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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059813 ID=TCONS_00059813|Name=TCONS_00059813|organism=Clytia hemisphaerica|type=transcript|length=2044bp
AAAAACTCATGTATGTAGATTATgtttagaaaaaaacgaaatcaaaatTC
AGACGTTTAGACTTTTAGATGAACAGCCAACTATTCTTATAGTTTGAAGT
ACGGGCGACAAGACTTCAAATTGATTATTAGCGAAAaagaacgaagaaga
acaaGATAGGAAGAGGTGAGCGAGAATCAACaaagaaaaggagaaaaagT
TAATCAACAAACCAGCCATGGCAAAACATCACAAGATCACAGTGATCGTA
GTCCTCCTCTTTACCTTTCTGTTCGCAGCATGCAATGTCTACAAACTTTT
AACACAAACTGAAGAAGACATCAAACAGTTCATGTGTCACCATGTCAAAC
ATGACGACCACAAGGATATGTTACGCCGGCAGAAACATCACCGTACCGAA
GCTGTCCGATCACACACCATCGATGAAGAAGATGAATCATTCGAAGACAA
AGTTCGAGATGGTTTGGACAAGAAAATCAAGGAATCTCACTACCAGCACA
AATTGAAAGCTGAGCATCGATGTCGACATCATATCACAGTTGACCAGATC
CGTGGAATGAAGTTCCTATCCAAACTTGGTATCATTTTCTCCTTGGTATC
CATTGTAGCAACATTGATCGCCTTTGGATCCATCAGATCTGTTGAAACAC
CAAATGCACGTTTCTTCTTGATCCCATACATCTTTGCACACACCTTGTTG
ATTGCTTTTGAAATCTACGCTTGCATCCGTACCCAGGAATTGGTCCACAA
ATTACCAGTCCTTTACATCGTCATGGTGGTTGTATCCTCCATCATGCTTA
TCTCTTTCATTTCATTGGTCAAGATTTATTACAATGCATTATCCAAAGCT
GGCCGCAAAGGCGGATCCGTCCCCAAAGCAAAAGAAGCATTTGATTACGC
GATCATGCCTGAGGAAAAAGACGCATCAGAAGCCTGAACAATGATGATGA
AAACACCAAAATAACATTGTTGCTTTTTTCCACGCCATTCTTAATATAAA
CCAGGTGCCAGTAAATTTTGGATATAAAGGGCTTTAAATCAGCTTTTCTT
TAgctgttttttttggaatttgagAGTgtgattgttcttaatttgttctt
aaagattTTCTTCTGATTGTTTAAACTGATAAAAACCGTAGTCTCAACAC
TGATCTGCTAATGTTAGATAAACGTTTTAGTGGTAGAATTTAGCTCGGTA
TGAATACAAACCCAAGAATTTTAGTATTCCAATCCCTTTGAATTTCGCAC
TGATCGCACTTTTCTATTAAATGTGTATGACAAAGCACTTTAAGTgcaat
ttatttaatttaaacTTTATAAATCATTTTATATTCTTCATAgcactgaa
aaataaatttaaaaaacttagtTCTTGGAGATTTGCATATTATTTAAGAA
GGATTTATATtcgtaaaaataaaatttcaactgTACTCTTTCAAACTGTA
TCgaactttttgtattttctaaaaATGCTTTCAATTAAAAGTTAATGCCA
AACATTTTATAATTCCATTTGAAAAGAGTTCCTTTTACTGTTGTCTGAGT
AAACGATGTCAAAAAATCGAGTCtccttcaaaattatttttgagcaaacc
aaaaaattgaatttttgaaaaaagatttagtcACGATAAatccggggggg
gtacttaggcaaatggagggtacggtatgtgccgtcANattgttcttaat
ttgttcttaaagattTTCTTCTGATTGTTTAAACTGATAAAAACCGTAGT
CTCAACACTGATCTGCTAATGTTAGATAAACGTTTTAGTGGTAGAATTTA
GCTCGGTATGAATACAAACCCAAGAATTTTAGTATTCCAATCCCTTTGAA
TTTCGCACTGATCGCACTTTTCTATTAAATGTGTATGACAAAGCACTTTA
AGTgcaatttatttaatttaaacTTTATAAATCATTTTATATTCTTCATA
gcactgaaaaataaatttaaaaatcttagtTCTTGGAGATTTGCATATTA
TTTAAGAAGGATTTATATtcgtaaaaataaaatttcaactgtat Run BLAST on NCBI transcript from alignment at scaffold_331:653281..656086+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059813 ID=TCONS_00059813|Name=TCONS_00059813|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at scaffold_331:653281..656086+ (Clytia hemisphaerica)
AAAAACTCATGTATGTAGATTATgtttagaaaaaaacgaaatcaaaatTC
AGACGTTTAGACTTTTAGATGAACAGCCAACTATTCTTATAGGTAAGTAA
ACTAGAGAGTTGGACAACTTTCTCATTGGAAATCAACTTGGTTAGCTCTT
GGTCGATCTTAACAAGTCACCGAGATATGAGGTGTCTAGGGCATTACATA
CAGGGTTTACACTTTTAAGCTTTTACCAACGAAAACCCCCCTTCTCACAC
ACCCGGTAGGATTTTCTCatccagtgggggtaaaaataacggactgaaac
tcagtgttgatatctttttttggctgggaatttaaattcttttgttttca
agtcagaaatttcagtgggggggggggatacGAGAAATTACATCCCTGCc
ttacagccccggtggaacttcatttgaaatgaaatattgcatcacaaaat
attttaagacaagtttttagttttcaagatatCAAAAACCTAATGAATAC
TCTCTCATTTAAGAATCCTCAAATAAACAATGAGAAAAATTCTAACCTCA
TAATTCAAAAAATAGAAACCCTGCTGTTAGTAACCAATCTTAAAAAAGGG
TACCTGTTTGAAACAGACCAATCAGAAACAAGCTATGAATAATTCAAGTT
TGAAGTGAACAGTAAAGATCCTGTTAGATATTGCTTTATTATCCATCCCT
TTCATTCATTATATTCAAAATTCACCAtggagtacacatcaaaacaaatc
taattttagaaaatgagatatcaaaaattaatcaagaagaaatttttttt
ctcactttttcgctgaatatgtaaaaaatttcaatccTTTTCTTTCGTTA
ACAGTTTGAAGTACGGGCGACAAGACTTCAAATTGATTATTAGCGAAAaa
gaacgaagaagaacaaGATAGGAAGAGGTGAGCGAGAATCAACaaagaaa
aggagaaaaagTTAATCAACAAACCAGCCATGGCAAAACATCACAAGATC
ACAGTGATCGTAGTCCTCCTCTTTACCTTTCTGTTCGCAGCATGCAATGT
CTACAAACTTTTAACACAAACTGAAGAAGACATCAAACAGTTCATGTGTC
ACCATGTCAAACATGACGACCACAAGGATATGTTACGCCGGCAGAAACAT
CACCGTACCGAAGCTGTCCGATCACACACCATCGATGAAGAAGATGAATC
ATTCGAAGACAAAGTTCGAGATGGTTTGGACAAGAAAATCAAGGAATCTC
ACTACCAGCACAAATTGAAAGCTGAGCATCGATGTCGACATCATATCACA
GTTGACCAGATCCGTGGAATGAAGTTCCTATCCAAACTTGGTATCATTTT
CTCCTTGGTATCCATTGTAGCAACATTGATCGCCTTTGGATCCATCAGAT
CTGTTGAAACACCAAATGCACGTTTCTTCTTGATCCCATACATCTTTGCA
CACACCTTGTTGATTGCTTTTGAAATCTACGCTTGCATCCGTACCCAGGA
ATTGGTCCACAAATTACCAGTCCTTTACATCGTCATGGTGGTTGTATCCT
CCATCATGCTTATCTCTTTCATTTCATTGGTCAAGATTTATTACAATGCA
TTATCCAAAGCTGGCCGCAAAGGCGGATCCGTCCCCAAAGCAAAAGAAGC
ATTTGATTACGCGATCATGCCTGAGGAAAAAGACGCATCAGAAGCCTGAA
CAATGATGATGAAAACACCAAAATAACATTGTTGCTTTTTTCCACGCCAT
TCTTAATATAAACCAGGTGCCAGTAAATTTTGGATATAAAGGGCTTTAAA
TCAGCTTTTCTTTAgctgttttttttggaatttgagAGTgtgattgttct
taatttgttcttaaagattTTCTTCTGATTGTTTAAACTGATAAAAACCG
TAGTCTCAACACTGATCTGCTAATGTTAGATAAACGTTTTAGTGGTAGAA
TTTAGCTCGGTATGAATACAAACCCAAGAATTTTAGTATTCCAATCCCTT
TGAATTTCGCACTGATCGCACTTTTCTATTAAATGTGTATGACAAAGCAC
TTTAAGTgcaatttatttaatttaaacTTTATAAATCATTTTATATTCTT
CATAgcactgaaaaataaatttaaaaaacttagtTCTTGGAGATTTGCAT
ATTATTTAAGAAGGATTTATATtcgtaaaaataaaatttcaactgTACTC
TTTCAAACTGTATCgaactttttgtattttctaaaaATGCTTTCAATTAA
AAGTTAATGCCAAACATTTTATAATTCCATTTGAAAAGAGTTCCTTTTAC
TGTTGTCTGAGTAAACGATGTCAAAAAATCGAGTCtccttcaaaattatt
tttgagcaaaccaaaaaattgaatttttgaaaaaagatttagtcACGATA
AatccggggggggtacttaggcaaatggagggtacggtatgtgccgtcAN
attgttcttaatttgttcttaaagattTTCTTCTGATTGTTTAAACTGAT
AAAAACCGTAGTCTCAACACTGATCTGCTAATGTTAGATAAACGTTTTAG
TGGTAGAATTTAGCTCGGTATGAATACAAACCCAAGAATTTTAGTATTCC
AATCCCTTTGAATTTCGCACTGATCGCACTTTTCTATTAAATGTGTATGA
CAAAGCACTTTAAGTgcaatttatttaatttaaacTTTATAAATCATTTT
ATATTCTTCATAgcactgaaaaataaatttaaaaatcttagtTCTTGGAG
ATTTGCATATTATTTAAGAAGGATTTATATtcgtaaaaataaaatttcaa
ctgtat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059813-exon-scaffold_331-1491911889:653281..653372 | TCONS_00059813-exon-scaffold_331-1491911889:653281..653372 | Clytia hemisphaerica | exon |
| TCONS_00059813-exon-scaffold_331-1510915933:653281..653372 | TCONS_00059813-exon-scaffold_331-1510915933:653281..653372 | Clytia hemisphaerica | exon |
| TCONS_00059813-exon-scaffold_331-1575043694:653281..653372 | TCONS_00059813-exon-scaffold_331-1575043694:653281..653372 | Clytia hemisphaerica | exon |
| TCONS_00059813-exon-scaffold_331-1491911889:654135..656086 | TCONS_00059813-exon-scaffold_331-1491911889:654135..656086 | Clytia hemisphaerica | exon |
| TCONS_00059813-exon-scaffold_331-1510915933:654135..656086 | TCONS_00059813-exon-scaffold_331-1510915933:654135..656086 | Clytia hemisphaerica | exon |
| TCONS_00059813-exon-scaffold_331-1575043694:654135..656086 | TCONS_00059813-exon-scaffold_331-1575043694:654135..656086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:653281..656086 + |
Blast
The following BLAST results are available for this feature:
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