TCONS_00064386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064386
Unique NameTCONS_00064386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064386 ID=TCONS_00064386|Name=TCONS_00064386|organism=Clytia hemisphaerica|type=transcript|length=269bp
CTCCAGGCCTTAAACTTTCCATGAGCTTTTGCTTCACTAATTAGcataat
atttagaaaaatattcttgttATTTAATATTGTGGATtattttcgattgt
tttttattttatatatccTTATGTAATCAGTCATTATTGTACACCAATTG
AATCCTATACCGACTGAAAATATTTGCAAGAGATGAATTAAAACCTAATG
CAAGTCTTGTCAACGTACTTTTGTAGTAATTTTTATATATCTTAAATGAT
GACACATTAGACCTTGGCC
Run BLAST on NCBI

transcript from alignment at scaffold_412:15390..15658

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064386 ID=TCONS_00064386|Name=TCONS_00064386|organism=Clytia hemisphaerica|type=transcript|length=269bp|location=Sequence derived from alignment at scaffold_412:15390..15658 (Clytia hemisphaerica)
GGCCAAGGTCTAATGTGTCATCATTTAAGATATATAAAAATTACTACAAA
AGTACGTTGACAAGACTTGCATTAGGTTTTAATTCATCTCTTGCAAATAT
TTTCAGTCGGTATAGGATTCAATTGGTGTACAATAATGACTGATTACATA
AggatatataaaataaaaaacaatcgaaaataATCCACAATATTAAATaa
caagaatatttttctaaatattatgCTAATTAGTGAAGCAAAAGCTCATG
GAAAGTTTAAGGCCTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040370XLOC_040370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064386-exon-scaffold_412-1491911889:15390..15658TCONS_00064386-exon-scaffold_412-1491911889:15390..15658Clytia hemisphaericaexon
TCONS_00064386-exon-scaffold_412-1510915933:15390..15658TCONS_00064386-exon-scaffold_412-1510915933:15390..15658Clytia hemisphaericaexon
TCONS_00064386-exon-scaffold_412-1575043694:15390..15658TCONS_00064386-exon-scaffold_412-1575043694:15390..15658Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_412supercontigscaffold_412:15390..15658 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.623	6.72703	6.50893	3.82079	3.8762	1.22521	2.21725	2.76768	1.93772	1.20009	2.91208	5.19872	2.29395	1.5882	1.63214	1.40123	2.15775	2.65395	5.49986	1.27894	2.77907	7.31987	5.27305	5.99246	0	0	9.45907	4.20624	4.4664	1.95024
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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