TCONS_00060914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060914
Unique NameTCONS_00060914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060914 ID=TCONS_00060914|Name=TCONS_00060914|organism=Clytia hemisphaerica|type=transcript|length=589bp
aatacagTGAAGAGGGACAGGTCAAGTACTTATAAACAATACACAGATCG
ATCGAaatgtttttcacttttttcatagtgaatggattataaaataataa
cataatcaatttgatcgaagctacaaagacacaaaaagctagTCAGATAA
ATCAATTTCTGGCTCCTCCTCTTGGCTCTTTTTGTgtaattcaattgtgt
aatttacagagcaATTTCAACAATTCTAACGCTCTTTTTAGCCTAGAGGC
TAAATGTCTAAATCTGCGAGAACTGATTTTAAAGAGTGTCatataaaaaa
tgaacattccaatcacagggatttccccagagacaagatgtttacttttc
gaattcaaaattcgaatgaaaggaaaacattcgaatcgacaACAAAGGGT
TACACTCATGCTGAGGGGAAAGCCCTTTATTACaattagaatgttttctt
ttcattcgaATTCAAAATTGTGTTTCTGGGGAAACccctctaattcgaat
gattacTTTGTTATTCTCAATAAATATAAACTCTTCGAAATATAGTCAGG
CTGCTGCTGGACCACTTTTGTAAAAACCTTAGTGTGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_349:801579..802167

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060914 ID=TCONS_00060914|Name=TCONS_00060914|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at scaffold_349:801579..802167 (Clytia hemisphaerica)
CTTCACACTAAGGTTTTTACAAAAGTGGTCCAGCAGCAGCCTGACTATAT
TTCGAAGAGTTTATATTTATTGAGAATAACAAAgtaatcattcgaattag
agggGTTTCCCCAGAAACACAATTTTGAATtcgaatgaaaagaaaacatt
ctaattGTAATAAAGGGCTTTCCCCTCAGCATGAGTGTAACCCTTTGTtg
tcgattcgaatgttttcctttcattcgaattttgaattcgaaaagtaaac
atcttgtctctggggaaatccctgtgattggaatgttcattttttatatG
ACACTCTTTAAAATCAGTTCTCGCAGATTTAGACATTTAGCCTCTAGGCT
AAAAAGAGCGTTAGAATTGTTGAAATtgctctgtaaattacacaattgaa
ttacACAAAAAGAGCCAAGAGGAGGAGCCAGAAATTGATTTATCTGActa
gctttttgtgtctttgtagcttcgatcaaattgattatgttattatttta
taatccattcactatgaaaaaagtgaaaaacattTCGATCGATCTGTGTA
TTGTTTATAAGTACTTGACCTGTCCCTCTTCActgtatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038244XLOC_038244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060914-exon-scaffold_349-1491911889:801579..802167TCONS_00060914-exon-scaffold_349-1491911889:801579..802167Clytia hemisphaericaexon
TCONS_00060914-exon-scaffold_349-1510915933:801579..802167TCONS_00060914-exon-scaffold_349-1510915933:801579..802167Clytia hemisphaericaexon
TCONS_00060914-exon-scaffold_349-1575043694:801579..802167TCONS_00060914-exon-scaffold_349-1575043694:801579..802167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:801579..802167 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.29995	1.81548	2.49288	2.11064	6.05898	4.62829	7.02809	10.5086	4.87799	4.11207	4.34348	3.27218	3.12301	3.72121	2.36154	2.41334	2.16003	1.671	2.91158	3.48855	5.20228	5.05792	3.24749	4.32151	1.92971	4.62087	7.86403	12.3063	3.84593	3.73924
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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