TCONS_00060097-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060097-protein
Unique NameTCONS_00060097-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060097-protein ID=TCONS_00060097-protein|Name=TCONS_00060097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MSTLEDKPEDEKTKELSVAQKVRMERNRQRALLLRSSRLTSHPYASEEAK
TVHVGGSSVVDSGGGFFIDEDENEEEEMVNAADLPKQPGPIIDGSEDLCE
DCHKKFSDSYLLKHFDVQVCDACRSLQKDEAYKMITKTDARQKFCLKDCD
FDIREPPLKFIVRKNPHNDRWGDMKLYLELQVHKRAMEVWGDEETLEEQK
EKRTDNKEKAKRKKYEKRIKELRKAVRTSTWQKDLSKHVHDYDSANEVYD
EEEDVYTKKCKTCDHQITYEKM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037812XLOC_037812Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060097TCONS_00060097Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022656XPA_C
IPR022652Znf_XPA_CS
IPR000465XPA
IPR009061DNA-bd_dom_put
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
cellular_component GO:0005634 nucleus
molecular_function GO:0003684 damaged DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..213
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 96..125
IPR022656XPA C- terminalGENE3D3.90.530.10coord: 95..203
e-value: 9.6E-37
score: 125.0
IPR022656XPA C- terminalPFAMPF05181XPA_Ccoord: 132..182
e-value: 8.8E-24
score: 83.1
IPR022652Zinc finger, XPA-type, conserved sitePFAMPF01286XPA_Ncoord: 98..124
e-value: 7.8E-12
score: 44.9
IPR022652Zinc finger, XPA-type, conserved sitePROSITEPS00752XPA_1coord: 99..123
IPR000465XPATIGRFAMTIGR00598TIGR00598coord: 99..272
e-value: 3.1E-63
score: 210.5
IPR009061Putative DNA-binding domainSUPERFAMILY46955Putative DNA-binding domaincoord: 131..203

Blast
[Close]
BLAST of TCONS_00060097-protein vs. Swiss-Prot (Human)
Match: XPA (DNA repair protein complementing XP-A cells OS=Homo sapiens GN=XPA PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 8.326e-80
Identity = 126/267 (47.19%), Postives = 187/267 (70.04%), Query Frame = 0 
Query:   11 EKTKELSVAQKVRMERNRQRALLLRSSRLTSHPYASEEAKTVHV-----GGSSVVDSGGGFFIDEDENEEEEMVNAADLPKQPGPIIDGSEDLCEDCHKKFSDSYLLKHFDVQVCDACRSLQKDEAYKMITKTDARQKFCLKDCDFDIREPPLKFIVRKNPHNDRWGDMKLYLELQVHKRAMEVWGDEETLEEQKEKRTDNKEKAKRKKYEKRIKELRKAVRTSTWQKDLSKHVHDYDSANEVYDEEEDVYTKKCKTCDHQITYEKM 272
            E+  EL  + +  +ER RQRAL+LR +RL + PY++  A              ++D+GGGF ++E+E EE+++     +  QPGP+++    +CE+C K+F DSYL+ HFD+  CD CR    D+ +K+ITKT+A+Q++ LKDCD + REPPLKFIV+KNPH+ +WGDMKLYL+LQ+ KR++EVWG +E LEE KE R +N+EK K+KK++K++KELR+AVR+S W+++   H H+Y     +   E+D+Y K C  C H++TYEKM
Sbjct:   15 EQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMANVKAAPKIIDTGGGFILEEEEEEEQKI---GKVVHQPGPVMEFDYVICEECGKEFMDSYLMNHFDLPTCDNCRD--ADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIVHQHEYGPEENL---EDDMYRKTCTMCGHELTYEKM 273
The following BLAST results are available for this feature:
BLAST of TCONS_00060097-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPA8.326e-8047.19DNA repair protein complementing XP-A cells OS=Hom... [more]
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