TCONS_00061000 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061000
Unique Name	TCONS_00061000
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1286

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_352:100692..108833+

transcript sequence

>TCONS_00061000 ID=TCONS_00061000|Name=TCONS_00061000|organism=Clytia hemisphaerica|type=transcript|length=1286bp
aaaaggaaagtgaacgatattctttgaaggaaaaacatcagaaacaaacc
caaagatcAAAAGacgtattttgttgttgagaatcgatcctgtgaagatg
aaaacaTTTCTGCTATGCgcttttttcggaacgctgaaaaactctaattt
caatcttccttaagTCACCACATGGGTCAAGAAACAATGAAGGTCTCTCG
CAAACTTCATGGAATGAATAGGGACAGATTGGTAACAGAATTGAGGAACG
ATGAAAACACAAAGAGTGGAATAGTTGTTATACAAGGAGGCGAATCTGAA
ACACTTCATTCAAGTGACAGAGAGGTCGCATTTCGACAGgAATCATACTT
TCACTGGGCATTTGGATGTCGAGAGCCAGACTGTTATGGTGCAATTGAAG
TTGATACAGGAAGATGCATTTTATTTGTTCCTGAACTTCCTCAAGAATAT
ATTGTTTGGATGGGACAAATCCATCcaaaagaacattttcagaaGCTCTA
TGAAGTAGATGAAGTTTATTTTACAAACGAGATTGCCAAAGTTCTTGAAG
ATAAAAAACCGAAAACACTATTAACATTGAGAGGGCGAAATACAGACAGT
GGTAAATATACGAAAGAAGCTGCATTTGATGGTATCAGCAACTTCACAGT
GAACAATGAAATTCTTTTCCCTGTAATGTCGGAATGtcGTGTATTCAAAA
CTGAATATGAGTTAGACGTCATCAGATATGCAAATAAAATCAGCAGTGAA
GCACATAAAGAGGTGATGAAACATATTCGACCGGGAATGACTGAATACCA
ACTAGAAagTTTATTCCAACATTATTGTTATGTTCGCGGAGGATGTCGAT
TTCTGGCATATACCTGTGTCTGTGGAAGTGGTACAAACTCGGCAACATTG
CATTATGGACATGCAGGTGCGCCTAATGATAAACTGATTCAAGACGGTGA
TATGTGtttATTTGATATGGGAGGTGAATATTACTGTTACACCTCAGACA
TCACTTGTTCTTTCCCAGCAAATGGAAAGTTTACAGAACAGCAGAAGGGA
ATTTATAATGCGGTTTTGAAATCGAGTCGAGCTGTTTTGAACAGCGTAAA
ACCAGGGGTCAGTTGGAAAGAAATGCACTTACTTGCCGACAAAACAAACT
TGGAAGAGATGAAGAAACTTGGAATCGTCCAAGGAGATGTCGATGAAATG
ATGAAAGTTCGTTTAGGTGCTGTCTTCATGCCTCATGGCTTGGGACATTT
TATGGGCTGTGATGTCCATGATGTTCATGGATACCC

Run BLAST on NCBI

transcript from alignment at scaffold_352:100692..108833+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061000 ID=TCONS_00061000|Name=TCONS_00061000|organism=Clytia hemisphaerica|type=transcript|length=8142bp|location=Sequence derived from alignment at scaffold_352:100692..108833+ (Clytia hemisphaerica)
aaaaggaaagtgaacgatattctttgaaggaaaaacatcagaaacaaacc
caaagatcAAAAGacgtattttgttgttgagaatcgatcctgtgaagatg
aaaacaTTTCTGCTATGCgcttttttcggaacgctgaaaaactctaattt
caatcttccttaaggtaaagaggttgcaagatttgggttagcgaggcaaa
aatcgctaaaaagctggtaaaatcgtaatcctcaaaaatcaaagttccag
cctcactgtttTGGCTTTACCACCCTCAGAGCAGTAGGCACCTCTGTCAN
CAGCCTCACTGTTTTGGCTTTACCACCCTCAAAGCAGTAGGCACCTCTGT
CATTccgcaactctgtccaccattCTAAATGGCttgttaacaatagatcc
aaatgATCCTTTGAGGCAAAATCAATTtcaggaaaagctggaaaatcATA
GAAacttccaaaaattgaaaatgcatGAGAAATCAAATTGTTCAAAAGTT
GTCTCTACTCTAAATCAtcataattaaaattttttgatgctTCTATCATG
TAGTCACCACATGGGTCAAGAAACAATGAAGGTCTCTCGCAAACTTCATG
GAATGAATAGGGACAGATTGGTAACAGAATTGAGGAACGATGAAAACACA
AAGAGTGGAATAGTTGTTATACAAGGAGGCGAATCTGAAACACTTCATTC
AAGTGACAGAGAGGTCGCATTTCGACAGGTAAATATatttatattaaata
tataGATTTATTTAAGCCATTTTCACTAACAAAGTATTCATTCAACTTCG
CATTCCCATGCAAATGGTTCTagcaaagtgtttttttttttacatacaaG
TTGAAAAGTTATAACTTAGAATTAGAATTTCTACAGTTTGACAGTTCAAA
GCTAACAAAATGATATCATGTAAAGCTATATAGTTAAAATTTCTTGACAC
TTTGACAGGGTATACTGTTTTGCTTTTCCAGAATAGAGCTACTACCAGTA
TCATATtccaatcaatttttttcattcaaggAATCATACTTTCACTGGGC
ATTTGGATGTCGAGAGCCAGACTGTTATGGTGCAATTGAAGTTGATACAG
GAAGATGCATTTTATTTGTTCCTGAACTTCCTCAAGAATATATTGTTTGG
ATGGGACAGTATGAGATTTTGTTTCTATCATCTTTTTATATATAGCACTT
AAAATAATGGTGGGACATGggcattgtccgacccaaatagctCCTTGTCC
AACCCTAgaattataatttttataattttctctAATCAGACATTTTTTGC
GATCActtatttttttaagcttatgagtTATTCCAAGCCATCTTTATATT
AATGAGCATAGAATTTCTAATAGACAGACTATTTGGATTAAGAAAAAGTA
TGATATAATATACATTATTGAATCTGAAAATCTAGTTCCACTGTTTGTTT
TCTAGAATCCATCcaaaagaacattttcagaaGCTCTATGAAGTAGATGA
AGTTTATTTTACAAACGAGGTAtgcctttcaattttttgagaaaCAAGAC
AATCTTTCATCGGATAGATTCTTCTGGAGAACCGTAAATCGAGACCAGAA
AAAAACCTTTTATACGCTTTCTACATGAATGAAATAATGACATCATTTTG
ATAAATCATTGCCTTGTCTTTAGATTGCCAAAGTTCTTGAAGATAAAAAA
CCGAAAACACTATTAACATTGGTAAGAAAAATTGATCTCAGTTAAATCAA
CTCCCAAAGATCTCCAAAAATCTTCATTGATTCACTATTCAAAATATGAT
CTGTTAACTACACCAAGAATGGATTAAAGGATTTCTTGTGGGAAATTACT
CCAAAATCAAAGCATTTGCTAAGATTCTTATAAGTGATTACTAGaaaatt
gtatttatttttgaaaattacttaCCATTGAGGTCATTTTTGGGTAaatt
ccatacaggggggtggacgaaccttttcaagtcaaaacaaaTTACTTGGA
AATGTGTGAATACCCCTtgtaaaatggcaaaatttgcaaaaaagaccctg
gaaaaaattattttcatgtcttgaagtgagggtggacgaactaatatttt
accccctggaagttCAAGAATAGCTTTTTACCCcttgaaagaatgacaaa
acaCTTCTTTAGACTTTCTGGAAATTCGTTTCAGATTACCCCCGGAAAAA
TTTCgaccaccccctgtatggatataaaatggaatggcccattttggcTT
TTGTAGCAAGTACATTCACTGAGTTGATAAGTTAAAACTTCTGAACAAAA
TACTGTCTTTGTTGTTTGAAAGAGATAGGAAAcacataaatataaaaaca
taattGAAATACTCAAAATATTTGTCTTAATGTAATTTCACAGAGAGGGC
GAAATACAGACAGTGGTAAATATACGAAAGAAGCTGCATTTGATGGTATC
AGCAAGTATGACacatttttagacttatttTGCTGGAAACTAAACAAGAC
ACTCTTTAGGACTTTTTTCGCCCAAAAATGGATTACTTTTCGTAAAAGTT
TTAAGAAAGGTGCATCAGGATTCAAAATTTGACAAATCTATTTCTCTTTT
GTTAGtacttactcttgtctcccgaatagacgtcccccttgctaattgtt
aagagaaaaaaatccatccccccgctcttattaagacccccctcCTGcta
atcaaattcaaaaaattcaatattttattactgtgtagatagaccttaaa
aaaacttgttaaaatttttctttttttagtattggttcttattttacgtg
ttcatttgttaaagttttttgttgttgttgaaattgatatcagttaaaaa
aattctgtcttcaaattaccccctccctcttattccatccccctgCTTAt
aagaatttagaaaaatttcctaccccctgcttatttgggcccccgtctat
tcgggagacaagagtacctACTTTGTGAAGTCAATTAacttcttttgttg
tttttatgtaATTCTGTGTTAAGAAATTTGGTCGttgatctttatttttc
tagcaaataaaacttttaaactttcttttttagCTTCACAGTGAACAATG
AAATTCTTTTCCCTGTAATGTCGGAATGGTAAGATTTTTTCCTGGTTAAA
CATGAATTCCGGTTAGATATTCTAGCTTATAATTTTTCCACTGCGTCTCT
TCTTATAACCTTTTAAATCTaagtcaaaaataatcatttttgaaaactat
aaaATCACGCAAAAATGAGGTAATAAATTTCATGAATAAGAAAAAGGTTC
TGTACAGTCTACAGTCGTGGTAAGATATTGGGAAACATAGCGTACTTATT
TTCTTGGAATAATGATACAATCGTAAAAATACCTTTTAGGGAAAAACTTA
TTTGGGTAAAATTTAGTCACACAGGTAAAATTTAAGCCAGGAAAGATTTC
GTCACTTTTGTGAATGTCTTGGCCACGACTCATTTGAAGTTGACTAGAAA
GGTTGCCGTGGAAAACTTCGTCACTTGTGTAAGCACTTTATAGAAACcct
tataatttttatttcattttagtcGTGTATTCAAAACTGAATATGAGTTA
GACGTCATCAGATATGCAAATAAAATCAGCAGTGAAGCACATAAAGAGGT
TAGAGATGacgttttttcatttctttttgtttatttctataGAAAAACCT
ATCGATCTAATTTAAAAGGCCTAACAACACTTACTGTGTCTTTTTCCAAT
AACAAGCTATTTTTCGAATCTTCAATGGAAATGTTTTGTTAAACCTTCAA
AGGACAATgtattttttggatgtttttaatcTCTGTGACCTCATTTCATC
AGGTGATGAAACATATTCGACCGGGAATGACTGAATACCAACTAGAAagg
taaaattcaaaatttttgaagcctttagatgttcttgacttttttagttt
taagcctaaaaatgttcttaacatgttcttgttttcgccattttttgagc
atttttgtcatttttcttaagaaatcaggttctttagagtccgcgaagtc
ttaaaatgttcttaatatgttcttaacattttagccatcaaagcctcatg
ttcttatatagtttgttcttataaaaaaatgtgtatactAATTCCCTTGA
GAGCGGGTTTCACATGGCGGCAAAGTAGAGTGCACAGTAAAATCAAATGA
ACTTTAGCTCTCTTGATCTAGATGTTTTTAGTAATTGAATCTGTTTTGAA
AAACAGCTCCCGAAATAAAGATGGGGTTCTTTGGAACTCTTAACTGTACA
TCTTGAAATATAAGTCATCTCATTTTATACGGAGGATCAGTCAATCTATT
AAATATGTATTTCATGAACGTAAGTGGTTTTGAAACTTCACCGAGCAATA
CTAGagtataaaaaaaaagaagaaatagtctagcaagctagacgactaat
tcagacatagtagacaTAAAGCAagaagtaatggagggaacaagttaaat
cccgtaacaataatcgtattatcatataaacGACCCCATTCTACTTGTAA
AAAAGTTTATCCTCCAAATTTGCTTTTCAGTTTGTTTCAACATTACTGTT
ATGCAAGAGGAGGGTGTCGATTTGTTTCCTACACTTGTATTTGTGGAAGG
TATGTCATTCGAgttcattttcatatttttttacaGTTTATTCCAACATT
ATTGTTATGTTCGCGGAGGATGTCGATTTCTGGCATATACCTGTGTCTGT
GGAAGGTatcttttaaagggacataaaagtactgacgaaatttgtaaaca
aaccgcatgcagcgggatacaaaatcaaaacaaatgtcacatgtcaaaat
aaaaaacaaaacaaacatggctgattttgattgtttcaattgttttgcga
gtttgttttggacacgtgattttaattgttctcttttaTGACACGttgtt
cgcgcaatgtttacattttactacttttatgtccctttaaactttgtgat
ttttttttaagttttcagCTTTTTGACGATCTAACTTTTAACTCTTTTGG
GATAAAATAGATTTGTTGATTTGAAGTTCCTACTTTCCACCTatttatca
aagaaaaaacattgagTGACTTGCACTGGCACTCTTGAACCTACACTGAA
AGAATCACGGAAATCATAAAAgataataacaaaaataatagTTCTTAATT
CAAAACTTTGCTCATATAAGATTTTGAAATTGCAATGAAAGACTAAAAGC
AGATCAGGTGCACTTATCGGTACCCAAGGTAACATTCTATACCAGTGAAA
TCTGGTCAGTAAATTGAATAAAAGCATTCTTAGTTAACATTTTTTACCAG
CGTTTTTACTGGTAAAATGCTACATTGGGTACCCATAGGTGCATCTGATC
CTTAAAAGCATTATCTACATAATTTCCCAGACCTTAAGCAACTTTCTGTG
CAATATTTGATACAGTCAAGAAGCTTGATATCGACGAGTGAAGCTTTTAC
AAAGTAGGCATCTTGGCCTGCTTGGCTATGTTCAAATGGTACAAGTACTT
AACtttgtttctttctttatcCTTTAAGTGGTACAAACTCGGCAACATTG
CATTATGGACATGCAGGTGCGCCTAATGATAAACTGATTCAAGACGGTGA
TATGTGGTGAGTTTTTGCCCCATGTTTACATCTAAACCTTACCATTAGTA
AGGTTTCTGGACACATCATTTAAATCAAagtctttcgaaaaaaaaaataa
ttatggtATTCTGTAGGTTTGCAAAATTACAGCCTCCTTTATCTACTTCT
CTTCAGCCTTGGTAGTATTTTATTGAGGACTGAAATTTGTAGATTTAATG
ATTTTTCGACACTGTAGTACCCTTTTATGCTGGAAGAACATACCCATTTA
CCCATTGCTATACGTTTTCCCAGGCAAACCCTTAGGTTTAAGGCAGTTTT
TAAGCTTTAAATTAAAGATAAAGTGGCTGTAGCTTGGGGAAAGAGCATCC
AGCTACAGTACACAACCACAGATATCTGTAAAGCccgaagggctagattt
gcggccttggtcaaaaagtgaagctcatctttggaaggatttcctaccag
agtcacgtgactaaaatatgcaatttcaccggtatgagagatgcgaaata
gcgtttgccgcctacgttttttgatctcgcgctccgaaaacaattaaaat
gctagatcctatccatcggcacgaaatttaaaaagtcaaatttttgcttc
acttttttttgctggagaaagcttaaagttgcctatctagcccttcgggc
ttagatatctgtgtaCACAACACAACCTtgtgcaccgtagctggatgcca
GCCAGGTCATACCAAAGGTAACAAAATGGTAATTGATATCTCTCTGCTTG
TTGgacagcaactaaagagacggatcaaagGTAATGGAGAAATTCAGGGA
AAGGaatggcgccctcccctaccttcaggtagaaacttagagaaaaggga
gccttcagGTTGCGTCCGACTGTGGTCGCAGACTGACTTATTTTAGTCTT
AAACCtattattgaaaataaagagggaaagtataatttttatattttgtt
ttcatattttcagtttATTTGATATGGGAGGTGAATATTACTGTTACACC
TCAGACATCACTTGTTCTTTCCCAGCAAATGGAAAGTTTACAGAACAGCA
GAAGGGAATTTATAATGCGGTTTTGAAATCGAGTCGAGCTGTTTTGAACA
GCGTAAAACCAGGTAATAACTCTCTTCCTAAGTTAAACTGTTTGGCTCTT
ATAATCAAAGAGCAAATGTGATTTAAATGAAGGGAGGGTTTAGCTATAGG
GATATAATATGATACACTAGAGTCTTCATAaatcgaacctctataattcg
aatatctccttaactcgaaaaagtgaTCCCTTCAGTTACCagtctccgta
actcgaaatttccaaaattcaaacaaattcgTTTTCCCCATGCtcgtttg
agttatggagacgcCACTGTATATGAACATAATATGGAATAGGCTAGCAG
AGTTAAgaccctaaaatagcttttaataTACCCAGGGTCGTTGTTGTTGg
atgatttttgaagattttttgcaTGTGCAAGTCATGATACGGTCAATTGA
TGTTTTGTAACATTAAAGTGTATTAAAAGTGTATTAAGAATCTCTTTGGC
TATAGaggtcccggggggggggggggtactaggttttgCGAGGTTTGCta
ataattgaaaaaatatatcataTGTCTGAGCGAAATTTCTAAAATCGATC
CTTTGAGAACTGAATTTCGATGTTTATGCCTCTCTTTGAGaaactatttt
ttcaatttgtaGCTCAAAATAACCAgattttatgaccctttgagggagtc
gatttttgatatttcataattttggaccctttcagagacttaattgctcg
cacatacccgacatCCCCCCCCGGGTAGAGGTTTTTCAGGTTGACAAAGT
TACGTAGTTACCATTATGgaagaaaacattgattttttCGCAAGGAGTTG
TCTCtacaaattcgaaaaatgttacacgtttttttaagaacatccaaatt
ttttgaagccttcggatgttcttaactttttgagttttaagccatgtttt
atgttcttatttttgtcattttgtgagtattttagtccaatttcctaaga
aattggtcgtttagagtccgcaaaaccttaaaatgttctaagttgttctt
aatattttggccatcaaagtctaatgttcttatatagtttgttcttgtaa
aaaaaatgtgttattTTTCTAAGGGGTCAGTTGGAAAGAAATGCACTTAC
TTGCCGACAAAACAAACTTGGAAGAGATGAAGAAACTTGGAATCGTCCAA
GGAGATGTCGATGAAATGATGAAAGTTCGTTTAGGTGCTGTCTTCATGCC
TCATGGCTTGGGACATTTTATGGGCTGTGATGTCCATGATGTTCATGGAT
ACCCTGATGTAAGTTTTCTATAGAAAAGGTTGTTAAAATTGTTTGAGATA
TCAAGACAAAATAAAGGGTAACGGTCTGTCTTCATGCCTCATGGTTTGGG
TCATTTTATGGGCTACGATGTCCATGATGTTCATGGATACCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038294	XLOC_038294	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_352	supercontig	scaffold_352:100692..108833 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.26254	1.43051	0	15.2127	8.35232	15.2412	12.1835	7.39775	10.8536	3.14227	4.65133	3.47335	1.55015e-09	0	4.1701e-10	3.7152e-07	2.06955	0	0	0.00205135	0.788422	0	0.000699782	19.6261	21.4157	0	0	0	0

Blast

[Close]

BLAST of TCONS_00061000 vs. Swiss-Prot (Human)
Match: PEPD (Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 SV=3)

HSP 1 Score: 515.383 bits (1326), Expect = 1.017e-179
Identity = 238/375 (63.47%), Postives = 288/375 (76.80%), Query Frame = 1

Query:  163 SHHMGQETMKVSRKLHGMNRDRLVTELRNDENTKSG-IVVIQGGESETLHSSDREVAFRQESYFHWAFGCREPDCYGAIEVDTGRCILFVPELPQEYIVWMGQIHPKEHFQKLYEVDEVYFTNEIAKVLEDKKPKTLLTLRGRNTDSGKYTKEAAFDGISNFTVNNEILFPVMSECRVFKTEYELDVIRYANKISSEAHKEVMKHIRPGMTEYQLESLFQHYCYVRGGCRFLAYTCVCGSGTNSATLHYGHAGAPNDKLIQDGDMCLFDMGGEYYCYTSDITCSFPANGKFTEQQKGIYNAVLKSSRAVLNSVKPGVSWKEMHLLADKTNLEEMKKLGIVQGDVDEMMKVRLGAVFMPHGLGHFMGCDVHDVHGY 1284
            S  +G ET+KV   L  +NR RL   LR +   ++G IVV+QGGE    + +D  V FRQES+FHWAFG  EP CYG I+VDTG+  LFVP LP  +  WMG+IH KEHF++ Y VD+V + +EIA VL  +KP  LLTLRG NTDSG   +EA+FDGIS F VNN IL P + ECRVFKT+ EL+V+RY NKISSEAH+EVMK ++ GM EY+LESLF+HYCY RGG R  +YTC+CGSG NSA LHYGHAGAPND+ IQ+GDMCLFDMGGEYYC+ SDITCSFPANGKFT  QK +Y AVL+SSRAV+ ++KPGV W +MH LAD+ +LEE+  +GI+ G VD M++  LGAVFMPHGLGHF+G DVHDV GY
Sbjct:    8 SFWLGNETLKVPLALFALNRQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDEIASVLTSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGY 382

The following BLAST results are available for this feature:

BLAST of TCONS_00061000 vs. Swiss-Prot (Human)

BLAST of TCONS_00061000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PEPD	1.017e-179	63.47	Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 S...	[more]

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TCONS_00061000 (transcript) - C. hemisphaerica