TCONS_00062991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062991
Unique NameTCONS_00062991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1153

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062991 ID=TCONS_00062991|Name=TCONS_00062991|organism=Clytia hemisphaerica|type=transcript|length=1153bp
aattggatcactctgttagagctttttagcatggggcggccgagcgctta
agtaccataccaaagcgaataaaatctaatacaattgaatcaatcaaacg
caatcgaatacaattgaacgtaatcgaatacaatcgaacgtaatcgaagc
aatcaaacagcaaatcctgggtaatattcgattgcaattcaattgcgttc
gacaatcgaattgcaattattcgattgcgttcaattgcgttcgattgatt
cggcgttcgattcgttcgattgacaccgtctggatataCAGGCAAATTAT
CTCAAAATAAATAGACCTAGCTTTCTGTTTGTTTTATATCTGAGCTCGCT
ATATTTAACGCTTTATTACCAACATTTGAAGTCACAGTTTCAAATGAATT
TAAAGCTGCATTGGAGTTCTTCTGCAAAAACTCAACCTCCTTTGGAGTAA
GATTTTCTCCCAACTTTTTTAAAGCTGCAAGAATTTCAACACCCTGTTGT
TTATAAGCTGCCTCTGATAATTTCCCAAGGTCGACATCACGCTGCATTTG
AGCAAGCTTTTGTCGCAGTTGGTCAGGTTGTTTTTTGGCAAACATTTTTA
TAACTTCTGGTGTTTTGAATGCTTCAGAGATGGCAGCCTGTATTGCAATT
TGCATCCCATCTAATTTATCAACTAATGTCATGTTACCCTCAACAAGTTT
CTGGAGTGattcttgaaattctttaagCTGTTCCaaagtttcttgttttg
tttcttCATACTCGTCATCATCCAAATCTTCACGACATTCTTCCAAGTCA
CTCAACTGATTCATCAATCGATCAAGCTGTTCTTCAAGATTATGTTGCAA
TTTTTCAGTCTCAGACTGTCCCCTTGATGCCattcttttaaattcaattt
aaGCTGTTAAGTAacgaacaaagaaaaaaaaccttaCACTCAAGAAGGAA
GCAGAGACAGAAGTTTCTACGATGGCCCCGAGGTTTCTCCACTTCTAGAA
AAAGACAATTCAAGAAGAGAAGTAATAAATGAAGaagggaagtaaaaatt
tcaagaagagaagtaatttttttgtattacttcactgaaaattttacttt
tcttcttgatttttttacttctctttcaagctttgaaaaatgaagaagag
aag
Run BLAST on NCBI

protein sequence of TCONS_00062991-protein

>TCONS_00062991-protein ID=TCONS_00062991-protein|Name=TCONS_00062991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MASRGQSETEKLQHNLEEQLDRLMNQLSDLEECREDLDDDEYEETKQETL
EQLKEFQESLQKLVEGNMTLVDKLDGMQIAIQAAISEAFKTPEVIKMFAK
KQPDQLRQKLAQMQRDVDLGKLSEAAYKQQGVEILAALKKLGENLTPKEV
EFLQKNSNAALNSFETVTSNVGNKALNIASSDIKQTES
Run BLAST on NCBI

transcript from alignment at scaffold_375:20339..21491

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062991 ID=TCONS_00062991|Name=TCONS_00062991|organism=Clytia hemisphaerica|type=transcript|length=1153bp|location=Sequence derived from alignment at scaffold_375:20339..21491 (Clytia hemisphaerica)
cttctcttcttcatttttcaaagcttgaaagagaagtaaaaaaatcaaga
agaaaagtaaaattttcagtgaagtaatacaaaaaaattacttctcttct
tgaaatttttacttcccttCTTCATTTATTACTTCTCTTCTTGAATTGTC
TTTTTCTAGAAGTGGAGAAACCTCGGGGCCATCGTAGAAACTTCTGTCTC
TGCTTCCTTCTTGAGTGtaaggttttttttctttgttcgtTACTTAACAG
CttaaattgaatttaaaagaatGGCATCAAGGGGACAGTCTGAGACTGAA
AAATTGCAACATAATCTTGAAGAACAGCTTGATCGATTGATGAATCAGTT
GAGTGACTTGGAAGAATGTCGTGAAGATTTGGATGATGACGAGTATGaag
aaacaaaacaagaaactttGGAACAGcttaaagaatttcaagaatCACTC
CAGAAACTTGTTGAGGGTAACATGACATTAGTTGATAAATTAGATGGGAT
GCAAATTGCAATACAGGCTGCCATCTCTGAAGCATTCAAAACACCAGAAG
TTATAAAAATGTTTGCCAAAAAACAACCTGACCAACTGCGACAAAAGCTT
GCTCAAATGCAGCGTGATGTCGACCTTGGGAAATTATCAGAGGCAGCTTA
TAAACAACAGGGTGTTGAAATTCTTGCAGCTTTAAAAAAGTTGGGAGAAA
ATCTTACTCCAAAGGAGGTTGAGTTTTTGCAGAAGAACTCCAATGCAGCT
TTAAATTCATTTGAAACTGTGACTTCAAATGTTGGTAATAAAGCGTTAAA
TATAGCGAGCTCAGATATAAAACAAACAGAAAGCTAGGTCTATTTATTTT
GAGATAATTTGCCTGtatatccagacggtgtcaatcgaacgaatcgaacg
ccgaatcaatcgaacgcaattgaacgcaatcgaataattgcaattcgatt
gtcgaacgcaattgaattgcaatcgaatattacccaggatttgctgtttg
attgcttcgattacgttcgattgtattcgattacgttcaattgtattcga
ttgcgtttgattgattcaattgtattagattttattcgctttggtatggt
acttaagcgctcggccgccccatgctaaaaagctctaacagagtgatcca
att

Coding sequence (CDS) from alignment at scaffold_375:20339..21491

>TCONS_00062991 ID=TCONS_00062991|Name=TCONS_00062991|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_375:20339..21491 (Clytia hemisphaerica)
atGGCATCAAGGGGACAGTCTGAGACTGAAAAATTGCAACATAATCTTGA
AGAACAGCTTGATCGATTGATGAATCAGTTGAGTGACTTGGAAGAATGTC
GTGAAGATTTGGATGATGACGAGTATGaagaaacaaaacaagaaactttG
GAACAGcttaaagaatttcaagaatCACTCCAGAAACTTGTTGAGGGTAA
CATGACATTAGTTGATAAATTAGATGGGATGCAAATTGCAATACAGGCTG
CCATCTCTGAAGCATTCAAAACACCAGAAGTTATAAAAATGTTTGCCAAA
AAACAACCTGACCAACTGCGACAAAAGCTTGCTCAAATGCAGCGTGATGT
CGACCTTGGGAAATTATCAGAGGCAGCTTATAAACAACAGGGTGTTGAAA
TTCTTGCAGCTTTAAAAAAGTTGGGAGAAAATCTTACTCCAAAGGAGGTT
GAGTTTTTGCAGAAGAACTCCAATGCAGCTTTAAATTCATTTGAAACTGT
GACTTCAAATGTTGGTAATAAAGCGTTAAATATAGCGAGCTCAGATATAA
AACAAACAGAAAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039451XLOC_039451Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062991-proteinTCONS_00062991-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062991-exon-scaffold_375-1491911889:20339..21491TCONS_00062991-exon-scaffold_375-1491911889:20339..21491Clytia hemisphaericaexon
TCONS_00062991-exon-scaffold_375-1510915933:20339..21491TCONS_00062991-exon-scaffold_375-1510915933:20339..21491Clytia hemisphaericaexon
TCONS_00062991-exon-scaffold_375-1575043694:20339..21491TCONS_00062991-exon-scaffold_375-1575043694:20339..21491Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:20339..21491 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.0906	16.0352	24.5398	24.5734	42.8277	32.5425	23.1634	25.4199	24.1738	22.1814	19.4355	18.4174	19.3248	17.6916	28.1693	24.3107	26.3195	25.8495	11.4282	13.7857	24.62	22.7789	25.5086	25.2046	18.7792	24.3791	18.2716	13.0441	20.0049	20.7991
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009428ICAT
Vocabulary: Molecular Function
TermDefinition
GO:0008013beta-catenin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008013 beta-catenin binding
Blast
[Close]
BLAST of TCONS_00062991 vs. Swiss-Prot (Human)
Match: LZIC (Protein LZIC OS=Homo sapiens GN=LZIC PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.802e-62
Identity = 120/188 (63.83%), Postives = 152/188 (80.85%), Query Frame = -1 
Query:  326 MASRGQSETEKLQHNLEEQLDRLMNQXXXXXXXXXXXXXXXXXETKQETLEQLKEFQESLQKLVEGNMTLVDKLDGMQIAIQAAISEAFKTPEVIKMFAKKQPDQLRQKLAQMQRDVDLGKLSEAAYKQQGVEILAALKKLGENLTPKEVEFLQKNSNAALNSFETVTSNV--GNKALNIASSDIKQT 883
            MASRG++ET KL+ NLEEQLDRLM QL DLEECRE+LD DEYEETK+ETLEQL EF +SL+K++ GNMTLVD+L GMQ+AIQAAIS+AFKTPEVI++FAKKQP QLR +LA+M RD+ +GKL    Y QQ VEIL AL+KLGE LT  +  FL  N+ A L+ FE V++++  G+K L +AS ++++T
Sbjct:    1 MASRGKTETSKLKQNLEEQLDRLMQQLQDLEECREELDTDEYEETKKETLEQLSEFNDSLKKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLSANAGAILSQFEKVSTDLGSGDKILALASFEVEKT 188
The following BLAST results are available for this feature:
BLAST of TCONS_00062991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LZIC8.802e-6263.83Protein LZIC OS=Homo sapiens GN=LZIC PE=1 SV=1[more]
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