TCONS_00060097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060097
Unique NameTCONS_00060097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2866

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060097 ID=TCONS_00060097|Name=TCONS_00060097|organism=Clytia hemisphaerica|type=transcript|length=2866bp
CTAAATTATTATCAACATAACTTCGAGTTCACATTCAGATTGTTGCATTT
ATTTCCTTCTTTATTTTCTGTTCGCTTCCACTTTCCATTTTAGAAAGGtt
ataaaatgaaagaataagTAAAAATGTCTTGAAAGAAATTACCATCACCA
TAACGACATGTTCAATAACAAGATCCGTCTGCTCATACCTAACCATCGCA
CCATCATCGAAAACAACAAAAGCTTCACgGTTTACTGCGTGGAAGTTGTT
TGCGACGGCAAAGTAACCAATGTTGAACATCGATACAGCGAGTTCTATGA
ACTGTACAGAAagCTTTCAAAGATGATCGCAGGAAAGATTGTCTTTCCAC
CCAAACGATTATTGAATAATAAAGATGTCAAGTTGATTGAAGCCAGAAGG
AAAGGTCTCCAACAATACTTACAGACGGTTTTGTACACGTTTCAAGACAA
CGTACCACCTCGTTTGTTGGATTTTCTCGGTATCCCTGATTATTATGATC
AACAATACGATAATAATTTCACGACTGACGAGTTGAATTCATCCTTGGAT
GGTGACCAGAAtggaCATGACAATACATTTTCTGCAACCCAAAATATGAT
TTGCTTTCGTAAGGATGCGTTCCTTGTTCCAACGCTAAAAGATTTGGAAG
AAGAAAACACTCTTCCAGACATTATCAATAAAGGTTGTTTAGAGGGCATC
TATGGATAATTTGCTGTGCAACCATTCCAAGATAAAATTGTAAATAGATT
TTTTGATATAGTGAAATTTGATATTTGAATGATTACTTAGTAATAGATTA
TTATAATTACCTGTTTCCATTTTCCGATTTAAATGATTGCTGATCTATGT
GTTGCATTGAAATGTTAAAACCTTTCTAGTTAACCACCTTCATACTAATA
ATTTAgcggtttttttcttttagtgtaAAAAAGTAAAGggacaaaaaaga
aaagttacGGTATAATCGAATAAGAGATGGCGGCACACATGGAGCGATTC
AAGTTGTTGGTGGTCGGTGATTGCGGTGTGGGCAAATCTTCTTTTGTTTG
TGGCGTGGTTCATCAAACACCCTTGCAAAACGCCCCTTCTACCATTGGAT
GCAACGTAGAAGTGTTACCTTACAGTTACGATGACAATGGACGACAACGG
GATGTATTTTTGGAGTTTTGGGATGTTGGCGGATCATCTGGTCATCGTAA
CAGTCGTAGCATCTTTTATAATAACATCGATGGTTTGATTGTTGTGCATG
ATTTATCAaacagaaaatcctttttaaatttacaaaaatgggTTGGGGAA
ACATTCAACTCAAACCGTCAGGAATTCACGGGCATCACGGTTTCAGGGAG
CGATGGTTCACAATATAATGATGACGAGTGTGATGCAATTTCCCATGGAG
GTGGTAGAAAGTCAACTACCAATATCCCAGTGTTAGTGTTGGGCACAAAG
GAAGACCAATGCAACAATGCAGGAGAGCAGAAACGAAATGCGCACCATAT
TGGATTGTCTAATGATAGTGACGTCATCTTCTGTTCCATGAACTGTCTAC
AAGAGGGGCAACTCCAAAAGAACAGTAATAAATGGCAGTCTTTGCATGCC
TTCTTTCATAAAGTAATTGATGTTCGGTTGAATGGTGCAACACGTCGAAA
TACGAACCTCGAAAGTAATTCCGAGTTTAGAGGCCGAAAGAAGATTTACT
GATTTGCTTCAAAGAGCGATTTGAGAAGATTCAGACTTATTACTTGATAA
TAATTTATTATACTTTTTAGATTTCAACAGAATTATTTAAATGATATAAA
TGCCTTGTTATAATTCACCATTAATTTGTTTCGATTTTTCTGACCCTTGA
AGCTCTACAGATTGAAACTCAAATCGTATTTCTTGTTTAGGTGAGAAAAA
TAGTAATACAAAATAATGAGCACGCTGGAGGATAAACCTGAAGATGAGAA
AACCAAAGAACTGTCAGTTGCACAGAAGGTCCGTATGGAGCGCAACCGCC
AGCGTGCCTTGTTGCTCCGTTCTTCAAGGTTAACAAGTCACCCATATGCC
AGTGAGGAGGCGAAGACAGTGCACGTAGGAGGGTCAAGTGTCGTGGATAG
TGGTGGAGGTTTCTTCAtcgatgaagatgaaaatgaagaagaagaaatgg
tCAACGCGGCTGACTTGCCCAAACAACCTGGTCCTATCATAGATGGTAGT
GAAGATCTGTGTGAAGATTGTCACAAGAAATTTTCCGACTCCTATTTGTT
GAAACATTTTGATGTTCAAGTTTGTGATGCGTGTAGAAGTTTGCAGAAAG
ACGAAGCGTACAAAATGATTACAAAGACTGATGCAAGACAGaaattttgt
ctGAAAGATTGCGATTTCGACATTCGAGAGCCTCCATTGAAGTTCATcgt
tcgcaaaaatcctcataATGATCGCTGGGGTGACATGAAGTTGTACCTGG
AACTGCAGGTTCACAAACGCGCCATGGAGGTCTGGGGTGACGAAGAGACA
CTGGAGGagcaaaaagaaaagagaactgataataaagaaaaagctaaaag
gaaaaaatatgaaaaacgaATCAAAGAACTTCGAAAAGCAGTACGTACAA
GCACTTGGCAGAAGGACTTGTCGAAGCACGTGCACGACTATGATTCTGCG
AACGAGGTTTACGATGAAGAAGAGGACGTCTATACAAAGAAGTGTAAAAC
ATGTGATCATCAAATTACTTACGAGAAGATGTGAGAAAGAAATATCCCat
tgtcaaaagaaaaaagtaatcCTCGCAAACAGGTACACCCCTGTACTTGC
TTTCCGGGACAAAAGTATTCCCGAGAGTATATTTTTATTAGGAAATTGGT
ACCCTCTACAGGAGAT
Run BLAST on NCBI

protein sequence of TCONS_00060097-protein

>TCONS_00060097-protein ID=TCONS_00060097-protein|Name=TCONS_00060097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MSTLEDKPEDEKTKELSVAQKVRMERNRQRALLLRSSRLTSHPYASEEAK
TVHVGGSSVVDSGGGFFIDEDENEEEEMVNAADLPKQPGPIIDGSEDLCE
DCHKKFSDSYLLKHFDVQVCDACRSLQKDEAYKMITKTDARQKFCLKDCD
FDIREPPLKFIVRKNPHNDRWGDMKLYLELQVHKRAMEVWGDEETLEEQK
EKRTDNKEKAKRKKYEKRIKELRKAVRTSTWQKDLSKHVHDYDSANEVYD
EEEDVYTKKCKTCDHQITYEKM
Run BLAST on NCBI

transcript from alignment at scaffold_334:232291..243196+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060097 ID=TCONS_00060097|Name=TCONS_00060097|organism=Clytia hemisphaerica|type=transcript|length=10906bp|location=Sequence derived from alignment at scaffold_334:232291..243196+ (Clytia hemisphaerica)
CTAAATTATTATCAACATAACTTCGAGTTCACATTCAGATTGTTGCATTT
ATTTCCTTCTTTATTTTCTGTTCGCTTCCACTTTCCATTTTAGAAAGGtt
ataaaatgaaagaataagTAAAAATGTCTTGAAAGAAATTACCATCACCA
TAACGACATGTTCAATAACAAGATCCGTCTGCTCATACCTAACCATCGCA
CCATCATCGAAAACAACAAAAGCTTCACggtaaaataaaattgttttttg
tggCTGGCTAATTACAGTGcagtctctttaattcgaaccttttataactc
gaacctctttaaACCGAttgtttccttaactcgaacaagttttctgttCC
CTTCCGttattaacaatgccttataaaccttactccataactcgaacaaa
tttgtgttccccgtgcgtgtttgagttatggagccTCTACTGTAATGTGC
TCTGAGCCCCTCCccggttattaatttttgatttcgACCCCTGGACCTTT
TTAAGACCCCCATTAaagaattttggaaaatatttccaGCTATCGATAAA
AAAGCCccttattttgctgtaaatagGCAGGTTTCAGTCTATCATTACCT
TATGTCGGAGTATTTTGGAGGTAAATCTTAGAAACCCGTCAATTAGCACC
AGCCCCCTCCCCGACAAAGTTGAAAAAAAGCAATCCGTAGAGaaacaatt
ttgtaaaatgtCCTTTAATTATGAGACTCTTTCCTGGTTTAGACTTATCT
TAGAGTCTTTTGATATGAAGGAAAAGACCTTATCATCCGCATTCACCATG
TAAAGTTAACCATACTTCTTTAATCGTTTTACTCGACTTATGTTATCCCT
TTAGGTTTACTGCGTGGAAGTTGTTTGCGACGGCAAAGTAACCAATGTTG
AACATCGATACAGCGAGTTCTATGAACTGTACAGAAaggtaaaacaaaaa
tttttcaaacatatCTTCCCAAAACATCGCAAGTCtccaaacttttaaat
tttaataaagATCTAATCTGAAAGTCAAAGTCCTATGGTTTCTGAAAATA
CCATATTTCCATTATTTCCCAGTTTACCTAATACTACTTTTCAAGCTTTC
AAAGATGATCGCAGGAAAGATTGTCTTTCCACCCAAACGATTATTGAATA
ATAAAGATGTCAAGTTGATTGAAGCCAGAAGGAAAGGTCTCCAACAATAC
TTACAGGTAACTCACAAAAGCCTCGTTGGTCAAGCTGTTCTCCTAGTTAT
TGTATTTTGCTAACCCAGAACCCCCTATAAGACTACGATACGCACTTATA
CTTAACAGACTTTAGTTCATCTGGTAGGCGAATGAGggagaaaattcgaa
aaaacttCCAAACCTCTACTACTCGAATGTCTCAATAACTCGAACGGTTT
CCTTCCCCTGGGCCTGACTGTATTCGCGGTGATAAACCACCTAGTTTAAA
ATTGTTAATCAAATGATCAATGAataattgaatatttttgtttgacTTTT
GTTTGACTTTGTATCTATCTTCGCAGACGGTTTTGTACACGTTTCAAGAC
AACGTACCACCTCGTTTGTTGGATTTTCTCGGTATCCCTGATTATTATGA
TCAACAATACGATAATAATTTGTGAGTATAACCTTCCTAACATTTACTGG
AAAACCATCTATTGGCCAGTCATAGGTAATTAGTCTGTTGCAAAATAGGC
AAAATAAAAACTGAATAAGAATCAAATTGCATTCGTGTAAATCTCANTTT
GGCAACATCGGCCACTCATAAGTAATTATTCTGTTGCAAAATAGGCAAAA
TAAAAACTGAGTAAGAATCAAATTGCACCCGTGTAAATCTCATAACATCG
GACTCTAAAGCCTAaccttgttttcttgttttcctTACGTTAACAGCACG
ACTGACGAGTTGAATTCATCCTTGGATGGTGACCAGAAGTAAGAATGTTT
GCTGCACCTCATTTTGTGACTGActctttctttttgtcattccctacttt
taggttccaaataaacgcccccctgcttgttaatgttttcagctgtcaac
gagaaggccccttattttgctctaaatagcctgattttgacctatattta
ccttatttttgggttttcagaagtacaattttcaacccccccccGACAAT
taggggggcccgtttattaaaatcttgaaaattttccacccccccTCCCC
CGCCAGTTTATTTGGAACTTTTAAGAGTACTTGATGCtcgttaaaattat
tttttttgcctgaacaTCTTTTTATTTCGTTCTGTATTcgattcattgtt
ttttttcagtggaCATGACAATACATTTTCTGCAACCCAAAATATGATTT
GCTTTCGTAAGGATGCGTTCCTTGTTCCAACGCTAAAAGGTACAATTCTA
GATTTTGTAGATATAaaccagcggccgaggtagtgaatAGTGTCACTTCG
TAGGACACCCCTTAGATCATAATTTCACACCCTATTAAATTGGCACGGAA
TTCTTACATTCAAAATCTTCGATACATTTGACCAAGATATGTTAGCAATA
TAGATGACCAGAGTTTCAACGAAGTGTATCAAAGAGGAAAAACAGTCTTG
AAATCAAACTAAGGCTCCTGAAATTCTGAAGGacgaaagttttctttttc
gCTCAACCATCATCATATCTCAATATCTTTCTAGTTCGTAATATCAGCTA
CAAACAACAAATTACTGTTAACATCGTTTTAAGGCATTTCCAGCCTACAA
TCTTGCTTAAACCTTTGCTTTAACTTCTCTTCTTCGCAAAGTTAATAAAT
AAAAAGCGATTTCAGAGGATATGTTATGACCATTTACCTTACATTTTCAC
CTTTTCAGATTTGGAAGAAGAAAACACTCTTCCAGACATTATCAATAAAG
GTTGTTTAGAGGGCATCTATGGATAATTTGCTGTGCAACCATTCCAAGAT
AAAATTGTAAATAGATTTTTTGATATAGTGAAATTTGATATTTGAATGAT
TACTTAGTAATAGATTATTATAATTACCTGTTTCCATTTTCCGATTTAAA
TGATTGCTGATCTATGTGTTGCATTGAAATGTTAAAACCTTTCTAGTTAA
CCACCTTCATACTAATAATTTAgcggtttttttcttttagtgtaAAAAAG
TAAAGggacaaaaaagaaaagttacGGTATAATCGAATAAGAGATGGCGG
CACACATGGAGCGATTCAAGTTGTTGGTGGTCGGTGATTGCGGTGTGGGC
AAATCTTCTTTTGTTTGTGGCGTGGTTCATCAAACACCCTTGCAAAACGC
CCCTTCTACCATTGGATGCAACGTAGAAGTGTTACCTTACAGTTACGATG
ACAATGGACGACAACGGGATGTATTTTTGGAGTTTTGGGATGTTGGCGGA
TCATCTGGTCATCGTAACAGTCGTAGCATCTTTTATAATAACATCGATGG
TTTGATTGTTGTGCATGATTTATCAaacagaaaatcctttttaaatttac
aaaaatgggTTGGGGAAACATTCAACTCAAACCGTCAGGAATTCACGGGC
ATCACGGTTTCAGGGAGCGATGGTTCACAATATAATGATGACGAGTGTGA
TGCAATTTCCCATGGAGGTGGTAGAAAGTCAACTACCAATATCCCAGTGT
TAGTGTTGGGCACAAAGGAAGACCAATGCAACAATGCAGGAGAGCAGAAA
CGAAATGCGCACCATATTGGATTGTCTAATGATAGTGACGTCATCTTCTG
TTCCATGAACTGTCTACAAGAGGGGCAACTCCAAAAGAACAGTAATAAAT
GGCAGTCTTTGCATGCCTTCTTTCATAAAGTAATTGATGTTCGGTTGAAT
GGTGCAACACGTCGAAATACGAACCTCGAAAGTAATTCCGAGTTTAGAGG
CCGAAAGAAGATTTACTGATTTGCTTCAAAGAGCGATTTGAGAAGATTCA
GACTTATTACTTGATAATAATTTATTATACTTTTTAGATTTCAACAGAAT
TATTTAAATGATATAAATGCCTTGTTATAATTCACCATTAATTTGTTTCG
ATTTTTCTGACCCTTGAAGCTCTACAGATTGAAACTCAAATCGTATTTCT
TGTTTAGGTGAGAAAAATAGTAATACAAAATAATGAGCACGCTGGAGGAT
AAACCTGAAGATGAGAAAACCAAAGAACTGTCAGTTGCACAGAAGGTCCG
TATGGAGCGCAACCGCCAGCGTGCCTTGTTGCTCCGTTCTTCAAGGTTAA
CAAGTCACCCATATGCCAGTGAGGAGGCGAAGACAGTGCACGTAGGAGGG
TCAAGTGTCGTGGATAGTGGTGGAGGTTTCTTCAtcgatgaagatgaaaa
tgaagaagaagaaatggtCAACGCGGCTGACTTGCCCAAACAACCTGGTA
AGTTTTCTCACTGGTTAACTCTCCCTTTCGCATCACAACCAGACACAATA
ACACACAGGTGTCAGAAATATAAATACTATGCTTGAAATTATACAATTTA
GCCgttgtcttattttttaatttgaccTGCTTTTTTAAGAGAAACTGCGA
TTATACATTATTCATCTTTATATTTTAGGTCCTATCATAGATGGTAGTGA
AGATCTGTGTGAAGATTGTCACAAGAAATTTTCCGACTCCTATTTGTTGA
AACATTTTGATGTTCAAGTTTGTGATGCGTGTAGGTTAGTTTGCTTTGTT
ATCTTTACTTGATTCTAGATTCCAAAATTTATCTTAATAATATCTTAGAG
TTAAGTCCAAAGCACGTGGGCACGGGTTGATTACCAATTTGTTctagtaa
atgaaaaaagaaacgtCTCTAAGAGAAGTAAATTCCTTTTCTCTTTATGA
TTTATAAAACAGTAATTTCTGATCTGCGAGGGATTTTTTTGACTAGAGTT
GTAAAAATCCATGCGTAATCTATCGAATTTTTCGATTATCGAATtaatcg
aaactaatcgaagCTAATCGAAGCCATTATATTTCGATTAGTCGAAATAA
TCGAAGCCTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCATTCATGTTCAATGGATGGTCCGCTCAACGAtgtgtaaagcccg
aagggctagatctctagcttttgctgaaaattgtGTCGAAGTTAGATAGG
AAATCCTaactaagtcacgtgacattataatagaatttcagcgcttgacc
aatcagaagcttagCCAATTTTCGGAAACAATAGCAGAAATACTTTTTCC
AATATGtactcactttttttcttgcttaACCTGAGAACAGATTGtaattg
ttttctgcccaccacgctgaagctctaaagggatgggcgaaaacaaacaa
tctgacgactTTGTTGGACGGATTCATGCGAGACCGCGTTCAAAACATCC
TGGAAACTAGCGACACCGCTTCAAAAtttgttttgattttgctgcAAAGG
ATTATGGGTAGATTATTTTTGATAGATTTGGCGGGTGAGAAATGGCTCAA
ATGGGGACCCGTTTTTACAACGAGCACCTTGTTGTAAAACTTTCAAAGCG
GTATGGCCAATGTCCACAGATGTATATTTCGCATCGTACCtttagagcaa
agcgtgtcgaTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTCCGT
TTGTCCTAGATGTCCGTCGAACCTTTGCACCAACTCAACCCCTTTGAACA
TTTGATATGTGATTGATTTCGTTGGTTCTAGTGTTGGTGAAGGAGCATTT
GATGACAGAGAAAGACACCGAACAAAAAAactgatatttttcaaattgct
aATTTCAGCCTCGACAGCTGAATGAGCTGTTTTTGTACCGTACCGACGAA
TAATTCGAACAACTTTACCATATGTAAATTGACGCGATTTTGTGTCTAAG
AAACAGCATTCATCGTTGATTTTGATGTTGGTTTCGAGCGTTGAGGTGTT
GTTATTGAGCTGCTCAAAAAACGAGGTTTGGTTACTTGATTTCCATCTTT
CCATTCTGCTCGCAGCTGGGCAATAAATTTTGCCGTCGGTCAGAGACAGA
AATCGAGCAATATGATAGACTGTACCCTCGTATTCTACATACATTGGGTT
TGAGCGGTTTGttcgatttgttgattttcttgtgTTGGCATTTGATCCTT
GGTCCAGGAGATCTTTCATAGTTAAATTGGAATCATTCGCTAAGCAGTTG
GTGCTTCAAGAGGTATATCCGTTCTAGAAATGAAACAACACAGCATTGAA
AGTTGAATGTTACCTCTCGACCCAGtggtaaaaaaacaaacaaaagaaat
ggAAATACAGTCAAGCAAACTACTGAAATACGATAAAAAATAATGGACTT
TCCTCGCTTTCCTAACCCTGCTGGAAGAAATGCAACCCAGCTCGAAAAAA
CTTTCATCACATGTTATGAAACCCATTACTAGTAACAATATTGATTGAAT
AGTTTGAagatagtttgttcttatataaaaaaacgtgtatgaattTTTGG
GACACTGTAAAGTTTTTCGGGATTCCTTATAGTTAATATATATCAGCACA
GTCTTTTGGCATGTTTCTTGCAAGTGTGCTTTTTGACTAGAGTAGGCCAA
GTTCTGTAAAACCGGGGTATAcatcttttatttcaatttctcaCCCGGGT
TGAGATTATTCAGCTTCAATTTTCTGGGGTGGCTGGGTGATTTCTTCCCT
CGAATAGGCAAACACAAATTATTCTGCCATAGAATGTAAAGATTTTTAAG
CACCACACAAAACCATAGAACGACGACGAGGGACCGATAACAAACACCAA
AATGTTCATCACCAGGCTCGGAAGGTAAAAAGATCTTTCACGGCTATCAG
ATTTTAACCAAATTTGACCCGATAATACCTTGAGGGAAGAAATTTAATTT
CACGGTTGAGAGAATTTTCTGTTCAAAATATGgcttattttgccctaaaa
ataccaattttcgggtaatttctttcaatcataaaaatatttgtgtttCG
CGGATTTGCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAGAttatcgaatctcaatcgaaacCTATCGAAA
GTTAATCGAAGttatcgaacataatcgaatatatCGATATTAATCGAAGC
TATCGAACATTAATCGAAGCTTATCGATAGCtaatcgaagtaatcgaatg
gtaatcgaactaattgagaaaaaccttggaaaattcgattaattcgatta
cGGCTCGATAGTTTCGATAAATTCGATTTAAAATCGAattcgattttgtt
cgatagATTACGCCTGGACTACACTAACGGACTTTACATACATTTTATCT
GAATTCTACCAAAAGTTAACCAATCGAGACGCAACCTTTGCTTTCATTTT
AGAAGTTTGCAGAAAGACGAAGCGTACAAAATGATTACAAAGACTGATGC
AAGACAGgtatttacaattttcatgtgtctttttttgcttttcGTTGCCC
TCTCTCGAGGTTATCAGCTTTTTGCAGTATATTAATTTGAAACCTATTAA
CCAATATTCCGtctcaattttagaaattttgtctGAAAGATTGCGATTTC
GACATTCGAGAGCCTCCATTGAAGTTCATcgttcgcaaaaatcctcataA
TGATCGCTGGGGTGACATGAAGTTGTACCTGGAACTGCAGGTGAAACCTT
TCTTTGCGTAAACTCCAATAAAATTCCAAACAGAAAGAACTAGAAAGCGA
CAATAAAACTTGCATATTTTGCACCGTATAATGCcgtaaaaaattaataa
aagagATACACAAACAGAAACTAGTGAAAATTAATCAATTACACCGATAA
TTTGGAATTCTATTTTGTTATTCATTCTAACTTTCTCATTTTGTATCAGG
TTCACAAACGCGCCATGGAGGTCTGGGGTGACGAAGAGACACTGGAGGag
caaaaagaaaagagaactgataataaagaaaaagctaaaaggaaaaaata
tgaaaaacgaATCAAAGGTTTGTGACAGAggttatacatgtttttttaga
aGCATTGTTGCATAAAAATTTTAAGCATATCCTAAGCATTATCTGAGCCT
ATATTATCCGGCTGGAATTTACCTTAAATTTTGCTTAGTTcgagcaattt
tcagccttgtcAATCTCTTGATCTAAGCATCTCCCAGccagtttttgaat
ttttgtatgcttatacaAAACTTGTGCTTTTGGTAACCTCATTTGGTGGC
TTTCATTGATTGAGCCGTCAACTCGTTTTCAACTTGTCAACTCCTACTGG
AGTCTTTTTCATGCTTTACGAATATGTTAGGGGTTAAATGACATGATGAT
TAATGTGACGGGGAAGTATTGGATACATTAAACTGTACTTGACGTTCTTC
AACAGTTTGCCCTACCGTTCTCTACTTTTTCGTAAATTGGGCAGTTTCAA
GAAAACACCATTACTTCTGTGGACGActggggaaattttgaaaaggttCC
GGAAGATGCAGGATTTTCCTAATTATTTGGTCATCCGCATCAAAAAGATC
TTGAATGTTACGGAAATCATAAAGTTTTTCATAATTTAGTTGTTAcggaa
aatccattttttccaCAGGGGGGTAACGGACTATAACTGGAACCACCCAT
TTAGCCTAGACTACCAAGTCTTCTGATAGAATTATTGTTTACCATATTAT
TCTCTATCGGATGTAGAACTTCGAAAAGCAGTACGTACAAGCACTTGGCA
GAAGGACTTGTCGAAGCACGTGCACGACTATGATTCTGCGAACGAGGTTT
ACGATGAAGAAGAGGACGTCTATACAAAGAAGTGTAAAACATGTGATCAT
CAAATTACTTACGAGAAGATGTGAGAAAGAAATATCCCattgtcaaaaga
aaaaagtaatcCTCGCAAACAGGTACACCCCTGTACTTGCTTTCCGGGAC
AAAAGTATTCCCGAGAGTATATTTTTATTAGGAAATTGGTACCCTCTACA
GGAGAT

Coding sequence (CDS) from alignment at scaffold_334:232291..243196+

>TCONS_00060097 ID=TCONS_00060097|Name=TCONS_00060097|organism=Clytia hemisphaerica|type=CDS|length=4914bp|location=Sequence derived from alignment at scaffold_334:232291..243196+ (Clytia hemisphaerica)
ATGAGCACGCTGGAGGATAAACCTGAAGATGAGAAAACCAAAGAACTGTC
AGTTGCACAGAAGGTCCGTATGGAGCGCAACCGCCAGCGTGCCTTGTTGC
TCCGTTCTTCAAGGTTAACAAGTCACCCATATGCCAGTGAGGAGGCGAAG
ACAGTGCACGTAGGAGGGTCAAGTGTCGTGGATAGTGGTGGAGGTTTCTT
CAtcgatgaagatgaaaatgaagaagaagaaatggtCAACGCGGCTGACT
TGCCCAAACAACCTGGTCCTATCATAGATGGTAGTGAAGATCTGTGTGAA
GATTGTCACAAGAAATTTTCCGACTCCTATTTGTTGAAACATTTTGATGT
TCAAGTTTGTGATGCGTGTAGAAGTTTGCAGAAAGACGAAGCGTACAAAA
TGATTACAAAGACTGATGCAAGACAGaaattttgtctGAAAGATTGCGAT
TTCGACATTCGAGAGCCTCCATTGAAGTTCATcgttcgcaaaaatcctca
taATGATCGCTGGGGTGACATGAAGTTGTACCTGGAACTGCAGGTTCACA
AACGCGCCATGGAGGTCTGGGGTGACGAAGAGACACTGGAGGagcaaaaa
gaaaagagaactgataataaagaaaaagctaaaaggaaaaaatatgaaaa
acgaATCAAAGAACTTCGAAAAGCAGTACGTACAAGCACTTGGCAGAAGG
ACTTGTCGAAGCACGTGCACGACTATGATTCTGCGAACGAGGTTTACGAT
GAAGAAGAGGACGTCTATACAAAGAAGTGTAAAACATGTGATCATCAAAT
TACTTACGAGAAGATGTGAATGAGCACGCTGGAGGATAAACCTGAAGATG
AGAAAACCAAAGAACTGTCAGTTGCACAGAAGGTCCGTATGGAGCGCAAC
CGCCAGCGTGCCTTGTTGCTCCGTTCTTCAAGGTTAACAAGTCACCCATA
TGCCAGTGAGGAGGCGAAGACAGTGCACGTAGGAGGGTCAAGTGTCGTGG
ATAGTGGTGGAGGTTTCTTCAtcgatgaagatgaaaatgaagaagaagaa
atggtCAACGCGGCTGACTTGCCCAAACAACCTGGTCCTATCATAGATGG
TAGTGAAGATCTGTGTGAAGATTGTCACAAGAAATTTTCCGACTCCTATT
TGTTGAAACATTTTGATGTTCAAGTTTGTGATGCGTGTAGAAGTTTGCAG
AAAGACGAAGCGTACAAAATGATTACAAAGACTGATGCAAGACAGaaatt
ttgtctGAAAGATTGCGATTTCGACATTCGAGAGCCTCCATTGAAGTTCA
TcgttcgcaaaaatcctcataATGATCGCTGGGGTGACATGAAGTTGTAC
CTGGAACTGCAGGTTCACAAACGCGCCATGGAGGTCTGGGGTGACGAAGA
GACACTGGAGGagcaaaaagaaaagagaactgataataaagaaaaagcta
aaaggaaaaaatatgaaaaacgaATCAAAGAACTTCGAAAAGCAGTACGT
ACAAGCACTTGGCAGAAGGACTTGTCGAAGCACGTGCACGACTATGATTC
TGCGAACGAGGTTTACGATGAAGAAGAGGACGTCTATACAAAGAAGTGTA
AAACATGTGATCATCAAATTACTTACGAGAAGATGTGAATGAGCACGCTG
GAGGATAAACCTGAAGATGAGAAAACCAAAGAACTGTCAGTTGCACAGAA
GGTCCGTATGGAGCGCAACCGCCAGCGTGCCTTGTTGCTCCGTTCTTCAA
GGTTAACAAGTCACCCATATGCCAGTGAGGAGGCGAAGACAGTGCACGTA
GGAGGGTCAAGTGTCGTGGATAGTGGTGGAGGTTTCTTCAtcgatgaaga
tgaaaatgaagaagaagaaatggtCAACGCGGCTGACTTGCCCAAACAAC
CTGGTCCTATCATAGATGGTAGTGAAGATCTGTGTGAAGATTGTCACAAG
AAATTTTCCGACTCCTATTTGTTGAAACATTTTGATGTTCAAGTTTGTGA
TGCGTGTAGAAGTTTGCAGAAAGACGAAGCGTACAAAATGATTACAAAGA
CTGATGCAAGACAGaaattttgtctGAAAGATTGCGATTTCGACATTCGA
GAGCCTCCATTGAAGTTCATcgttcgcaaaaatcctcataATGATCGCTG
GGGTGACATGAAGTTGTACCTGGAACTGCAGGTTCACAAACGCGCCATGG
AGGTCTGGGGTGACGAAGAGACACTGGAGGagcaaaaagaaaagagaact
gataataaagaaaaagctaaaaggaaaaaatatgaaaaacgaATCAAAGA
ACTTCGAAAAGCAGTACGTACAAGCACTTGGCAGAAGGACTTGTCGAAGC
ACGTGCACGACTATGATTCTGCGAACGAGGTTTACGATGAAGAAGAGGAC
GTCTATACAAAGAAGTGTAAAACATGTGATCATCAAATTACTTACGAGAA
GATGTGAATGAGCACGCTGGAGGATAAACCTGAAGATGAGAAAACCAAAG
AACTGTCAGTTGCACAGAAGGTCCGTATGGAGCGCAACCGCCAGCGTGCC
TTGTTGCTCCGTTCTTCAAGGTTAACAAGTCACCCATATGCCAGTGAGGA
GGCGAAGACAGTGCACGTAGGAGGGTCAAGTGTCGTGGATAGTGGTGGAG
GTTTCTTCAtcgatgaagatgaaaatgaagaagaagaaatggtCAACGCG
GCTGACTTGCCCAAACAACCTGGTCCTATCATAGATGGTAGTGAAGATCT
GTGTGAAGATTGTCACAAGAAATTTTCCGACTCCTATTTGTTGAAACATT
TTGATGTTCAAGTTTGTGATGCGTGTAGAAGTTTGCAGAAAGACGAAGCG
TACAAAATGATTACAAAGACTGATGCAAGACAGaaattttgtctGAAAGA
TTGCGATTTCGACATTCGAGAGCCTCCATTGAAGTTCATcgttcgcaaaa
atcctcataATGATCGCTGGGGTGACATGAAGTTGTACCTGGAACTGCAG
GTTCACAAACGCGCCATGGAGGTCTGGGGTGACGAAGAGACACTGGAGGa
gcaaaaagaaaagagaactgataataaagaaaaagctaaaaggaaaaaat
atgaaaaacgaATCAAAGAACTTCGAAAAGCAGTACGTACAAGCACTTGG
CAGAAGGACTTGTCGAAGCACGTGCACGACTATGATTCTGCGAACGAGGT
TTACGATGAAGAAGAGGACGTCTATACAAAGAAGTGTAAAACATGTGATC
ATCAAATTACTTACGAGAAGATGTGAATGAGCACGCTGGAGGATAAACCT
GAAGATGAGAAAACCAAAGAACTGTCAGTTGCACAGAAGGTCCGTATGGA
GCGCAACCGCCAGCGTGCCTTGTTGCTCCGTTCTTCAAGGTTAACAAGTC
ACCCATATGCCAGTGAGGAGGCGAAGACAGTGCACGTAGGAGGGTCAAGT
GTCGTGGATAGTGGTGGAGGTTTCTTCAtcgatgaagatgaaaatgaaga
agaagaaatggtCAACGCGGCTGACTTGCCCAAACAACCTGGTCCTATCA
TAGATGGTAGTGAAGATCTGTGTGAAGATTGTCACAAGAAATTTTCCGAC
TCCTATTTGTTGAAACATTTTGATGTTCAAGTTTGTGATGCGTGTAGAAG
TTTGCAGAAAGACGAAGCGTACAAAATGATTACAAAGACTGATGCAAGAC
AGaaattttgtctGAAAGATTGCGATTTCGACATTCGAGAGCCTCCATTG
AAGTTCATcgttcgcaaaaatcctcataATGATCGCTGGGGTGACATGAA
GTTGTACCTGGAACTGCAGGTTCACAAACGCGCCATGGAGGTCTGGGGTG
ACGAAGAGACACTGGAGGagcaaaaagaaaagagaactgataataaagaa
aaagctaaaaggaaaaaatatgaaaaacgaATCAAAGAACTTCGAAAAGC
AGTACGTACAAGCACTTGGCAGAAGGACTTGTCGAAGCACGTGCACGACT
ATGATTCTGCGAACGAGGTTTACGATGAAGAAGAGGACGTCTATACAAAG
AAGTGTAAAACATGTGATCATCAAATTACTTACGAGAAGATGTGAATGAG
CACGCTGGAGGATAAACCTGAAGATGAGAAAACCAAAGAACTGTCAGTTG
CACAGAAGGTCCGTATGGAGCGCAACCGCCAGCGTGCCTTGTTGCTCCGT
TCTTCAAGGTTAACAAGTCACCCATATGCCAGTGAGGAGGCGAAGACAGT
GCACGTAGGAGGGTCAAGTGTCGTGGATAGTGGTGGAGGTTTCTTCAtcg
atgaagatgaaaatgaagaagaagaaatggtCAACGCGGCTGACTTGCCC
AAACAACCTGGTCCTATCATAGATGGTAGTGAAGATCTGTGTGAAGATTG
TCACAAGAAATTTTCCGACTCCTATTTGTTGAAACATTTTGATGTTCAAG
TTTGTGATGCGTGTAGAAGTTTGCAGAAAGACGAAGCGTACAAAATGATT
ACAAAGACTGATGCAAGACAGaaattttgtctGAAAGATTGCGATTTCGA
CATTCGAGAGCCTCCATTGAAGTTCATcgttcgcaaaaatcctcataATG
ATCGCTGGGGTGACATGAAGTTGTACCTGGAACTGCAGGTTCACAAACGC
GCCATGGAGGTCTGGGGTGACGAAGAGACACTGGAGGagcaaaaagaaaa
gagaactgataataaagaaaaagctaaaaggaaaaaatatgaaaaacgaA
TCAAAGAACTTCGAAAAGCAGTACGTACAAGCACTTGGCAGAAGGACTTG
TCGAAGCACGTGCACGACTATGATTCTGCGAACGAGGTTTACGATGAAGA
AGAGGACGTCTATACAAAGAAGTGTAAAACATGTGATCATCAAATTACTT
ACGAGAAGATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037812XLOC_037812Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060097-proteinTCONS_00060097-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060097-exon-scaffold_334-1491911889:232291..232519TCONS_00060097-exon-scaffold_334-1491911889:232291..232519Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:232291..232519TCONS_00060097-exon-scaffold_334-1510915933:232291..232519Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:232291..232519TCONS_00060097-exon-scaffold_334-1575043694:232291..232519Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:233145..233228TCONS_00060097-exon-scaffold_334-1491911889:233145..233228Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:233145..233228TCONS_00060097-exon-scaffold_334-1510915933:233145..233228Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:233145..233228TCONS_00060097-exon-scaffold_334-1575043694:233145..233228Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:233386..233496TCONS_00060097-exon-scaffold_334-1491911889:233386..233496Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:233386..233496TCONS_00060097-exon-scaffold_334-1510915933:233386..233496Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:233386..233496TCONS_00060097-exon-scaffold_334-1575043694:233386..233496Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:233817..233911TCONS_00060097-exon-scaffold_334-1491911889:233817..233911Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:233817..233911TCONS_00060097-exon-scaffold_334-1510915933:233817..233911Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:233817..233911TCONS_00060097-exon-scaffold_334-1575043694:233817..233911Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:234187..234228TCONS_00060097-exon-scaffold_334-1491911889:234187..234228Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:234187..234228TCONS_00060097-exon-scaffold_334-1510915933:234187..234228Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:234187..234228TCONS_00060097-exon-scaffold_334-1575043694:234187..234228Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:234600..234679TCONS_00060097-exon-scaffold_334-1491911889:234600..234679Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:234600..234679TCONS_00060097-exon-scaffold_334-1510915933:234600..234679Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:234600..234679TCONS_00060097-exon-scaffold_334-1575043694:234600..234679Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:235149..236687TCONS_00060097-exon-scaffold_334-1491911889:235149..236687Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:235149..236687TCONS_00060097-exon-scaffold_334-1510915933:235149..236687Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:235149..236687TCONS_00060097-exon-scaffold_334-1575043694:235149..236687Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:236869..236974TCONS_00060097-exon-scaffold_334-1491911889:236869..236974Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:236869..236974TCONS_00060097-exon-scaffold_334-1510915933:236869..236974Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:236869..236974TCONS_00060097-exon-scaffold_334-1575043694:236869..236974Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:241593..241647TCONS_00060097-exon-scaffold_334-1491911889:241593..241647Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:241593..241647TCONS_00060097-exon-scaffold_334-1510915933:241593..241647Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:241593..241647TCONS_00060097-exon-scaffold_334-1575043694:241593..241647Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:241764..241880TCONS_00060097-exon-scaffold_334-1491911889:241764..241880Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:241764..241880TCONS_00060097-exon-scaffold_334-1510915933:241764..241880Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:241764..241880TCONS_00060097-exon-scaffold_334-1575043694:241764..241880Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:242090..242207TCONS_00060097-exon-scaffold_334-1491911889:242090..242207Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:242090..242207TCONS_00060097-exon-scaffold_334-1510915933:242090..242207Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:242090..242207TCONS_00060097-exon-scaffold_334-1575043694:242090..242207Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1491911889:242907..243196TCONS_00060097-exon-scaffold_334-1491911889:242907..243196Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1510915933:242907..243196TCONS_00060097-exon-scaffold_334-1510915933:242907..243196Clytia hemisphaericaexon
TCONS_00060097-exon-scaffold_334-1575043694:242907..243196TCONS_00060097-exon-scaffold_334-1575043694:242907..243196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:232291..243196 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.9007	47.3765	44.3391	44.2617	22.8748	19.0892	22.1707	20.4348	19.3863	18.0477	16.632	16.1788	15.0377	13.9206	11.4299	13.7638	18.6576	17.9238	11.8527	9.76001	14.7249	12.262	27.0743	22.6599	29.4749	26.408	12.7431	11.0705	9.97531	11.0877
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022656XPA_C
IPR022652Znf_XPA_CS
IPR000465XPA
IPR009061DNA-bd_dom_put
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
cellular_component GO:0005634 nucleus
molecular_function GO:0003684 damaged DNA binding
Blast
[Close]
BLAST of TCONS_00060097 vs. Swiss-Prot (Human)
Match: XPA (DNA repair protein complementing XP-A cells OS=Homo sapiens GN=XPA PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 5.847e-55
Identity = 100/186 (53.76%), Postives = 142/186 (76.34%), Query Frame = 2 
Query: 2174 QPGPIIDGSEDLCEDCHKKFSDSYLLKHFDVQVCDACRSLQKDEAYKMITKTDARQKFCLKDCDFDIREPPLKFIVRKNPHNDRWGDMKLYLELQVHKRAMEVWGDEETLEEQKEKRTDNXXXXXXXXXXXXXXXXXXAVRTSTWQKDLSKHVHDYDSANEVYDEEEDVYTKKCKTCDHQITYEKM 2731
            QPGP+++    +CE+C K+F DSYL+ HFD+  CD CR    D+ +K+ITKT+A+Q++ LKDCD + REPPLKFIV+KNPH+ +WGDMKLYL+LQ+ KR++EVWG +E LEE KE R +N+EK K+KK++K++KELR+AVR+S W+++   H H+Y     +   E+D+Y K C  C H++TYEKM
Sbjct:   93 QPGPVMEFDYVICEECGKEFMDSYLMNHFDLPTCDNCRD--ADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIVHQHEYGPEENL---EDDMYRKTCTMCGHELTYEKM 273
The following BLAST results are available for this feature:
BLAST of TCONS_00060097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPA5.847e-5553.76DNA repair protein complementing XP-A cells OS=Hom... [more]
back to top