TCONS_00060664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060664
Unique NameTCONS_00060664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060664 ID=TCONS_00060664|Name=TCONS_00060664|organism=Clytia hemisphaerica|type=transcript|length=341bp
cttgacAGAATTTTCCGGAGAATCCAGGCTTGCATTGACAAGTGAAAGAA
GCAATCCCATCTTTGCAGGTTCCTCCATTAAGACATCTGACGCGCTTGCA
ATCATCGATgttgtttttacagaattttcCATTGAATCCATTCTTGCATT
TGCAAGTGAAAGAAGCGATTCCGTCTTCGCAGGTTCCTCCGTTTAAGCAT
TTGACACCTCGGCAATCATCGATgttgtttttacagaattttcCATTGAA
TCCGTTCTTGCATTTGCAAGTGAAAGAAGCAATTCCGTCTTCGCAGGTTC
CTCCGTTTAAGCATTTGACACCTCGGCAATCATCGTCAtct
Run BLAST on NCBI

transcript from alignment at scaffold_348:32320..33002-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060664 ID=TCONS_00060664|Name=TCONS_00060664|organism=Clytia hemisphaerica|type=transcript|length=683bp|location=Sequence derived from alignment at scaffold_348:32320..33002- (Clytia hemisphaerica)
CTTGACAGAATTTTCCGGAGAATCCAGGCTTGCATTGACAAGTGAAAGAA
GCAATCCCATCTTTGCAGGTTCCTCCATTAAGACATCTGACGCGCTTGCA
ATCATCGATGTTGTTTTTACAGAATTTTCCATTGAATCCATTCTTGCATT
TGCAAGTGAAAGAAGCGATTCCGTCTTCGCAGGTTCCTCCGTTTAAGCAT
TTGACACCTCGGCAATCATCGATGTTGTTTTTACAGAATTTCCCATTGAA
TCCACGTTTGCATTGACAAGTGAAAGAAGCGATTCCGTCTTCGCAGGTTC
CTCCGTTTAAGCATTTGACACCTCGGCAATCATCGATGTTGTTTTTACAG
AATTTTCCATTGAATCCACGTTTGCATTGACAAGTGAAAGAAGCGATTCC
GTCTTCGCAGGTTCCTCCGTTTAAGCATTTGACACCTTTGCAATCATCGA
TGTTGTTTTTACAGAATTTTCCATTGAATCCATTCTTACATTTGCAAGTG
AAAGAATCGATTCCGTCTTCGCAGGTTCCTCCGTTTAAGCATTTGACACC
TCGGCAATCATCGATGTTGTTTTTACAGAATTTTCCATTGAATCCGTTCT
TGCATTTGCAAGTGAAAGAAGCAATTCCGTCTTCGCAGGTTCCTCCGTTT
AAGCATTTGACACCTCGGCAATCATCGTCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038147XLOC_038147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060664-exon-scaffold_348-1575043694:32821..33002TCONS_00060664-exon-scaffold_348-1575043694:32821..33002Clytia hemisphaericaexon
TCONS_00060664-exon-scaffold_348-1575043694:32320..32478TCONS_00060664-exon-scaffold_348-1575043694:32320..32478Clytia hemisphaericaexon
TCONS_00060664-exon-scaffold_348-1510915933:32821..33002TCONS_00060664-exon-scaffold_348-1510915933:32821..33002Clytia hemisphaericaexon
TCONS_00060664-exon-scaffold_348-1510915933:32320..32478TCONS_00060664-exon-scaffold_348-1510915933:32320..32478Clytia hemisphaericaexon
TCONS_00060664-exon-scaffold_348-1491911889:32821..33002TCONS_00060664-exon-scaffold_348-1491911889:32821..33002Clytia hemisphaericaexon
TCONS_00060664-exon-scaffold_348-1491911889:32320..32478TCONS_00060664-exon-scaffold_348-1491911889:32320..32478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:32320..33002 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.119644	0	0.165165	0.768923	0.891025	724.632	160.579	0	1.62095	0	0	0.310578	0	0.16454	0	0	0	0	0.281179	0	0
Blast
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BLAST of TCONS_00060664 vs. Swiss-Prot (Human)
Match: NOTC3 (Neurogenic locus notch homolog protein 3 OS=Homo sapiens GN=NOTCH3 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.627e-16
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = -2 
Query:    2 DDDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXNIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQ 340
            D +DC    CLNGG+C+DG+ SF+C C  GF G  C  ++D+C    C   GTC D +ASFTC C  G+ G  C+ ++ DC    C NGGTC DG+ SF+C C+PG++G  CQ
Sbjct:  849 DINDCDPNPCLNGGSCQDGVGSFSCSCLPGFAGPRCARDVDECLSNPC-GPGTCTDHVASFTCTCPPGYGGFHCEQDLPDCSPSSCFNGGTCVDGVNSFSCLCRPGYTGAHCQ 960
The following BLAST results are available for this feature:
BLAST of TCONS_00060664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOTC33.627e-1647.79Neurogenic locus notch homolog protein 3 OS=Homo s... [more]
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