TCONS_00060361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060361
Unique NameTCONS_00060361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060361 ID=TCONS_00060361|Name=TCONS_00060361|organism=Clytia hemisphaerica|type=transcript|length=1570bp
AATTGACCATGTTGTTTGTTTGCTTTATGTTTGATTGATTTTCCGTTGAT
TAATGCACTTTTACATGAACCTAATTAAGAAATAAAACACCAAGTCAAAT
GGATCTACCGTCTTCTGGCAATGATCAATATGACTATTTATACAAGATAG
TTTTGACTGGGGATTCTGGCGTGGGAAAATCCTGTCTTTTATCAAGATTC
ACACGTAATGAGTTTGATGTGGAATCCAGATCTACTATTGGTGTAGAATT
TGCTACCAGAAGCATCAAAGTTGCCGGGAAAACTATAAAAGCACAGGTCT
GGGATACAGCAGGCCAAGAAAGGTATCGAGCCATCACTTCTGCTTATTAT
CGTGGTGCAGTGGGGGCACTAATCACCTATGACATTTCAAAACTAAGAAC
ATTCAACAATATTGAACGTTGGTTGAACGAGTTAAAAGAGCACTCTGACC
CTGATATTGTTATAATGTTGGTTGGAAATAAAACGGATTTGAAGCACCTT
CGTGCTGTTAATACTGAAGATGCTAAAGAGTTTGCagaacaaaataaaat
gatgTTTATTGAAACGTCTGCTTTGGATGCTACAAATGTTGAGTCAGCAT
TTATTTCAACTATACAAAAAGTTCATGAAATTCAGCTGAGTAAAATCAAA
GATCAAGTACCCCATGTCAAAACTGAGACCGTTGAACTGTCGGCTAATGG
TGAAAAGAAGAACTGTGCTTGTTGATCTTGTTTTAATTTTATGGATCTTG
AAAGTCTTTAAGAAATATTTATGAGAATCACTTTACTACTATTCATCCAG
TTAAAGCGCCTCTTGAAAGATATCTTTGCGACTTTGGAAATCTTAGGAAA
TAAATACTACTATAAAGACTACAGttacttcttttcaaaaaattacatAA
AGATCCTTCAAGAATTATTCTCTCTTTCTAGTTCTTGCATAGTTTCTGCA
ATCTTCAGTTTCCCTTCATAACCttagcaaaatatttcatgTAAAATAGA
ACTTTTTGTAATATTATCGACATTTTATTagttatttttccattttcttt
acATTTAACACGAtgtattttttgatacttttggtAGAAGTTTTCACAGC
AATTTCAATATTGTGTATAAaagttttagtttaatattATAATTATAGGG
TTAGTATCATCATAAATTGGTATTACAACATAGTTAACTGTATTTTAAGG
AGTGAACAACCGAATGGGGGTGCATTACAATTAGCCTTTTCCtgtcaaaa
gttattttttttctaaaaatcttaTTGAATAGATCGTCGAgttaaaaatt
atcttttttgacAGCTATATCTTTTAGAACTTGAATTTTTATAGTTATAA
AATTTTATAGAGATAATCTTCTGAATAATTGCAAAACAATCTTTCCTTCG
TTATTTCTAATATTATACAGTGATTGATTACATAGTTACTTTTTGTTCTG
CATATATTATTCTCCTTAGAAaaactcttctttttttttgaattgttaaA
AATTGTATGTTGTAAATTAATCAGAATCTAGTTATAGCTCATTTTTACTA
GAAATAAAATTGTACTGACA
Run BLAST on NCBI

protein sequence of TCONS_00060361-protein

>TCONS_00060361-protein ID=TCONS_00060361-protein|Name=TCONS_00060361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MDLPSSGNDQYDYLYKIVLTGDSGVGKSCLLSRFTRNEFDVESRSTIGVE
FATRSIKVAGKTIKAQVWDTAGQERYRAITSAYYRGAVGALITYDISKLR
TFNNIERWLNELKEHSDPDIVIMLVGNKTDLKHLRAVNTEDAKEFAEQNK
MMFIETSALDATNVESAFISTIQKVHEIQLSKIKDQVPHVKTETVELSAN
GEKKNCAC
Run BLAST on NCBI

transcript from alignment at scaffold_341:157353..159737+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060361 ID=TCONS_00060361|Name=TCONS_00060361|organism=Clytia hemisphaerica|type=transcript|length=2385bp|location=Sequence derived from alignment at scaffold_341:157353..159737+ (Clytia hemisphaerica)
AATTGACCATGTTGTTTGTTTGCTTTATGTTTGATTGATTTTCCGTTGAT
TAAGTAACTGTCTATCATTTTTGTTATTAAGAGCTGATTTGCATGATTGA
AAAGTTTATGTGTTattaaaaattggattatttCAGTTTCTTAAAAGGAA
CCTTTCCCTCCTCATTCGATTGAAATTGATATACTGAGACATTAGATTAC
ACATAGTTCAAACTGTTATGAAATGCTTGATACAGATTATATGTTTTCGT
AAGAATTAACTGTGAAAAAACGTTATTGCATTCACTTTAAACTATTTCGC
CTGTCTAGTAATTTCTCTCtatttagttttaaaaatagtttatgatcata
aactttttaaagtatagcaAGAAGCGATGATGCACTTATAAACGTGTGTT
AAACGTAGATAAAGCAGATTTATTCAttcagtttttattttgataaaaaa
caatTTCTATTTGAATTGATAACTGGTGTCTCTTAAGAAACACAAGTTGT
TACTTGAACGTATtgcaaagaaaacatttttgtggCAATTATGAGAATGA
CTTGATAGAATATTTTTGTGATAGGTCTTGCTTTGAATATCTTGCTCTGA
ACACAAAGATCTTTCTCTTATTAcgtctttcattttattttgtaaagTGC
ACTTTTACATGAACCTAATTAAGAAATAAAACACCAAGTCAAATGGATCT
ACCGTCTTCTGGCAATGATCAATATGACTATTTATACAAGATAGTTTTGA
CTGGGGATTCTGGCGTGGGAAAATCCTGTCTTTTATCAAGATTCACACGT
AATGAGTTTGATGTGGAATCCAGATCTACTATTGGTGTAGAATTTGCTAC
CAGAAGCATCAAAGTTGCCGGGAAAACTATAAAAGCACAGGTATTGTAGG
TTCATTAGAACCATTATCATTGTAAAAAAAAGCTCCAATTACCTCATATT
TTTAGGTATTTTACGAAAGAAAATGATATTCAAAATCAACTTGCATTTAC
TTCTAACTGTCTTAGTGAATGTTAAATTTCACACGGGATTCCTTTACGCC
AGCTACGCCTGGCATTTCATGTAATACAACAACCTTTCATCTTTCTGTTT
TCTTTCTCCAGGTCTGGGATACAGCAGGCCAAGAAAGGTATCGAGCCATC
ACTTCTGCTTATTATCGTGGTGCAGTGGGGGCACTAATCACCTATGACAT
TTCAAAACTAAGAACATTCAACAATATTGAACGTTGGTTGAACGAGTTAA
AAGAGCACTCTGACCCTGATATTGTTATAATGTTGGTTGGAAATAAAACG
GATTTGAAGCACCTTCGTGCTGTTAATACTGAAGATGCTAAAGAGTTTGC
agaacaaaataaaatgatgTTTATTGAAACGTCTGCTTTGGATGCTACAA
ATGTTGAGTCAGCATTTATTTCAACTATACAAAAAGTTCATGAAATTCAG
CTGAGTAAAATCAAAGATCAAGTACCCCATGTCAAAACTGAGACCGTTGA
ACTGTCGGCTAATGGTGAAAAGAAGAACTGTGCTTGTTGATCTTGTTTTA
ATTTTATGGATCTTGAAAGTCTTTAAGAAATATTTATGAGAATCACTTTA
CTACTATTCATCCAGTTAAAGCGCCTCTTGAAAGATATCTTTGCGACTTT
GGAAATCTTAGGAAATAAATACTACTATAAAGACTACAGttacttctttt
caaaaaattacatAAAGATCCTTCAAGAATTATTCTCTCTTTCTAGTTCT
TGCATAGTTTCTGCAATCTTCAGTTTCCCTTCATAACCttagcaaaatat
ttcatgTAAAATAGAACTTTTTGTAATATTATCGACATTTTATTagttat
ttttccattttctttacATTTAACACGAtgtattttttgatacttttggt
AGAAGTTTTCACAGCAATTTCAATATTGTGTATAAaagttttagtttaat
attATAATTATAGGGTTAGTATCATCATAAATTGGTATTACAACATAGTT
AACTGTATTTTAAGGAGTGAACAACCGAATGGGGGTGCATTACAATTAGC
CTTTTCCtgtcaaaagttattttttttctaaaaatcttaTTGAATAGATC
GTCGAgttaaaaattatcttttttgacAGCTATATCTTTTAGAACTTGAA
TTTTTATAGTTATAAAATTTTATAGAGATAATCTTCTGAATAATTGCAAA
ACAATCTTTCCTTCGTTATTTCTAATATTATACAGTGATTGATTACATAG
TTACTTTTTGTTCTGCATATATTATTCTCCTTAGAAaaactcttcttttt
ttttgaattgttaaAAATTGTATGTTGTAAATTAATCAGAATCTAGTTAT
AGCTCATTTTTACTAGAAATAAAATTGTACTGACA

Coding sequence (CDS) from alignment at scaffold_341:157353..159737+

>TCONS_00060361 ID=TCONS_00060361|Name=TCONS_00060361|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_341:157353..159737+ (Clytia hemisphaerica)
ATGGATCTACCGTCTTCTGGCAATGATCAATATGACTATTTATACAAGAT
AGTTTTGACTGGGGATTCTGGCGTGGGAAAATCCTGTCTTTTATCAAGAT
TCACACGTAATGAGTTTGATGTGGAATCCAGATCTACTATTGGTGTAGAA
TTTGCTACCAGAAGCATCAAAGTTGCCGGGAAAACTATAAAAGCACAGGT
CTGGGATACAGCAGGCCAAGAAAGGTATCGAGCCATCACTTCTGCTTATT
ATCGTGGTGCAGTGGGGGCACTAATCACCTATGACATTTCAAAACTAAGA
ACATTCAACAATATTGAACGTTGGTTGAACGAGTTAAAAGAGCACTCTGA
CCCTGATATTGTTATAATGTTGGTTGGAAATAAAACGGATTTGAAGCACC
TTCGTGCTGTTAATACTGAAGATGCTAAAGAGTTTGCagaacaaaataaa
atgatgTTTATTGAAACGTCTGCTTTGGATGCTACAAATGTTGAGTCAGC
ATTTATTTCAACTATACAAAAAGTTCATGAAATTCAGCTGAGTAAAATCA
AAGATCAAGTACCCCATGTCAAAACTGAGACCGTTGAACTGTCGGCTAAT
GGTGAAAAGAAGAACTGTGCTTGTTGAATGGATCTACCGTCTTCTGGCAA
TGATCAATATGACTATTTATACAAGATAGTTTTGACTGGGGATTCTGGCG
TGGGAAAATCCTGTCTTTTATCAAGATTCACACGTAATGAGTTTGATGTG
GAATCCAGATCTACTATTGGTGTAGAATTTGCTACCAGAAGCATCAAAGT
TGCCGGGAAAACTATAAAAGCACAGGTCTGGGATACAGCAGGCCAAGAAA
GGTATCGAGCCATCACTTCTGCTTATTATCGTGGTGCAGTGGGGGCACTA
ATCACCTATGACATTTCAAAACTAAGAACATTCAACAATATTGAACGTTG
GTTGAACGAGTTAAAAGAGCACTCTGACCCTGATATTGTTATAATGTTGG
TTGGAAATAAAACGGATTTGAAGCACCTTCGTGCTGTTAATACTGAAGAT
GCTAAAGAGTTTGCagaacaaaataaaatgatgTTTATTGAAACGTCTGC
TTTGGATGCTACAAATGTTGAGTCAGCATTTATTTCAACTATACAAAAAG
TTCATGAAATTCAGCTGAGTAAAATCAAAGATCAAGTACCCCATGTCAAA
ACTGAGACCGTTGAACTGTCGGCTAATGGTGAAAAGAAGAACTGTGCTTG
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037984XLOC_037984Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060361-proteinTCONS_00060361-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060361-exon-scaffold_341-1491911889:157353..157405TCONS_00060361-exon-scaffold_341-1491911889:157353..157405Clytia hemisphaericaexon
TCONS_00060361-exon-scaffold_341-1510915933:157353..157405TCONS_00060361-exon-scaffold_341-1510915933:157353..157405Clytia hemisphaericaexon
TCONS_00060361-exon-scaffold_341-1575043694:157353..157405TCONS_00060361-exon-scaffold_341-1575043694:157353..157405Clytia hemisphaericaexon
TCONS_00060361-exon-scaffold_341-1491911889:158000..158242TCONS_00060361-exon-scaffold_341-1491911889:158000..158242Clytia hemisphaericaexon
TCONS_00060361-exon-scaffold_341-1510915933:158000..158242TCONS_00060361-exon-scaffold_341-1510915933:158000..158242Clytia hemisphaericaexon
TCONS_00060361-exon-scaffold_341-1575043694:158000..158242TCONS_00060361-exon-scaffold_341-1575043694:158000..158242Clytia hemisphaericaexon
TCONS_00060361-exon-scaffold_341-1491911889:158464..159737TCONS_00060361-exon-scaffold_341-1491911889:158464..159737Clytia hemisphaericaexon
TCONS_00060361-exon-scaffold_341-1510915933:158464..159737TCONS_00060361-exon-scaffold_341-1510915933:158464..159737Clytia hemisphaericaexon
TCONS_00060361-exon-scaffold_341-1575043694:158464..159737TCONS_00060361-exon-scaffold_341-1575043694:158464..159737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:157353..159737 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.4482	22.8304	12.5527	12.4526	16.1423	12.7721	24.2675	23.9223	20.3744	20.9277	13.5003	10.3089	15.388	11.4255	15.5707	16.3457	33.9272	33.5724	8.08853	11.8111	31.7218	29.2446	38.0903	33.0053	21.0092	23.1389	20.0026	15.33	22.2366	21.0209
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00060361 vs. Swiss-Prot (Human)
Match: RB11B (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 270.396 bits (690), Expect = 9.450e-87
Identity = 131/206 (63.59%), Postives = 168/206 (81.55%), Query Frame = 3 
Query:  120 NDQYDYLYKIVLTGDSGVGKSCLLSRFTRNEFDVESRSTIGVEFATRSIKVAGKTIKAQVWDTAGQERYRAITSAYYRGAVGALITYDISKLRTFNNIERWLNELKEHSDPDIVIMLVGNKTDLKHLRAVNTEDAKEFAEQNKMMFIETSALDATNVESAFISTIQKVHEIQLSK-IKDQVPHVKTE-------TVELSANGEKKN 713
            +D+YDYL+K+VL GDSGVGKS LLSRFTRNEF++ES+STIGVEFATRSI+V GKTIKAQ+WDTAGQERYRAITSAYYRGAVGAL+ YDI+K  T+ N+ERWL EL++H+D +IVIMLVGNK+DL+HLRAV T++A+ FAE+N + FIETSALD+TNVE AF + + +++ I   K I D+  H ++        +V  + +G+K N
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPN 210
The following BLAST results are available for this feature:
BLAST of TCONS_00060361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11B9.450e-8763.59Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
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