TCONS_00067430-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067430-protein
Unique Name	TCONS_00067430-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	905

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067430-protein ID=TCONS_00067430-protein|Name=TCONS_00067430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=905bp
MTTEDSKVHIATALNLSWAFGINKHVPVLNLSTKHKKALFYITGHTGVLF
DFENNTQILYQGHCNNISASCVSTDKRWLATSDIGKNSMIIVWDTNQSIP
IKTLFDVDPVGTKKLCFSNDAKYIVSLGADLPQVVNVWNWTLGDDEPLIS
LKLQPTLHLQNYITFSTNNVEDVVSNSPDQVIFYKWNLEGEMSHVAPRLE
DKDFNKTIGNYSQTIFQPNSSLALTATDYGNIVVWACASSTTSEMKALKI
IHMQEKPITVLTSILDYLVTADVSGYVKFFDSQMKLINWYKQLGCQGAVN
GVSFTFTKTKPALHQPATLEEGAEMGGDYPDQSTLEEREFIVDDFSVSTD
RAQYLYFQTDGSQTLFLQQEHEKDIRAIACHPKSSYLAIGSFSGILQIID
YETKELQQQLRYSQNYSRITSLAYSQGGDFLAIGFDTGNVEILDSVTLQI
EGSLSGVAENEARFDYSNDAIKHMCFSHDNTYLACADIDNCVVVFVYNEK
DPLIPWRYLGKHRAHYKPISDLMFLESLDEGEPRLLSLGHDRMLVEYDLA
NSSLDELRLLSSDRIEQDGVPISLSLYPPVVKESFLLVSNDKYKLKLFNT
TTKMCRHTFLGPTYGTPIQKISVLPTTDDKTCKRFMAYCTQDKIGLSMFP
LDGNPFKSMALIAHPNKVHDLVCSFDGKYVFTAGGEDTTVLMWKTDTNAL
EASARLGGEGLTPFYTLLEGGREGELFSELEEYFYYAQMKHQGIDTMETR
EVSGTIPLSEIPFVVRALGFYPTEQQIEEMTNEVKFSSYVETGHYVNQVD
LEALIKLYINHRPAFGLHPDQLVNAFEKIGLIGEEGDVEIQRSELLAILQ
DKGEHLSEGELAEYLSSLFGGGADTENFSLEDCLPEKISISMFAKQLLGL
ELASE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042123	XLOC_042123	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067430	TCONS_00067430	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom
IPR011047	Quinoprotein_ADH-like_supfam
IPR011992	EF-hand-dom_pair

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 53..94 e-value: 1.5 score: 15.9 coord: 457..496 e-value: 0.81 score: 17.6 coord: 403..444 e-value: 3.8 score: 13.4 coord: 361..400 e-value: 0.044 score: 22.9 coord: 505..548 e-value: 73.0 score: 5.2 coord: 244..281 e-value: 21.0 score: 8.7 coord: 654..694 e-value: 0.55 score: 18.7
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 57..94 e-value: 0.021 score: 15.6 coord: 661..694 e-value: 0.0056 score: 17.4
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 23..318 e-value: 1.2E-19 score: 70.0
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 581..717 e-value: 2.6E-10 score: 39.5
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 344..580 e-value: 5.6E-27 score: 93.9
None	No IPR available	GENE3D	1.10.238.10		coord: 725..882 e-value: 2.5E-4 score: 20.2
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 368..453 score: 8.756
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 350..694
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	SUPERFAMILY	50998	Quinoprotein alcohol dehydrogenase-like	coord: 360..501 coord: 14..283
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 753..867

Blast

[Close]

BLAST of TCONS_00067430-protein vs. Swiss-Prot (Human)
Match: CF251 (Cilia- and flagella-associated protein 251 OS=Homo sapiens GN=WDR66 PE=2 SV=2)

HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 365/919 (39.72%), Postives = 554/919 (60.28%), Query Frame = 0

Query:   14 LNLSWAFGINKHVPVLNLSTKHKKALFYITGHTGVLFDFENNTQILYQGHCNNISASCVSTDKRWLATSDIGKNSMIIVWDTNQSIPIKTLFDVDPVGT--KKLCFSNDAKYIVSLGADLPQVVNVWNWTLGDDEPLISLKLQPTLHLQNYITFSTNNVEDVVSNSPDQVIFYKWNLEGE-MSHVAPRLEDKDFNKTIGNYSQTIFQPNSSLALTATDYGNIVVWACASSTTSE--------MKALKIIHMQEKPITVLTSILDYLVTADVSGYVKFFDSQMKLINWYKQLGCQGAVNGVSFTFTKTKPALHQPATLEEGAEMGGDYPDQSTLEEREFIVDDFSVSTDRAQYLYFQTDGSQTLFLQQEHEKDIRAIACHPKSSYLAIGSFSGILQIIDYETKELQQQLRYSQNYSR---ITSLAYSQGGDFLAIGFDTGNVEILDSVTLQIEGSLSGVAENEARFDYSNDAIKHMCFSHDNTYLACADIDNCVVVFVYNEKDPLIPWRYLGKHRAHYKPISDLMFLESLDEGEPRLLSLGHDRMLVEYDLANSSLDELRLLSSDRIEQDGVPISLSLYPPVVKESFLLVSNDKYKLKLFNTTTKMCRHTFLGPTYGTPIQKISVLPTTD-DKTCKRFMAYCTQDKIGLSMFPLDGNPFKSMALIAHPNKVHDLVCSFDGKYVFTAGGEDTTVLMWKTDTNALEASARLGGEGLTPFYTLLEGGREGELFSELEEYFYYAQMKHQGIDTMETREVSGTIPLSEIPFVVRALGFYPTEQQIEEMTNEVKFSSYVETGHYVNQVDLEALIKLYINHRPAFGLHPDQLVNAFEKIGLIGEEGDVEIQRSELLAILQDKGEHLSEGELAEYLSSLFG---GGADTE---------NFSLEDCLPEKISISMFAKQLLGLELASE 905
            L ++W+FG N  +PV  +  + ++ L Y+  HT ++++   N Q   QGH N IS  CVS D+RW+AT+D G + ++I+WD+   IP+ T+FD  P G     +  ++DAKY+ ++     Q V +W WTL  + P  +L+L     +QNY+TF+  N +++VSNS  + I+Y W  E + ++H AP L +K FNK +G +SQ+IF  N +  L+AT  G +VVW      +S         +K  K++H+Q++ ITVLT+I  Y+VT D+ G +KF+D  + ++NWY  L   GA+  +SF+ T   P   +            +YP   TL+   F++ +F + T  A   +  TDG++   L  E +  I AI+CHP    +AIGS  G++++ +YE K    Q  +S+ + +   + SL Y+  G  L  GF  G V ILD+++L+         E+   F YS  ++ H+ FSHD+ Y+A AD    V V++   ++    W YL + R+H K I  L+F   LD  EPRLLSLG DR+L+EYDL  S  D L +L     +Q   P  +  YPP+ +E FLL+ N  YK+KLFN TTKMCR T LGP YG+PI++  VLP     +  KR++ +  +DK+GL + P+DGNP K+ A++ HPN V  +  S+DG Y FTAGG D +V+ WK   + LEA+  LGGE LTPFY LL GGREG+ + ELE+YFYY+Q++ QGIDTMETR+VS  I LSE+PFV+RA+GFYP+E++I+++ NE+KF  YV+TG  +++++L   +K+Y+NH+P FG     +  +FE +G    +G   I+R + L +L  KGEH++E E+ +  +SLFG    G  +E            LE+ LP++I+  +FA ++LGL ++ +
Sbjct:  249 LTMTWSFGWNSSLPVYYIREERQRVLLYVCAHTAIIYNVFRNNQYHLQGHANIISCLCVSEDRRWIATADKGPDCLVIIWDSFTGIPVHTIFDSCPEGNGIMAMAMTHDAKYLATISDAEVQKVCIWKWTLAVETPACTLELPTEYGVQNYVTFNPTNNKELVSNSKTRAIYYAWYEERDTLAHSAPLLTEKTFNKLVGKFSQSIFHLNLTQILSATMEGKLVVWDIHRPPSSASTFLGFPYIKPCKLVHLQKEGITVLTTIDSYIVTGDIKGNIKFYDHTLSIVNWYSHLKL-GAIRTLSFSKTPATPPTEK-----------SNYPPDCTLKGDLFVLRNFIIGTSDAAVYHLTTDGTKLEKLFVEPKDAICAISCHPYQPLIAIGSICGMIKVWNYENK----QYLFSRVFEKGLGVQSLTYNPEGALLGAGFTEGTVYILDAMSLE--------NESPEPFKYSRTSVTHISFSHDSQYMATADRSFTVAVYMLVVRNGQRVWEYLARLRSHRKSIRSLLFGVYLDSNEPRLLSLGTDRLLIEYDLLRSYKDHLEVLDIHHTDQGCYPTCMVWYPPLTRELFLLICNSGYKVKLFNATTKMCRKTLLGPAYGSPIEQTQVLPVRSMAELQKRYLVFINRDKVGLQILPVDGNPHKTSAIVCHPNGVAGMAVSYDGCYAFTAGGHDRSVVQWKITLSVLEAAVSLGGEDLTPFYGLLSGGREGKFYRELEDYFYYSQLRSQGIDTMETRKVSEHICLSELPFVMRAIGFYPSEEKIDDIFNEIKFGEYVDTGKLIDKINLPDFLKVYLNHKPPFGNTMSGIHKSFEVLGYTNSKGKKAIRREDFLRLLVTKGEHMTEEEMLDCFASLFGLNPEGWKSEPATCSVKGSEICLEEELPDEITAEIFATEILGLTISED 1143

The following BLAST results are available for this feature:

BLAST of TCONS_00067430-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067430-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CF251	0.000e+0	39.72	Cilia- and flagella-associated protein 251 OS=Homo...	[more]

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TCONS_00067430-protein (polypeptide) - C. hemisphaerica