TCONS_00060361-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060361-protein
Unique NameTCONS_00060361-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length208

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060361-protein ID=TCONS_00060361-protein|Name=TCONS_00060361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MDLPSSGNDQYDYLYKIVLTGDSGVGKSCLLSRFTRNEFDVESRSTIGVE
FATRSIKVAGKTIKAQVWDTAGQERYRAITSAYYRGAVGALITYDISKLR
TFNNIERWLNELKEHSDPDIVIMLVGNKTDLKHLRAVNTEDAKEFAEQNK
MMFIETSALDATNVESAFISTIQKVHEIQLSKIKDQVPHVKTETVELSAN
GEKKNCAC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037984XLOC_037984Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060361TCONS_00060361Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 56..78
score: 50.8
coord: 15..36
score: 53.48
coord: 118..131
score: 53.64
coord: 38..54
score: 35.11
coord: 153..175
score: 38.97
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 12..178
e-value: 2.8E-23
score: 93.4
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 15..178
e-value: 9.9E-102
score: 354.0
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 17..178
e-value: 5.0E-12
score: 34.2
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 20..208
e-value: 7.3E-5
score: 20.2
NoneNo IPR availableGENE3D3.30.70.1390coord: 14..78
e-value: 5.2E-29
score: 99.6
NoneNo IPR availableGENE3D3.40.50.300coord: 79..176
e-value: 3.1E-36
score: 123.0
NoneNo IPR availablePROSITEPS51419RABcoord: 10..208
score: 34.959
NoneNo IPR availableCDDcd01868Rab11_likecoord: 12..176
e-value: 4.19495E-117
score: 332.217
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 13..168
e-value: 1.4E-41
score: 140.0
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 16..176
e-value: 3.9E-60
score: 202.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 10..191

Blast
[Close]
BLAST of TCONS_00060361-protein vs. Swiss-Prot (Human)
Match: RB11B (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 270.011 bits (689), Expect = 1.013e-92
Identity = 131/206 (63.59%), Postives = 168/206 (81.55%), Query Frame = 0 
Query:    8 NDQYDYLYKIVLTGDSGVGKSCLLSRFTRNEFDVESRSTIGVEFATRSIKVAGKTIKAQVWDTAGQERYRAITSAYYRGAVGALITYDISKLRTFNNIERWLNELKEHSDPDIVIMLVGNKTDLKHLRAVNTEDAKEFAEQNKMMFIETSALDATNVESAFISTIQKVHEIQLSK-IKDQVPHVKTE-------TVELSANGEKKN 205
            +D+YDYL+K+VL GDSGVGKS LLSRFTRNEF++ES+STIGVEFATRSI+V GKTIKAQ+WDTAGQERYRAITSAYYRGAVGAL+ YDI+K  T+ N+ERWL EL++H+D +IVIMLVGNK+DL+HLRAV T++A+ FAE+N + FIETSALD+TNVE AF + + +++ I   K I D+  H ++        +V  + +G+K N
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPN 210
The following BLAST results are available for this feature:
BLAST of TCONS_00060361-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11B1.013e-9263.59Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
back to top