TCONS_00059817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059817
Unique NameTCONS_00059817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059817 ID=TCONS_00059817|Name=TCONS_00059817|organism=Clytia hemisphaerica|type=transcript|length=2743bp
tatttgttGTACCTTTCTTTTCAAAGAGAAAGTCGCTCTAAGTAAGGact
attttacaaaatattatcACAAAATTATCTATTCCGTAATAATAACAACA
CAGTGTCTGGTTCAGGGTATGACAACCTTTTTCACAGACCAACTGGGACC
CCTTCTCATCAAATAAACCAAACCTCGCTTCAAAATATTATTCCATTTGT
CCTATCCCctctgaattttctgacttgaaaaaaatggattttaaacATAG
TGATTTAAACCCCCGGCCATAAAAACATATGGGAatatatcaatccccat
cgagtttcagttcgttatttttacccccactggctagAAAactcctaccg
ggtctgtgagaaggcgTGTTGTATGAGGAAAATCAGGCTGTTATCTACTG
TCGATGAAAAGTATATACTCCCGATATCAAATTGCTCAAATTACACTCTC
AAAATACACTCCTCTACTCATAAAAGGAGCTACAAACCAACATTGCTAAA
ATAGTAGGGAGAAATTAAGCAATTAAAAATAGTGTTGTTTTGTTCAGCCA
AAAGCAGCtattttccacttttttcactttttgaagcttgatatctcgag
ttaggtagaGAAATCACccatactcgcaatatatctctaatcttaatttt
tttagagctttccaaaaatatacaacaggtctctcttttctcaagctaaa
atatttattaaattttgaccctatgatttttgcctgggactgtcatattt
gtccgaaaatcacaccaaaatatccaaaaaaaattggcacctatgttatt
ttgattcccttacctttccaaaaaatgtaaaacaagtgctttgaccgaGA
GGAAGTTGTGACTTGGAttgtgaagaaaaaaatagatGTACTTTAgccat
ttctaaaaaatctaaaatttcgttttttcaaaaaatctaaaattccgcaa
aaataatcaaaaagtaTGAATGTTACGATATTTAAACTACGGAAGGCAAA
ACATTTTTCAGCCTTGAGCAAAATGAGAGAAATATCTTCGTTACTTGTTA
ACACATCAACTGTCAATAGCATCTCTTTCAGCGATAAGTGTAAACGcttt
gctttcttttttttcctatTTGTAGTgtctaaatttgaaataaaaatagt
gTTTTAAGACACCACTGAATAACCTATTGTTCAATTTACACAATTTCAAT
AATGCACCCCAAATCTACCAAGTATTTAATTTGTAAGTGGATGAGAAATA
AAGTCATTTTAAGCTGAATGTAacatattttttggaatttaacTAAATAT
CTCCTCAGGAACATATTCAGTAGTTGTGGTCGTGCttgttgttgtagttg
tagGTGTGGTCGTTGTGGTTGTAGGAGTGGTCGttgtggtcgttgttgta
gtcGGAGTGGTTGTTGTGGTTGTAGGAGTGGTCGTTTTCGTTGTTgtagg
agtggtcgttgtagtAGTTGGAGTAGTCGTTGTCGTTGTAGGAGTGGTCA
TTGTAGTTGTAGGTGTGTTCTTTGTTGTAGTTGTAGTTGTAggtgtggtt
gttgttgttggagtggtcgttgtggttgtaggagtggtcgttgtagttgt
aggagtggtcgttgtagtagttggagtggtcgttgttgttgttgtaggag
tggtcgttgtagTAGTttgagtggtcgttgttgttgtaggCCTGGTCGTt
ggagtggtcgttgtagttGTGGTCGTTTTCTTTATCAAACACTCGTCATT
TCGACAATACCTAGCGTAGTAACAATATTGATTGCAATAGTCTGCCACAA
TTCTATCTCGATAAAGCCCACGGTCAATGTAACGAGAATTAGGACCTGTC
CAGCTCCATTTACATAAGCATTCACCAGTAGTCAAACATTGACCTTTACC
AAACAAATGACATTTAACGTTGCATTTCTTTTTCGGTTTCGGCGTAACCA
CGCTTACACATTTAGGGTTTCGATACCACCTGTTGTAGTGACAGGATGTC
GTACAATAATCAGCTGTGATGCGGTTTCGATTCGTACCTTTGTTAACATA
TTGTGAATTAGGACCCGTACATTTCCATCTGCATAAGCAGCGACCGTTCG
GTAAACACCGGCCGTACGCTTTATTGTTTTTTTCGCATCTAGAATGACAT
TTGGTTGATGGAGCTTTGGTTGTTGTCGTTGTagtggtggtcgttgtcgt
CGTGGGTTTTGAAGTTGTCGAAAGAAAGGGTGTACAGACACGTGACCACG
AAGGCGTGTAGTGACATGGTACTCGACAATGATCTGCTTTAACTCTCTTA
TCTAGTGACCCTCCAGTGAGAGATACTGCATTAGGTCCAGTCCATCCCCA
CCAACATAGGCAACGACCATCAGGTTGACAGACACCAGTACCTGGTGTAG
GATGCTCACAGCGTTGGTCGCAGTGTCTCCTGACTCTGCCTCGATGACTG
CCAACAACTTGACGTGTTCTATATCTCCTTGACGAGTGACCATAGCTATG
GTATCTTGCCAAAACTATACCAATGCATAATGCAAAGATAATTGTGATTA
AGGTCGACTggttcatttttgaaatcagcCACGACAATGTCTTGATTTAA
AGtgacaagtaaaaaaaattctgaattcTCCCTTTAAAATCCAACAGTTT
TGTAAACCGCTTGTAGTTCTTGTGAACCTCTTGTGAACCTTCTTTTCAGC
TAGTCAAATACGGAAATGaagtgattttgaaaaatgtccaaat
Run BLAST on NCBI

transcript from alignment at scaffold_331:669307..672820+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059817 ID=TCONS_00059817|Name=TCONS_00059817|organism=Clytia hemisphaerica|type=transcript|length=3514bp|location=Sequence derived from alignment at scaffold_331:669307..672820+ (Clytia hemisphaerica)
tatttgttGTACCTTTCTTTTCAAAGAGAAAGTCGCTCTAAGTAAGGact
attttacaaaatattatcACAAAATTATCTATTCCGTAATAATAACAACA
CAGTGTCTGGTTCAGGGTATGACAACCTTTTTCACAGACCAACTGGGACC
CCTTCTCATCAAATAAACCAAACCTCGCTTCAAAATATTATTCCATTTGT
CCTATCCCctctgaattttctgacttgaaaaaaatggattttaaacATAG
TGATTTAAACCCCCGGCCATAAAAACATATGGGAatatatcaatccccat
cgagtttcagttcgttatttttacccccactggctagAAAactcctaccg
ggtctgtgagaaggcgTGTTGTATGAGGAAAATCAGGCTGTTATCTACTG
TCGATGAAAAGTATATACTCCCGATATCAAATTGCTCAAATTACACTCTC
AAAATACACTCCTCTACTCATAAAAGGAGCTACAAACCAACATTGCTAAA
ATAGTAGGGAGAAATTAAGCAATTAAAAATAGTGTTGTTTTGTTCAGCCA
AAAGCAGCtattttccacttttttcactttttgaagcttgatatctcgag
ttaggtagaGAAATCACccatactcgcaatatatctctaatcttaatttt
tttagagctttccaaaaatatacaacaggtctctcttttctcaagctaaa
atatttattaaattttgaccctatgatttttgcctgggactgtcatattt
gtccgaaaatcacaccaaaatatccaaaaaaaattggcacctatgttatt
ttgattcccttacctttccaaaaaatgtaaaacaagtgctttgaccgaGA
GGAAGTTGTGACTTGGAttgtgaagaaaaaaatagatGTACTTTAgccat
ttctaaaaaatctaaaatttcgttttttcaaaaaatctaaaattccgcaa
aaataatcaaaaagtaTGAATGTTACGATATTTAAACTACGGAAGGCAAA
ACATTTTTCAGCCTTGAGCAAAATGAGAGAAATATCTTCGTTACTTGTTA
ACACATCAACTGTCAATAGCATCTCTTTCAGCGATAAGTGTAAACGcttt
gctttcttttttttcctatTTGTAGTgtctaaatttgaaataaaaatagt
gTTTTAAGACACCACTGAATAACCTATTGTTCAATTTACACAATTTCAAT
AATGCACCCCAAATCTACCAAGTATTTAATTTGTAAGTGGATGAGAAATA
AAGTCATTTTAAGCTGAATGTAacatattttttggaatttaacTAAATAT
CTCCTCAGGAACATATTCAGTAGTTGTGGTCGTGCttgttgttgtagttg
tagGTGTGGTCGTTGTGGTTGTAGGAGTGGTCGttgtggtcgttgttgta
gtcGGAGTGGTTGTTGTGGTTGTAGGAGTGGTCGTTTTCGTTGTTgtagg
agtggtcgttgtagtAGTTGGAGTAGTCGTTGTCGTTGTAGGAGTGGTCA
TTGTAGTTGTAGGTGTGTTCTTTGTTGTAGTTGTAGTTGTAggtgtggtt
gttgttgttggagtggtcgttgtggttgtaggagtggtcgttgtagttgt
aggagtggtcgttgtagtagttggagtggtcgttgttgttgttgtaggag
tggtcgttgtaggtgtggtcgttgttgtagttggagtggtcgttgtggtt
gtaggagtggtcgttgtagtagttggagtggtcgttgtagtagttggagt
ggtcgttgtagtagttggagtggtcgttgtagtagttggagtggtcgttg
tagtAGTTGGAGTAGTCGTTGTCGTTgtaggagtggtcgttgtagttgta
gttgtaggagtggtcgttgtagtagttggagtggtcgttgtagtagttgg
agtggtcgttgtagtAGTTGTAGTTGTAggtgtggttgttgttgttgtag
ttgtaggtgtggttgttgttgttgtaggaGTGGTCGTGGTAGTAGTTGGA
GTAGTCGTTGTAGTAGTTGGAGTAGTCGTTGTCGTTgtaggagtggtcgt
tgtagttgtagttataggagtggtcgttgtagtagttggagtggtcgttg
tagtAGTTGGAGTGGTCGTAGTAGTTGTAGGTGTGGTCGTAGTTGTAGGA
GTGGTCGCTGTAGTAGTTGTAGTTGTAggtgtggttgttgttgttgtagt
tgtagGTGTGGTTGttgtggtcgttgttgttgtagttgtaggtgtggtcg
ttgttgtagttggaGTGGTCGTTGTGGTTGTAGGAGTGGTCGTGGTAGTT
GTAGGTGTGGTCGTTGTAGGTGTGGTCGTTGTAGTTGTAGGTGTGGTCGT
TGTCGTTTTTGTTGTAGGAGTGGAAGTTGTTGTAGTTGTAGAAGTGGGAG
TGGTCGTTGTAGTAGTTTGAGTGGTCGTTGTAGTAGTttgagtggtcgtt
gttgttgtaggCCTGGTCGTtggagtggtcgttgtagttGTGGTCGTTTT
CTTTATCAAACACTCGTCATTTCGACAATACCTAGCGTAGTAACAATATT
GATTGCAATAGTCTGCCACAATTCTATCTCGATAAAGCCCACGGTCAATG
TAACGAGAATTAGGACCTGTCCAGCTCCATTTACATAAGCATTCACCAGT
AGTCAAACATTGACCTTTACCAAACAAATGACATTTAACGTTGCATTTCT
TTTTCGGTTTCGGCGTAACCACGCTTACACATTTAGGGTTTCGATACCAC
CTGTTGTAGTGACAGGATGTCGTACAATAATCAGCTGTGATGCGGTTTCG
ATTCGTACCTTTGTTAACATATTGTGAATTAGGACCCGTACATTTCCATC
TGCATAAGCAGCGACCGTTCGGTAAACACCGGCCGTACGCTTTATTGTTT
TTTTCGCATCTAGAATGACATTTGGTTGATGGAGCTTTGGTTGTTGTCGT
TGTagtggtggtcgttgtcgtCGTGGGTTTTGAAGTTGTCGAAAGAAAGG
GTGTACAGACACGTGACCACGAAGGCGTGTAGTGACATGGTACTCGACAA
TGATCTGCTTTAACTCTCTTATCTAGTGACCCTCCAGTGAGAGATACTGC
ATTAGGTCCAGTCCATCCCCACCAACATAGGCAACGACCATCAGGTTGAC
AGACACCAGTACCTGGTGTAGGATGCTCACAGCGTTGGTCGCAGTGTCTC
CTGACTCTGCCTCGATGACTGCCAACAACTTGACGTGTTCTATATCTCCT
TGACGAGTGACCATAGCTATGGTATCTTGCCAAAACTATACCAATGCATA
ATGCAAAGATAATTGTGATTAAGGTCGACTggttcatttttgaaatcagc
CACGACAATGTCTTGATTTAAAGtgacaagtaaaaaaaattctgaattcT
CCCTTTAAAATCCAACAGTTTTGTAAACCGCTTGTAGTTCTTGTGAACCT
CTTGTGAACCTTCTTTTCAGCTAGTCAAATACGGAAATGaagtgattttg
aaaaatgtccaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037627XLOC_037627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059817-exon-scaffold_331-1491911889:669307..670968TCONS_00059817-exon-scaffold_331-1491911889:669307..670968Clytia hemisphaericaexon
TCONS_00059817-exon-scaffold_331-1510915933:669307..670968TCONS_00059817-exon-scaffold_331-1510915933:669307..670968Clytia hemisphaericaexon
TCONS_00059817-exon-scaffold_331-1575043694:669307..670968TCONS_00059817-exon-scaffold_331-1575043694:669307..670968Clytia hemisphaericaexon
TCONS_00059817-exon-scaffold_331-1491911889:671740..672820TCONS_00059817-exon-scaffold_331-1491911889:671740..672820Clytia hemisphaericaexon
TCONS_00059817-exon-scaffold_331-1510915933:671740..672820TCONS_00059817-exon-scaffold_331-1510915933:671740..672820Clytia hemisphaericaexon
TCONS_00059817-exon-scaffold_331-1575043694:671740..672820TCONS_00059817-exon-scaffold_331-1575043694:671740..672820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:669307..672820 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0265362	0	0	0	0	0	0	0.0881812	0.954863	1.54043	0.182226	1.24283	0.179423	0.0389303	0.0987964	0	0.0458425	0	0.169819	0	0.135617	0.158465	0	0	0	0	0.0832607	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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