TCONS_00065884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065884
Unique NameTCONS_00065884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065884 ID=TCONS_00065884|Name=TCONS_00065884|organism=Clytia hemisphaerica|type=transcript|length=473bp
gggattcagtttctgaagtttcttgctttcaaGCTTGACAAGTTTTCTAA
TATCTTTTGCCCTCGATTTAAGAATTCTTTTAAACCTggttctgataaaa
aataaaaattatggtatAAGGCTGCGAAGGTACTTTCCGACATAACAACC
CGAAACACTTTGCAAATTACTTCAATATAATTCATATGGGAATACCgtaa
ttaaaaattacaaattgaGTCGGTAACACCTTCAAGACCTGTTAAAATTG
TTGCACTAAGTATATCCCTGTTAGCTGATAGCCCCGAACAgtaagaaaaa
catatttctgAAAAAGTCTACATCATAAAATACGAAAGCAGACTTCAATT
TGGATTGAACTTCCACCTAAACATTCTGTTGAAAATAAAGTTCAGTCATT
AAGATATATTCCTAAAAAAGCGTGCATATGTGAAATTAAACATGAACTCC
CTATCCTATCCGTTTCACAAATT
Run BLAST on NCBI

transcript from alignment at scaffold_447:483787..484259

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065884 ID=TCONS_00065884|Name=TCONS_00065884|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at scaffold_447:483787..484259 (Clytia hemisphaerica)
AATTTGTGAAACGGATAGGATAGGGAGTTCATGTTTAATTTCACATATGC
ACGCTTTTTTAGGAATATATCTTAATGACTGAACTTTATTTTCAACAGAA
TGTTTAGGTGGAAGTTCAATCCAAATTGAAGTCTGCTTTCGTATTTTATG
ATGTAGACTTTTTcagaaatatgtttttcttacTGTTCGGGGCTATCAGC
TAACAGGGATATACTTAGTGCAACAATTTTAACAGGTCTTGAAGGTGTTA
CCGACtcaatttgtaatttttaattacGGTATTCCCATATGAATTATATT
GAAGTAATTTGCAAAGTGTTTCGGGTTGTTATGTCGGAAAGTACCTTCGC
AGCCTTataccataatttttattttttatcagaaccAGGTTTAAAAGAAT
TCTTAAATCGAGGGCAAAAGATATTAGAAAACTTGTCAAGCttgaaagca
agaaacttcagaaactgaatccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041282XLOC_041282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065884-exon-scaffold_447-1491911889:483787..484259TCONS_00065884-exon-scaffold_447-1491911889:483787..484259Clytia hemisphaericaexon
TCONS_00065884-exon-scaffold_447-1510915933:483787..484259TCONS_00065884-exon-scaffold_447-1510915933:483787..484259Clytia hemisphaericaexon
TCONS_00065884-exon-scaffold_447-1575043694:483787..484259TCONS_00065884-exon-scaffold_447-1575043694:483787..484259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:483787..484259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.940698	0.786282	2.65374	4.91247	3.62452	1.57528	2.76438	2.91147	1.69866	1.12217	1.6338	0.626499	0.625629	1.25448	1.60248	0.573235	0.907943	0.620409	0	0.747435	0.887204	2.47166	0	1.26076	1.58712	3.00008	1.10561	1.17994	2.19825	1.21574
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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