKHQGIDTMETREVSGTIPLSEIPFVVRALGFYPTEQQIEEMTNEVKFSSYVETGHYVNQVDLEALIKLYINHRPAFGLHPDQLVNAFEKIGLIGEEGDVEIQRSELLAILQDKGEHLSEGELAEYLSSLFG---GGADTE---------NFSLEDCLPEKISISMFAKQLLGLELASE 2811
L ++W+FG N +PV + + ++ L Y+ HT ++++ N Q QGH N IS CVS D+RW+AT+D G + ++I+WD+ IP+ T+FD P G + ++DAKY+ ++ Q V +W WTL + P +L+L +QNY+TF+ N +++VSNS + I+Y W E + ++H AP L +K FNK +G +SQ+IF N + L+AT G +VVW +S +K K++H+Q++ ITVLT+I Y+VT D+ G +KF+D + ++NWY L GA+ +SF+ T P + +YP TL+ F++ +F + T A + TDG++ L E + I AI+CHP +AIGS G++++ +YE K Q +S+ + + + SL Y+ G L GF G V ILD+++L+ E+ F YS ++ H+ FSHD+ Y+A AD V V++ ++ W YL + R+H K I L+F LD EPRLLSLG DR+L+EYDL S D L +L +Q P + YPP+ +E FLL+ N YK+KLFN TTKMCR T LGP YG+PI++ VLP + KR++ + +DK+GL + P+DGNP K+ A++ HPN V + S+DG Y FTAGG D +V+ WK + LEA+ LGGE LTPFY LL GGREG+ + ELE+YFYY+Q++ QGIDTMETR+VS I LSE+PFV+RA+GFYP+E++I+++ NE+KF YV+TG +++++L +K+Y+NH+P FG + +FE +G +G I+R + L +L KGEH++E E+ + +SLFG G +E LE+ LP++I+ +FA ++LGL ++ +
Sbjct: 249 LTMTWSFGWNSSLPVYYIREERQRVLLYVCAHTAIIYNVFRNNQYHLQGHANIISCLCVSEDRRWIATADKGPDCLVIIWDSFTGIPVHTIFDSCPEGNGIMAMAMTHDAKYLATISDAEVQKVCIWKWTLAVETPACTLELPTEYGVQNYVTFNPTNNKELVSNSKTRAIYYAWYEERDTLAHSAPLLTEKTFNKLVGKFSQSIFHLNLTQILSATMEGKLVVWDIHRPPSSASTFLGFPYIKPCKLVHLQKEGITVLTTIDSYIVTGDIKGNIKFYDHTLSIVNWYSHLKL-GAIRTLSFSKTPATPPTEK-----------SNYPPDCTLKGDLFVLRNFIIGTSDAAVYHLTTDGTKLEKLFVEPKDAICAISCHPYQPLIAIGSICGMIKVWNYENK----QYLFSRVFEKGLGVQSLTYNPEGALLGAGFTEGTVYILDAMSLE--------NESPEPFKYSRTSVTHISFSHDSQYMATADRSFTVAVYMLVVRNGQRVWEYLARLRSHRKSIRSLLFGVYLDSNEPRLLSLGTDRLLIEYDLLRSYKDHLEVLDIHHTDQGCYPTCMVWYPPLTRELFLLICNSGYKVKLFNATTKMCRKTLLGPAYGSPIEQTQVLPVRSMAELQKRYLVFINRDKVGLQILPVDGNPHKTSAIVCHPNGVAGMAVSYDGCYAFTAGGHDRSVVQWKITLSVLEAAVSLGGEDLTPFYGLLSGGREGKFYRELEDYFYYSQLRSQGIDTMETRKVSEHICLSELPFVMRAIGFYPSEEKIDDIFNEIKFGEYVDTGKLIDKINLPDFLKVYLNHKPPFGNTMSGIHKSFEVLGYTNSKGKKAIRREDFLRLLVTKGEHMTEEEMLDCFASLFGLNPEGWKSEPATCSVKGSEICLEEELPDEITAEIFATEILGLTISED 1143 The following BLAST results are available for this feature:
BLAST of TCONS_00067430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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