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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060370 ID=TCONS_00060370|Name=TCONS_00060370|organism=Clytia hemisphaerica|type=transcript|length=497bp
AACAACTTTTCATCAGACGAGAGCATTTCTTCAAAGCAAACTCAACCAAC
CCTCCGAGATGTCGTCCCACCATGAAGTAACCAAAGgaaatattctaaaa
aataatcCACGCCTCAAACAAACAAGATTATCAATGGGTCCTGTCGTTTT
GAATAACGCCCTTCCCGCAAGTTTCACAAGGCGTGCAACACGGGCGGAAA
TCATGGTGGCGGGAGCACCCACTGTGTTGGGGCATGATAGTACGACAAAG
AAAGAAAGACTTCCCGAACAATGGGTGCTGGTTGATGAGATCAACGTTGA
AGGACGCAGTGATAACAAACAGAGATTGAATTGGAGAGAATGCACCTCAA
AACAGATGGATTATTTATCAAAACAGCTGAGAACATCACTGGCCAAACAT
CCACATCAAATGCTCAGCAACAAAGCTAAAGAAGaactaaagaaattttt
gtagttcgtttttaaaacttaaaataaacttacttacttagttcaaa Run BLAST on NCBI protein sequence of TCONS_00060370-protein >TCONS_00060370-protein ID=TCONS_00060370-protein|Name=TCONS_00060370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
TTFHQTRAFLQSKLNQPSEMSSHHEVTKGNILKNNPRLKQTRLSMGPVVL
NNALPASFTRRATRAEIMVAGAPTVLGHDSTTKKERLPEQWVLVDEINVE
GRSDNKQRLNWRECTSKQMDYLSKQLRTSLAKHPHQMLSNKAKEELKKFL Run BLAST on NCBI transcript from alignment at scaffold_341:173439..176299+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060370 ID=TCONS_00060370|Name=TCONS_00060370|organism=Clytia hemisphaerica|type=transcript|length=2861bp|location=Sequence derived from alignment at scaffold_341:173439..176299+ (Clytia hemisphaerica)
AACAACTTTTCATCAGACGAGAGCATTTCTTCAAAGCAAACTCAACCAAC
CCTCCGAGATGTCGTCCCACCATGAAGTAACCAAAGgaaatattctaaaa
aataatcCACGCCTCAAACAAACAAGATTATCAATGGGTCCTGTCGTTTT
GAATAACGCCCTTCCCGCAAGTTTCACAAGGCGTGCAACACGGGCGGAAA
TCATGGTGGCGGGAGCACCCACTGTGTTGGGGCATGATAGTACGACAAAG
AAAGAAAGACTTCCCGAACAATGGGTGCTGGTTGATGAGATCAACGTTGA
AGGACGCAGTGATAACAAACAGAGATTGGTACATCATTTTCCATCATTTc
gatattttacattttttctaatccatctttttgccctttttggtgCCCTG
AAACTCGATTTAGATAACCAACTTTCTCTTTTGTGTAGTTTTTTACTAGT
TCATATGCTTGATGCTGGGACCACAAAATTTTCGCTTGAAGAAGATTAAA
AGGTAGCAAGCCATCGAGGCCCTCATTGAGTTTATAGCCCTGAAAGGATt
agagatgaatcttcaacctttctaaagcaaaaaaaagtgaagccttaatt
TTGCCccgcatttagaaattttgtttcaaaaacacACGGGTTAAGTGTTC
TGGATGAGAAATGAGTGGCGTAATTTTGTTTGaaccttgaaaaatatttt
cattttctcaatTTCTAGAATTGGAGAGAATGCACCTCAAAACAGATGGA
TTATTTATCAAAACAGCTGGTAAGAAGCAAAGTTTTCATTTTAACTCTTT
CGAGACTGGTCCAGCTAAAATCATGCCTGTGGGCATGATGACTTCAAAAC
GCGATTGCGTGCGAGTTACGCTTTGTTACACTCGCTGTAAAAGCTCAAAT
GAAAGCTCCTAAATCGGCCAATCAGATGGCTTGATTTCCAAAGCCGTACA
AAGtctagattttttatttcgcaGGCTAGAATATCGTGGGTTTTTCTAAC
CTATAAATCACAGGctaaaatatcaacaaactttgaaaaaaacaaaatgg
cgtttCGTGCAAAGCCAANATTGAGTTGAATATTAACCTTTGGACGCAAA
GAATTCTGGAACGTTCCAGAATCGTTCAGGATCGCTACGAAACATTTTGG
AACGTTCCCGAACGCCCTTAAACGTTCTGGAACGTCTCAAAAACGCTCCA
TTTAATTTGCACTTCAAATCGCTTTTGATGACACAttagttcgagttatg
gaaattttGAGATATGGAGTAAGCTTTAtaattgttaactgaaggggccT
GAAAACTTTCTCGAGTTCAGGAGacttcgagttatagagtttcgagttaa
agagactctactgtattatAAAAGATCAGAATTAATCTAGGTTGGATGTT
TCATTTTAATCGTGGTCTGAATCAAGTGGTCAAACTTACTAAAGGTGACT
TTCCTGCAATGACCtttattgacgtcaaataaaaatttgtacaaaatcgA
AAATCAACAATCGAAAGAAATTATTGTACTAACAACTTTTCATCAGACGA
GAGCATTTCTTCGAAGANTTCTTCTTCTTCTTGCCAAATTAATTTTGAAC
AACTTTTTAGGCTACAAAATATACATAAACCTTACACAATTCCCTGGAAA
Taggaaaataaatcaaaattttcgaaaaattttgctactttggccgccat
tatggatttccaccattttgaaaaaaaaaaaaaaaaattttttttctaag
tttctaaatttttgaagtcttgcGGTTCTTTTGAGGGGTGAATGATATGA
TGAAAACGTCTCAATCCCAAGATATAGCATTTTTAAAAAGGTATATGAAA
AACAGCGAAAATAGGGCAGTCTCAAAAGAGTTAATGTTATTCGAAATTCT
CAACACGTTAGTTCGAATGAAACGAAGTTGCTTGAACTGACTTTGCTTGA
ACTAGCATTTATAGCAGCTTTCACTAACGGGAAAaagttttccttttctt
ttcgtTTATTTTCAAAAACGATGAAATTCCGTTTTATTATTAAATTAACA
TTAAAATTACTGTACGAATTTTTCGGCAAACCTGTTTTGCACATTTAACG
AATTTTATATTATAAGAAATATtgttatccatatagcggtcattaagtaa
gccattaaagattcgaacaGCGGGCGGTATAGGAAGTttctatgactcaa
atagtcatacccgtgctgagaaaactaaggccttgcgcttcagagggctg
aaatatcattaaccgccctggttatagggcgataacgtcatttgcggccc
gctcggaacttcattgaagtcgttgcattgaagcggtgaGATTAAaccga
cgtcagaaaaaaacactttttggttaTTTAcggcccgctcgcaagggtAC
TCCAAACTTGttaaagtcattgcattgaagcgaaaagatttggctgacgc
tagaaaaaaacgtgttGTTTGAATGttcgatatggataataatagtaata
gcgttaagctttcgttcgttgttgtccTTAATTCttcccttgcagtttga
ttattagccctctagtgccatttgcgccctccgcttcgcgtcgggcccaa
atgacactctcgggataataatcaaactgcgcgggcagaaaataacaaca
gcgacctcaaactgaacgctattgttataataAAAGCCCCTTCTCTTGAA
TTATATTTTGTTCTTCATTCTTTTCTTCATTCTTCTTAACCAGAGAACAT
CACTGGCCAAACATCCACATCAAATGCTCAGCAACAAAGCTAAAGAAGaa
ctaaagaaatttttgtagttcgtttttaaaacttaaaataaacttactta
cttagttcaaa Coding sequence (CDS) from alignment at scaffold_341:173439..176299+ >TCONS_00060370 ID=TCONS_00060370|Name=TCONS_00060370|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_341:173439..176299+ (Clytia hemisphaerica)
ACAACTTTTCATCAGACGAGAGCATTTCTTCAAAGCAAACTCAACCAACC
CTCCGAGATGTCGTCCCACCATGAAGTAACCAAAGgaaatattctaaaaa
ataatcCACGCCTCAAACAAACAAGATTATCAATGGGTCCTGTCGTTTTG
AATAACGCCCTTCCCGCAAGTTTCACAAGGCGTGCAACACGGGCGGAAAT
CATGGTGGCGGGAGCACCCACTGTGTTGGGGCATGATAGTACGACAAAGA
AAGAAAGACTTCCCGAACAATGGGTGCTGGTTGATGAGATCAACGTTGAA
GGACGCAGTGATAACAAACAGAGATTGAATTGGAGAGAATGCACCTCAAA
ACAGATGGATTATTTATCAAAACAGCTGAGAACATCACTGGCCAAACATC
CACATCAAATGCTCAGCAACAAAGCTAAAGAAGaactaaagaaatttttg
tagACAACTTTTCATCAGACGAGAGCATTTCTTCAAAGCAAACTCAACCA
ACCCTCCGAGATGTCGTCCCACCATGAAGTAACCAAAGgaaatattctaa
aaaataatcCACGCCTCAAACAAACAAGATTATCAATGGGTCCTGTCGTT
TTGAATAACGCCCTTCCCGCAAGTTTCACAAGGCGTGCAACACGGGCGGA
AATCATGGTGGCGGGAGCACCCACTGTGTTGGGGCATGATAGTACGACAA
AGAAAGAAAGACTTCCCGAACAATGGGTGCTGGTTGATGAGATCAACGTT
GAAGGACGCAGTGATAACAAACAGAGATTGAATTGGAGAGAATGCACCTC
AAAACAGATGGATTATTTATCAAAACAGCTGAGAACATCACTGGCCAAAC
ATCCACATCAAATGCTCAGCAACAAAGCTAAAGAAGaactaaagaaattt
ttgtagACAACTTTTCATCAGACGAGAGCATTTCTTCAAAGCAAACTCAA
CCAACCCTCCGAGATGTCGTCCCACCATGAAGTAACCAAAGgaaatattc
taaaaaataatcCACGCCTCAAACAAACAAGATTATCAATGGGTCCTGTC
GTTTTGAATAACGCCCTTCCCGCAAGTTTCACAAGGCGTGCAACACGGGC
GGAAATCATGGTGGCGGGAGCACCCACTGTGTTGGGGCATGATAGTACGA
CAAAGAAAGAAAGACTTCCCGAACAATGGGTGCTGGTTGATGAGATCAAC
GTTGAAGGACGCAGTGATAACAAACAGAGATTGAATTGGAGAGAATGCAC
CTCAAAACAGATGGATTATTTATCAAAACAGCTGAGAACATCACTGGCCA
AACATCCACATCAAATGCTCAGCAACAAAGCTAAAGAAGaactaaagaaa
tttttgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060370-exon-scaffold_341-1491911889:173439..173766 | TCONS_00060370-exon-scaffold_341-1491911889:173439..173766 | Clytia hemisphaerica | exon |
| TCONS_00060370-exon-scaffold_341-1510915933:173439..173766 | TCONS_00060370-exon-scaffold_341-1510915933:173439..173766 | Clytia hemisphaerica | exon |
| TCONS_00060370-exon-scaffold_341-1575043694:173439..173766 | TCONS_00060370-exon-scaffold_341-1575043694:173439..173766 | Clytia hemisphaerica | exon |
| TCONS_00060370-exon-scaffold_341-1491911889:174157..174207 | TCONS_00060370-exon-scaffold_341-1491911889:174157..174207 | Clytia hemisphaerica | exon |
| TCONS_00060370-exon-scaffold_341-1510915933:174157..174207 | TCONS_00060370-exon-scaffold_341-1510915933:174157..174207 | Clytia hemisphaerica | exon |
| TCONS_00060370-exon-scaffold_341-1575043694:174157..174207 | TCONS_00060370-exon-scaffold_341-1575043694:174157..174207 | Clytia hemisphaerica | exon |
| TCONS_00060370-exon-scaffold_341-1491911889:176182..176299 | TCONS_00060370-exon-scaffold_341-1491911889:176182..176299 | Clytia hemisphaerica | exon |
| TCONS_00060370-exon-scaffold_341-1510915933:176182..176299 | TCONS_00060370-exon-scaffold_341-1510915933:176182..176299 | Clytia hemisphaerica | exon |
| TCONS_00060370-exon-scaffold_341-1575043694:176182..176299 | TCONS_00060370-exon-scaffold_341-1575043694:176182..176299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:173439..176299 + |
Blast
The following BLAST results are available for this feature:
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