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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060777 ID=TCONS_00060777|Name=TCONS_00060777|organism=Clytia hemisphaerica|type=transcript|length=2828bpRun BLAST on NCBI protein sequence of TCONS_00060777-protein >TCONS_00060777-protein ID=TCONS_00060777-protein|Name=TCONS_00060777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp MPQKRSQIADDKEENIPAGKRIKTEDKQQESVTWQWEDDGHVWTDFSTDIRun BLAST on NCBI transcript from alignment at scaffold_349:280403..301075+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060777 ID=TCONS_00060777|Name=TCONS_00060777|organism=Clytia hemisphaerica|type=transcript|length=20673bp|location=Sequence derived from alignment at scaffold_349:280403..301075+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_349:280403..301075+ >TCONS_00060777 ID=TCONS_00060777|Name=TCONS_00060777|organism=Clytia hemisphaerica|type=CDS|length=28821bp|location=Sequence derived from alignment at scaffold_349:280403..301075+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060777 vs. Swiss-Prot (Human)
Match: PARP2 (Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=PARP2 PE=1 SV=2) HSP 1 Score: 490.73 bits (1262), Expect = 1.135e-161 Identity = 270/500 (54.00%), Postives = 367/500 (73.40%), Query Frame = 2
Query: 821 KTVKSIAFKGKAPVDSECPNK-DKYHVYFEGTDIYDAMXXXXXXXXXXXXFYLMQVLQSNTGKGYAVWFRWGRVGMTGQKNFINCGADLEKAXXXXXXXXXXXXXNEFWERKKFQKVSGKYDFLIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL--QALVELLCNIKEMEEAVMEMKYDTKKAPLGKLTKEQIKAGYKALKKIDQCITNKKSDNELILACDAFYTRVPHCFGMRRPPVIRTKADVKMKIELLETLGDIEIALKVIQDEGKGLMNPIDQHYFNLKCDFKILDRSCEEFGIVDKYTQNTHATTHNQYKMEVLDVFAFEKCEQNKAEFKDVGNRMLLWHGSRLTNWVGIISQGLRIAPPEAPVTGYMFGKGVYFADMSSKSANYCYPTRSKNVGFVLLCEVSLGKSNXXXXXXXXXXXXPVGCHSTRGMGKTAPDSKDNHVMSDGLIVPIGKPVDTGVNNPNGYTLNYNEYVVYDTSQIRAKYLVQLKFNF 2311
++VK++ KGKAPVD EC K K HVY EG D+YD MLNQTNL+ NNNK+YL+Q+L+ + + ++VW RWGRVG GQ + + C +L KAK+ F +KF DKTKN + +R+KF+KV GKYD L MDY +D+ + ++ K + L Q L++L+CN++ MEE +MEMKY+TKKAPLGKLT QIKAGY++LKKI+ CI + L+ AC+ FYTR+PH FG+R PP+IRT+ ++ KI+LLE LGDIEIA+K+++ E + +P+DQHY NL C + LD EF ++ +Y Q+THA TH+ Y M +LD+F EK + +A +D+ NRMLLWHGSR++NWVGI+S GLRIAPPEAP+TGYMFGKG+YFADMSSKSANYC+ +R KN G +LL EV+LG+ N+LL A+ A+ L G HST+G+GK AP S + V +G VP+G DTG+ NP+GYTLNYNEY+VY+ +Q+R +YL++++FNF
Sbjct: 81 ESVKALLLKGKAPVDPECTAKVGKAHVYCEGNDVYDVMLNQTNLQFNNNKYYLIQLLEDDAQRNFSVWMRWGRVGKMGQHSLVACSGNLNKAKEIFQKKFLDKTKNNWEDREKFEKVPGKYDMLQMDYATNTQDEEETKKEESLKSPLKPESQLDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRALMEACNEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGEKEAFREDLHNRMLLWHGSRMSNWVGILSHGLRIAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSA-HFVTLNGSTVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 579 The following BLAST results are available for this feature:
BLAST of TCONS_00060777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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