TCONS_00060292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060292
Unique NameTCONS_00060292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060292 ID=TCONS_00060292|Name=TCONS_00060292|organism=Clytia hemisphaerica|type=transcript|length=1390bp
TTCAAACACTAGGGGTCACAATGAAGTGAGGAAAATCTTTAATTCTGCAA
ATGGGTTAATAATGTTCTTTATATTTGTTTtaagtaaaattaaacaaccT
TTAACAAACGGATATGAAGAAAGGGAATAATTTGCGTCTGAAATTTGGAA
ATGATGAAGTGTCACTTAAACTCGGAAGGATTTTGGGGCGTGGTACTTTC
GGTACAGTAAATTTAGCAATTGATAAAAAAGACCGAAAACAATATGCTGT
CAAGATGAGCCAGTGTATCGATGGTGCAACATATTTTGCAGCTGCTCGTG
AAATTGAGGCTTTGATAACCTTATGTCATGCCAACATTGCAAAGATGAAA
GCATTCGATTTTCTAAACAATAATGCAGTAATTGTGATGGAGTATTGCGA
GGGTGGTGATTTGAACCAAAGATTATGTCAAGAGGATATTGCTGAGCGTG
TTAAACTTGCCTGGATTGTACAACTTTGTGATGCAATGATATATTTACAT
GAAAAAGGTATGGTGCATCGTGATTTGAAGCCACAAAATGTGTTGCTGAG
CaatgatcaaatcaaactgACAGATTTTGGAATCTCAAGATATTACAAAA
CTGATGGTTTATCTGGAAATAATCTGTCAGAATTTCTTGGAACCTTTGCG
GGAACACCATACTGGGTAGCTCCGGAAGTTTTCGATCAACGGTATACAGA
AACAGCggacattttttctgttggagtGCTTTGTTATGCAATACTCCATC
AAGAAAGCATAATTTATGAGaatgaaagatattttggtATCTTTGTTATT
CATAATGGTCGTGAAGTTGGTCTCGGCTTAGCTATGGTTGAACAAAATCG
TGAGATACTTCCCTCCAAAACACACATTGTTGAATCAATAGATAACATTA
TAGTACAATTGGTAAGACGTGACCCACAGGACCGCGTTTCCTTGAAAGAT
GCAAGGGAGGAGATAGCAGAACAGTTGAGGGAATATCATCTTGTTAATGT
AGAAGAGGGTGTTGTTCACCGACATGGAATCAGAGCTCATGCATGGACCC
TCTTTGACAATTGGCTACCTGCATTTATACCACGTAATAATTTTTGTACC
ATTCTTTAATTATTTTATTGCGTTGAAATCATCATACTCTTTAAGGTCAA
ACTTTTTATTCTGGCATTTTTGTATACTTGTTGCAAACCATTAAACCAGA
AACTTCtttattttgcatattttttaaGGTTACCACAATTAGTAATGTGA
TTATTTTTTACAGGAAGATAAAAGTTTGCTACATAAGATAAATTAAGCTT
AGTCTAGGTACTGCTATAATATAATAGATATATTGTTTATGAACAGAAAT
GCACTTGGttcttataaacgttatgcttacaattattttt
Run BLAST on NCBI

protein sequence of TCONS_00060292-protein

>TCONS_00060292-protein ID=TCONS_00060292-protein|Name=TCONS_00060292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MKKGNNLRLKFGNDEVSLKLGRILGRGTFGTVNLAIDKKDRKQYAVKMSQ
CIDGATYFAAAREIEALITLCHANIAKMKAFDFLNNNAVIVMEYCEGGDL
NQRLCQEDIAERVKLAWIVQLCDAMIYLHEKGMVHRDLKPQNVLLSNDQI
KLTDFGISRYYKTDGLSGNNLSEFLGTFAGTPYWVAPEVFDQRYTETADI
FSVGVLCYAILHQESIIYENERYFGIFVIHNGREVGLGLAMVEQNREILP
SKTHIVESIDNIIVQLVRRDPQDRVSLKDAREEIAEQLREYHLVNVEEGV
VHRHGIRAHAWTLFDNWLPAFIPRNNFCTIL
Run BLAST on NCBI

transcript from alignment at scaffold_339:239918..241307

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060292 ID=TCONS_00060292|Name=TCONS_00060292|organism=Clytia hemisphaerica|type=transcript|length=1390bp|location=Sequence derived from alignment at scaffold_339:239918..241307 (Clytia hemisphaerica)
aaaaataattgtaagcataacgtttataagaaCCAAGTGCATTTCTGTTC
ATAAACAATATATCTATTATATTATAGCAGTACCTAGACTAAGCTTAATT
TATCTTATGTAGCAAACTTTTATCTTCCTGTAAAAAATAATCACATTACT
AATTGTGGTAACCttaaaaaatatgcaaaataaaGAAGTTTCTGGTTTAA
TGGTTTGCAACAAGTATACAAAAATGCCAGAATAAAAAGTTTGACCTTAA
AGAGTATGATGATTTCAACGCAATAAAATAATTAAAGAATGGTACAAAAA
TTATTACGTGGTATAAATGCAGGTAGCCAATTGTCAAAGAGGGTCCATGC
ATGAGCTCTGATTCCATGTCGGTGAACAACACCCTCTTCTACATTAACAA
GATGATATTCCCTCAACTGTTCTGCTATCTCCTCCCTTGCATCTTTCAAG
GAAACGCGGTCCTGTGGGTCACGTCTTACCAATTGTACTATAATGTTATC
TATTGATTCAACAATGTGTGTTTTGGAGGGAAGTATCTCACGATTTTGTT
CAACCATAGCTAAGCCGAGACCAACTTCACGACCATTATGAATAACAAAG
ATaccaaaatatctttcattCTCATAAATTATGCTTTCTTGATGGAGTAT
TGCATAACAAAGCactccaacagaaaaaatgtccGCTGTTTCTGTATACC
GTTGATCGAAAACTTCCGGAGCTACCCAGTATGGTGTTCCCGCAAAGGTT
CCAAGAAATTCTGACAGATTATTTCCAGATAAACCATCAGTTTTGTAATA
TCTTGAGATTCCAAAATCTGTcagtttgatttgatcattGCTCAGCAACA
CATTTTGTGGCTTCAAATCACGATGCACCATACCTTTTTCATGTAAATAT
ATCATTGCATCACAAAGTTGTACAATCCAGGCAAGTTTAACACGCTCAGC
AATATCCTCTTGACATAATCTTTGGTTCAAATCACCACCCTCGCAATACT
CCATCACAATTACTGCATTATTGTTTAGAAAATCGAATGCTTTCATCTTT
GCAATGTTGGCATGACATAAGGTTATCAAAGCCTCAATTTCACGAGCAGC
TGCAAAATATGTTGCACCATCGATACACTGGCTCATCTTGACAGCATATT
GTTTTCGGTCTTTTTTATCAATTGCTAAATTTACTGTACCGAAAGTACCA
CGCCCCAAAATCCTTCCGAGTTTAAGTGACACTTCATCATTTCCAAATTT
CAGACGCAAATTATTCCCTTTCTTCATATCCGTTTGTTAAAggttgttta
attttacttaAAACAAATATAAAGAACATTATTAACCCATTTGCAGAATT
AAAGATTTTCCTCACTTCATTGTGACCCCTAGTGTTTGAA

Coding sequence (CDS) from alignment at scaffold_339:239918..241307

>TCONS_00060292 ID=TCONS_00060292|Name=TCONS_00060292|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_339:239918..241307 (Clytia hemisphaerica)
TTAAAGAATGGTACAAAAATTATTACGTGGTATAAATGCAGGTAGCCAAT
TGTCAAAGAGGGTCCATGCATGAGCTCTGATTCCATGTCGGTGAACAACA
CCCTCTTCTACATTAACAAGATGATATTCCCTCAACTGTTCTGCTATCTC
CTCCCTTGCATCTTTCAAGGAAACGCGGTCCTGTGGGTCACGTCTTACCA
ATTGTACTATAATGTTATCTATTGATTCAACAATGTGTGTTTTGGAGGGA
AGTATCTCACGATTTTGTTCAACCATAGCTAAGCCGAGACCAACTTCACG
ACCATTATGAATAACAAAGATaccaaaatatctttcattCTCATAAATTA
TGCTTTCTTGATGGAGTATTGCATAACAAAGCactccaacagaaaaaatg
tccGCTGTTTCTGTATACCGTTGATCGAAAACTTCCGGAGCTACCCAGTA
TGGTGTTCCCGCAAAGGTTCCAAGAAATTCTGACAGATTATTTCCAGATA
AACCATCAGTTTTGTAATATCTTGAGATTCCAAAATCTGTcagtttgatt
tgatcattGCTCAGCAACACATTTTGTGGCTTCAAATCACGATGCACCAT
ACCTTTTTCATGTAAATATATCATTGCATCACAAAGTTGTACAATCCAGG
CAAGTTTAACACGCTCAGCAATATCCTCTTGACATAATCTTTGGTTCAAA
TCACCACCCTCGCAATACTCCATCACAATTACTGCATTATTGTTTAGAAA
ATCGAATGCTTTCATCTTTGCAATGTTGGCATGACATAAGGTTATCAAAG
CCTCAATTTCACGAGCAGCTGCAAAATATGTTGCACCATCGATACACTGG
CTCATCTTGACAGCATATTGTTTTCGGTCTTTTTTATCAATTGCTAAATT
TACTGTACCGAAAGTACCACGCCCCAAAATCCTTCCGAGTTTAAGTGACA
CTTCATCATTTCCAAATTTCAGACGCAAATTATTCCCTTTCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037928XLOC_037928Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060292-proteinTCONS_00060292-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060292-exon-scaffold_339-1491911889:239918..241307TCONS_00060292-exon-scaffold_339-1491911889:239918..241307Clytia hemisphaericaexon
TCONS_00060292-exon-scaffold_339-1510915933:239918..241307TCONS_00060292-exon-scaffold_339-1510915933:239918..241307Clytia hemisphaericaexon
TCONS_00060292-exon-scaffold_339-1575043694:239918..241307TCONS_00060292-exon-scaffold_339-1575043694:239918..241307Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:239918..241307 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.974	2.66577	0.850333	0.998301	5.22594	3.90552	4.94358	6.03825	5.21478	7.90173	6.8783	2.961	8.47107	6.41123	10.3542	11.4777	7.91548	7.83574	9.19689	9.42338	5.75087	5.05763	9.16204	11.0227	8.06327	8.00226	5.35488	4.04437	7.90218	8.28887
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00060292 vs. Swiss-Prot (Human)
Match: PDK1L (Serine/threonine-protein kinase PDIK1L OS=Homo sapiens GN=PDIK1L PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.360e-28
Identity = 88/313 (28.12%), Postives = 149/313 (47.60%), Query Frame = 3 
Query:  171 LGRILGRGTFGTVNLAIDKKDRKQYAVKMSQCIDGATYFAAAREIEAL--ITLCHANIAKMK----------------------------------AFDFLNNNAV-IVMEYCEGGDLNQRLCQEDIAERVKLAWIVQLCDAMIYLHEKGMVHRDLKPQNVLLSNDQ---------IKLTDFGISRYYKTDGLSGNNLSE-------FLGTFAGTPYWVAPEVFDQRYTETADIFSVGVLCYAILHQESII--YENERYFGIFVIHNGREVGLGLAMVEQNRE--ILPSKTHIVES-IDNIIVQLVRRDPQDR 935
            L R +GRG++G V  A+ +K   + AVK  +C        A RE  AL  I   H N+  ++                                  AFD  +   +  VM++C+GGD+N+ L       +   ++++QL  A+ +LH+  ++HRDLKP N+L+S  +         +K+ DFG+S   K    SG N  E       FL T  GT +++APEV++  YT  ADIF++G++ +A+L + + I     +   G +V      V +G A++E  +   ++P K   +   +  +I +++  +PQDR
Sbjct:   10 LIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQTRLDTSDLEPTLKVADFGLS---KVCSASGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSMNGRMKQLIKEMLAANPQDR 319
The following BLAST results are available for this feature:
BLAST of TCONS_00060292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDK1L1.360e-2828.12Serine/threonine-protein kinase PDIK1L OS=Homo sap... [more]
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