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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060756 ID=TCONS_00060756|Name=TCONS_00060756|organism=Clytia hemisphaerica|type=transcript|length=1653bp
atttttcagcatGAGCAATAGacagacaaaaaattaaaattgtcaatACA
TAAATCTGTATAAATAAGACACAAAAGGAGCTTCTGAAACAATAATGGTG
AATTATAGTGTTGAAATTCTTGCCAAAGTGGTATGCGTTGGGATGGTGTT
ATTCCAGGGATTAATGTTTAATGGCTACATGGTATTGTTCCATAATTCTT
TATGGTGGTTATGGAGTATAGTTGATGGTCTCTTGATTTTGTCATGGACT
ATTTTATTGGTTGTGGTATGGAGAGCTTAccgtaaaaaagaaaaagcaaa
agaaacCCAAGACTTGGTGGATGGAGTAGATTTAACTAAATTTCCAGATG
AAATCAAGTATGCGTATATTGTTTGGATTGTATATGCATTATGTCTGGTA
CCTCGCCTTATCATTCTATATCGCAGAGATGTCTCGAATTTGTTGGAGAA
AAATATATTGGGTcccaatttttgtaaaattgctACATCCTGTACGCCAT
TGATATTCATGCTTTTGGTGTATGCTTTACATGATGCTAAACAAGTTGCA
ACtagaaaatatttcttagcaTCAATGGTTGGGTCTGTAACCTTAGATTT
GTTTGACAGCATTGATTTGCTTGagtttttattcgaaaaagaAGACCAAC
GATTATACCCTCGACCAATTTTAGATGCTACCCTCGCATTTGCTTGCATC
AATATTTTTCTTCCATCATTAGCATTAATGGAGATTAAAGTGAACAGATT
TGATGGACAGGTTGGATCGCTACCGTTCAAAATCTTTTATGAGGGGTGCT
TCGTTTTCCTTGTAAACATACCAAATTTATTGATTCGTTCTATATTATGG
CATCAGTATAACGCTGACGTGTCTGTCCTTATCATGAAAAATGTAATGTG
CATTTGTTTGGGATTAGGAGAAATTATACGTTATTTTACAGAGGAAAGAC
CAAAGCAGTGTCCTAAATGTGGGTTGTGGTATGAACGAGAATTTTATGAT
AAACATTTTGCAAGTTGTACTGCTATGGAACGAACTCCTCTAAATCAGGA
ATTGTGAAATTGATGTTTTTCCAGGGAATGATACAACTCTTGGCCTTGTT
TATTAAGGGCTTCGTTAATTTTTGTTATGGAATTTtgatggttttcaaaa
tttccttttaaATTACATTGGTTATACGAATTTTGGATTTAACAAAACAC
TTGATCTTATTTTGAAATAGTTTCGACAGTGATATATTCAATCAATAGTG
ATTCTAAGTTGAATATGCTTAATAGTTATTTAATGTGgaattgattggtt
gaaattaTAGATATCAACAAATAACATCTTATGTTATTCTTGACATTGTC
AGATCTTATGACATGATTATGGACATTATTGAAACATTGACAACTCTCTT
GTATTGAAAAGAgaggatttttttaaagaattttatagaattgtgttttg
tttattgatctcacatttcaaatttttttaatttctattacatagggctc
ttccagaaaaaattcgttcagGGGGTGgagaatatatatatttttttaaa
atgatCTACCTAGACATAATGGATTACTATGGATAGTTTAAAAACAATAC
AGATTACACGtgtgttttgatcacgtgatcaaaatACAACATTTTCGTTT
GCG Run BLAST on NCBI protein sequence of TCONS_00060756-protein >TCONS_00060756-protein ID=TCONS_00060756-protein|Name=TCONS_00060756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MVNYSVEILAKVVCVGMVLFQGLMFNGYMVLFHNSLWWLWSIVDGLLILS
WTILLVVVWRAYRKKEKAKETQDLVDGVDLTKFPDEIKYAYIVWIVYALC
LVPRLIILYRRDVSNLLEKNILGPNFCKIATSCTPLIFMLLVYALHDAKQ
VATRKYFLASMVGSVTLDLFDSIDLLEFLFEKEDQRLYPRPILDATLAFA
CINIFLPSLALMEIKVNRFDGQVGSLPFKIFYEGCFVFLVNIPNLLIRSI
LWHQYNADVSVLIMKNVMCICLGLGEIIRYFTEERPKQCPKCGLWYEREF
YDKHFASCTAMERTPLNQEL Run BLAST on NCBI transcript from alignment at scaffold_348:490869..492521 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060756 ID=TCONS_00060756|Name=TCONS_00060756|organism=Clytia hemisphaerica|type=transcript|length=1653bp|location=Sequence derived from alignment at scaffold_348:490869..492521 (Clytia hemisphaerica)
CGCAAACGAAAATGTTGTattttgatcacgtgatcaaaacacaCGTGTAA
TCTGTATTGTTTTTAAACTATCCATAGTAATCCATTATGTCTAGGTAGat
cattttaaaaaaatatatatattctcCACCCCctgaacgaattttttctg
gaagagccctatgtaatagaaattaaaaaaatttgaaatgtgagatcaat
aaacaaaacacaattctataaaattctttaaaaaaatcctcTCTTTTCAA
TACAAGAGAGTTGTCAATGTTTCAATAATGTCCATAATCATGTCATAAGA
TCTGACAATGTCAAGAATAACATAAGATGTTATTTGTTGATATCTAtaat
ttcaaccaatcaattcCACATTAAATAACTATTAAGCATATTCAACTTAG
AATCACTATTGATTGAATATATCACTGTCGAAACTATTTCAAAATAAGAT
CAAGTGTTTTGTTAAATCCAAAATTCGTATAACCAATGTAATttaaaagg
aaattttgaaaaccatcaAAATTCCATAACAAAAATTAACGAAGCCCTTA
ATAAACAAGGCCAAGAGTTGTATCATTCCCTGGAAAAACATCAATTTCAC
AATTCCTGATTTAGAGGAGTTCGTTCCATAGCAGTACAACTTGCAAAATG
TTTATCATAAAATTCTCGTTCATACCACAACCCACATTTAGGACACTGCT
TTGGTCTTTCCTCTGTAAAATAACGTATAATTTCTCCTAATCCCAAACAA
ATGCACATTACATTTTTCATGATAAGGACAGACACGTCAGCGTTATACTG
ATGCCATAATATAGAACGAATCAATAAATTTGGTATGTTTACAAGGAAAA
CGAAGCACCCCTCATAAAAGATTTTGAACGGTAGCGATCCAACCTGTCCA
TCAAATCTGTTCACTTTAATCTCCATTAATGCTAATGATGGAAGAAAAAT
ATTGATGCAAGCAAATGCGAGGGTAGCATCTAAAATTGGTCGAGGGTATA
ATCGTTGGTCTtctttttcgaataaaaactCAAGCAAATCAATGCTGTCA
AACAAATCTAAGGTTACAGACCCAACCATTGAtgctaagaaatattttct
aGTTGCAACTTGTTTAGCATCATGTAAAGCATACACCAAAAGCATGAATA
TCAATGGCGTACAGGATGTagcaattttacaaaaattgggACCCAATATA
TTTTTCTCCAACAAATTCGAGACATCTCTGCGATATAGAATGATAAGGCG
AGGTACCAGACATAATGCATATACAATCCAAACAATATACGCATACTTGA
TTTCATCTGGAAATTTAGTTAAATCTACTCCATCCACCAAGTCTTGGgtt
tcttttgctttttcttttttacggTAAGCTCTCCATACCACAACCAATAA
AATAGTCCATGACAAAATCAAGAGACCATCAACTATACTCCATAACCACC
ATAAAGAATTATGGAACAATACCATGTAGCCATTAAACATTAATCCCTGG
AATAACACCATCCCAACGCATACCACTTTGGCAAGAATTTCAACACTATA
ATTCACCATTATTGTTTCAGAAGCTCCTTTTGTGTCTTATTTATACAGAT
TTATGTattgacaattttaattttttgtctgtCTATTGCTCatgctgaaa
aat Coding sequence (CDS) from alignment at scaffold_348:490869..492521 >TCONS_00060756 ID=TCONS_00060756|Name=TCONS_00060756|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_348:490869..492521 (Clytia hemisphaerica)
TCACAATTCCTGATTTAGAGGAGTTCGTTCCATAGCAGTACAACTTGCAA
AATGTTTATCATAAAATTCTCGTTCATACCACAACCCACATTTAGGACAC
TGCTTTGGTCTTTCCTCTGTAAAATAACGTATAATTTCTCCTAATCCCAA
ACAAATGCACATTACATTTTTCATGATAAGGACAGACACGTCAGCGTTAT
ACTGATGCCATAATATAGAACGAATCAATAAATTTGGTATGTTTACAAGG
AAAACGAAGCACCCCTCATAAAAGATTTTGAACGGTAGCGATCCAACCTG
TCCATCAAATCTGTTCACTTTAATCTCCATTAATGCTAATGATGGAAGAA
AAATATTGATGCAAGCAAATGCGAGGGTAGCATCTAAAATTGGTCGAGGG
TATAATCGTTGGTCTtctttttcgaataaaaactCAAGCAAATCAATGCT
GTCAAACAAATCTAAGGTTACAGACCCAACCATTGAtgctaagaaatatt
ttctaGTTGCAACTTGTTTAGCATCATGTAAAGCATACACCAAAAGCATG
AATATCAATGGCGTACAGGATGTagcaattttacaaaaattgggACCCAA
TATATTTTTCTCCAACAAATTCGAGACATCTCTGCGATATAGAATGATAA
GGCGAGGTACCAGACATAATGCATATACAATCCAAACAATATACGCATAC
TTGATTTCATCTGGAAATTTAGTTAAATCTACTCCATCCACCAAGTCTTG
GgtttcttttgctttttcttttttacggTAAGCTCTCCATACCACAACCA
ATAAAATAGTCCATGACAAAATCAAGAGACCATCAACTATACTCCATAAC
CACCATAAAGAATTATGGAACAATACCATGTAGCCATTAAACATTAATCC
CTGGAATAACACCATCCCAACGCATACCACTTTGGCAAGAATTTCAACAC
TATAATTCACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060756-exon-scaffold_348-1491911889:490869..492521 | TCONS_00060756-exon-scaffold_348-1491911889:490869..492521 | Clytia hemisphaerica | exon |
| TCONS_00060756-exon-scaffold_348-1510915933:490869..492521 | TCONS_00060756-exon-scaffold_348-1510915933:490869..492521 | Clytia hemisphaerica | exon |
| TCONS_00060756-exon-scaffold_348-1575043694:490869..492521 | TCONS_00060756-exon-scaffold_348-1575043694:490869..492521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:490869..492521 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032776 | CECR6/TMEM121 |
Blast
The following BLAST results are available for this feature:
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