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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060571 ID=TCONS_00060571|Name=TCONS_00060571|organism=Clytia hemisphaerica|type=transcript|length=748bp
TTTTGCTCACAGTGCTAGTGGGAGGAATGTGCACAAAGTTGCTGACAATC
AGCAAATTGGAAAGCTCAAAGAAGAACACCAAAAAGAGATTGAGAAACTC
AAAATGGAATTTAAGATTCAACAACTGGAATCTGAAAAcgaaaaaacgtt
gaaaatcatgcagctagaaaaagaaattcaaactttATCTCATCAATTTG
AGATGTTCAAATTAAAGAATTCTCATGATTCTCAATCAAGTCAAGTTCAA
GCCGATCAACAACTCCAAAAACAGAACGTCGAGCTGCAAAATAACTTAGT
TGAAAAGGAGAAACAATTAGTAGCCAAAGAGCACGAAATGGTTCTGTACA
AGAAAGAACAagaaaatgaatggaaaatgaaaatgaaaaatttggaaaat
gaacacaaaatcaaaatcttacaaaaagagacaaaatTGAACGAGATGGA
GAAAGAAATGACAGAGAAAGAAGCAACTGTCCaacattgggctattccag
aaaaaatttgtaccccctatgttgaggaggtctttttcGGGAAAAGtgac
accctggattttttttcaaattttcaagacccccctggattttttctcat
tttttagactaccctggattttacctCCTCAACATATAGTTCTGCAGTCC
CACAGCCCCCTTGGATTTTTCTAACACTAGACACCtttcttctcaatttt
ttagactaccctggattttacctCCTCAACATATAGTTCTGCAGTCCC Run BLAST on NCBI protein sequence of TCONS_00060571-protein >TCONS_00060571-protein ID=TCONS_00060571-protein|Name=TCONS_00060571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
FAHSASGRNVHKVADNQQIGKLKEEHQKEIEKLKMEFKIQQLESENEKTL
KIMQLEKEIQTLSHQFEMFKLKNSHDSQSSQVQADQQLQKQNVELQNNLV
EKEKQLVAKEHEMVLYKKEQENEWKMKMKNLENEHKIKILQKETKLNEME
KEMTEKEATVQHWAIPEKICTPYVEEVFFGKSDTLDFFSNFQDPPGFFLI
F Run BLAST on NCBI transcript from alignment at scaffold_344:346774..347521 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060571 ID=TCONS_00060571|Name=TCONS_00060571|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at scaffold_344:346774..347521 (Clytia hemisphaerica)
GGGACTGCAGAACTATATGTTGAGGaggtaaaatccagggtagtctaaaa
aattgagaagaaaGGTGTCTAGTGTTAGAAAAATCCAAGGGGGCTGTGGG
ACTGCAGAACTATATGTTGAGGaggtaaaatccagggtagtctaaaaaat
gagaaaaaatccaggggggtcttgaaaatttgaaaaaaaatccagggtgt
caCTTTTCCCgaaaaagacctcctcaacatagggggtacaaattttttct
ggaatagcccaatgttGGACAGTTGCTTCTTTCTCTGTCATTTCTTTCTC
CATCTCGTTCAattttgtctctttttgtaagattttgattttgtgttcat
tttccaaatttttcattttcattttccattcattttctTGTTCTTTCTTG
TACAGAACCATTTCGTGCTCTTTGGCTACTAATTGTTTCTCCTTTTCAAC
TAAGTTATTTTGCAGCTCGACGTTCTGTTTTTGGAGTTGTTGATCGGCTT
GAACTTGACTTGATTGAGAATCATGAGAATTCTTTAATTTGAACATCTCA
AATTGATGAGATaaagtttgaatttctttttctagctgcatgattttcaa
cgttttttcgTTTTCAGATTCCAGTTGTTGAATCTTAAATTCCATTTTGA
GTTTCTCAATCTCTTTTTGGTGTTCTTCTTTGAGCTTTCCAATTTGCTGA
TTGTCAGCAACTTTGTGCACATTCCTCCCACTAGCACTGTGAGCAAAA Coding sequence (CDS) from alignment at scaffold_344:346774..347521 >TCONS_00060571 ID=TCONS_00060571|Name=TCONS_00060571|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_344:346774..347521 (Clytia hemisphaerica)
ctaaaaaatgagaaaaaatccaggggggtcttgaaaatttgaaaaaaaat
ccagggtgtcaCTTTTCCCgaaaaagacctcctcaacatagggggtacaa
attttttctggaatagcccaatgttGGACAGTTGCTTCTTTCTCTGTCAT
TTCTTTCTCCATCTCGTTCAattttgtctctttttgtaagattttgattt
tgtgttcattttccaaatttttcattttcattttccattcattttctTGT
TCTTTCTTGTACAGAACCATTTCGTGCTCTTTGGCTACTAATTGTTTCTC
CTTTTCAACTAAGTTATTTTGCAGCTCGACGTTCTGTTTTTGGAGTTGTT
GATCGGCTTGAACTTGACTTGATTGAGAATCATGAGAATTCTTTAATTTG
AACATCTCAAATTGATGAGATaaagtttgaatttctttttctagctgcat
gattttcaacgttttttcgTTTTCAGATTCCAGTTGTTGAATCTTAAATT
CCATTTTGAGTTTCTCAATCTCTTTTTGGTGTTCTTCTTTGAGCTTTCCA
ATTTGCTGATTGTCAGCAACTTTGTGCACATTCCTCCCACTAGCACTGTG
AGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060571-exon-scaffold_344-1491911889:346774..347521 | TCONS_00060571-exon-scaffold_344-1491911889:346774..347521 | Clytia hemisphaerica | exon |
| TCONS_00060571-exon-scaffold_344-1510915933:346774..347521 | TCONS_00060571-exon-scaffold_344-1510915933:346774..347521 | Clytia hemisphaerica | exon |
| TCONS_00060571-exon-scaffold_344-1575043694:346774..347521 | TCONS_00060571-exon-scaffold_344-1575043694:346774..347521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_344 | supercontig | scaffold_344:346774..347521 . |
Blast
The following BLAST results are available for this feature:
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