TCONS_00059813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059813
Unique NameTCONS_00059813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2044

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059813 ID=TCONS_00059813|Name=TCONS_00059813|organism=Clytia hemisphaerica|type=transcript|length=2044bp
AAAAACTCATGTATGTAGATTATgtttagaaaaaaacgaaatcaaaatTC
AGACGTTTAGACTTTTAGATGAACAGCCAACTATTCTTATAGTTTGAAGT
ACGGGCGACAAGACTTCAAATTGATTATTAGCGAAAaagaacgaagaaga
acaaGATAGGAAGAGGTGAGCGAGAATCAACaaagaaaaggagaaaaagT
TAATCAACAAACCAGCCATGGCAAAACATCACAAGATCACAGTGATCGTA
GTCCTCCTCTTTACCTTTCTGTTCGCAGCATGCAATGTCTACAAACTTTT
AACACAAACTGAAGAAGACATCAAACAGTTCATGTGTCACCATGTCAAAC
ATGACGACCACAAGGATATGTTACGCCGGCAGAAACATCACCGTACCGAA
GCTGTCCGATCACACACCATCGATGAAGAAGATGAATCATTCGAAGACAA
AGTTCGAGATGGTTTGGACAAGAAAATCAAGGAATCTCACTACCAGCACA
AATTGAAAGCTGAGCATCGATGTCGACATCATATCACAGTTGACCAGATC
CGTGGAATGAAGTTCCTATCCAAACTTGGTATCATTTTCTCCTTGGTATC
CATTGTAGCAACATTGATCGCCTTTGGATCCATCAGATCTGTTGAAACAC
CAAATGCACGTTTCTTCTTGATCCCATACATCTTTGCACACACCTTGTTG
ATTGCTTTTGAAATCTACGCTTGCATCCGTACCCAGGAATTGGTCCACAA
ATTACCAGTCCTTTACATCGTCATGGTGGTTGTATCCTCCATCATGCTTA
TCTCTTTCATTTCATTGGTCAAGATTTATTACAATGCATTATCCAAAGCT
GGCCGCAAAGGCGGATCCGTCCCCAAAGCAAAAGAAGCATTTGATTACGC
GATCATGCCTGAGGAAAAAGACGCATCAGAAGCCTGAACAATGATGATGA
AAACACCAAAATAACATTGTTGCTTTTTTCCACGCCATTCTTAATATAAA
CCAGGTGCCAGTAAATTTTGGATATAAAGGGCTTTAAATCAGCTTTTCTT
TAgctgttttttttggaatttgagAGTgtgattgttcttaatttgttctt
aaagattTTCTTCTGATTGTTTAAACTGATAAAAACCGTAGTCTCAACAC
TGATCTGCTAATGTTAGATAAACGTTTTAGTGGTAGAATTTAGCTCGGTA
TGAATACAAACCCAAGAATTTTAGTATTCCAATCCCTTTGAATTTCGCAC
TGATCGCACTTTTCTATTAAATGTGTATGACAAAGCACTTTAAGTgcaat
ttatttaatttaaacTTTATAAATCATTTTATATTCTTCATAgcactgaa
aaataaatttaaaaaacttagtTCTTGGAGATTTGCATATTATTTAAGAA
GGATTTATATtcgtaaaaataaaatttcaactgTACTCTTTCAAACTGTA
TCgaactttttgtattttctaaaaATGCTTTCAATTAAAAGTTAATGCCA
AACATTTTATAATTCCATTTGAAAAGAGTTCCTTTTACTGTTGTCTGAGT
AAACGATGTCAAAAAATCGAGTCtccttcaaaattatttttgagcaaacc
aaaaaattgaatttttgaaaaaagatttagtcACGATAAatccggggggg
gtacttaggcaaatggagggtacggtatgtgccgtcANattgttcttaat
ttgttcttaaagattTTCTTCTGATTGTTTAAACTGATAAAAACCGTAGT
CTCAACACTGATCTGCTAATGTTAGATAAACGTTTTAGTGGTAGAATTTA
GCTCGGTATGAATACAAACCCAAGAATTTTAGTATTCCAATCCCTTTGAA
TTTCGCACTGATCGCACTTTTCTATTAAATGTGTATGACAAAGCACTTTA
AGTgcaatttatttaatttaaacTTTATAAATCATTTTATATTCTTCATA
gcactgaaaaataaatttaaaaatcttagtTCTTGGAGATTTGCATATTA
TTTAAGAAGGATTTATATtcgtaaaaataaaatttcaactgtat
Run BLAST on NCBI

transcript from alignment at scaffold_331:653281..656086+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059813 ID=TCONS_00059813|Name=TCONS_00059813|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at scaffold_331:653281..656086+ (Clytia hemisphaerica)
AAAAACTCATGTATGTAGATTATgtttagaaaaaaacgaaatcaaaatTC
AGACGTTTAGACTTTTAGATGAACAGCCAACTATTCTTATAGGTAAGTAA
ACTAGAGAGTTGGACAACTTTCTCATTGGAAATCAACTTGGTTAGCTCTT
GGTCGATCTTAACAAGTCACCGAGATATGAGGTGTCTAGGGCATTACATA
CAGGGTTTACACTTTTAAGCTTTTACCAACGAAAACCCCCCTTCTCACAC
ACCCGGTAGGATTTTCTCatccagtgggggtaaaaataacggactgaaac
tcagtgttgatatctttttttggctgggaatttaaattcttttgttttca
agtcagaaatttcagtgggggggggggatacGAGAAATTACATCCCTGCc
ttacagccccggtggaacttcatttgaaatgaaatattgcatcacaaaat
attttaagacaagtttttagttttcaagatatCAAAAACCTAATGAATAC
TCTCTCATTTAAGAATCCTCAAATAAACAATGAGAAAAATTCTAACCTCA
TAATTCAAAAAATAGAAACCCTGCTGTTAGTAACCAATCTTAAAAAAGGG
TACCTGTTTGAAACAGACCAATCAGAAACAAGCTATGAATAATTCAAGTT
TGAAGTGAACAGTAAAGATCCTGTTAGATATTGCTTTATTATCCATCCCT
TTCATTCATTATATTCAAAATTCACCAtggagtacacatcaaaacaaatc
taattttagaaaatgagatatcaaaaattaatcaagaagaaatttttttt
ctcactttttcgctgaatatgtaaaaaatttcaatccTTTTCTTTCGTTA
ACAGTTTGAAGTACGGGCGACAAGACTTCAAATTGATTATTAGCGAAAaa
gaacgaagaagaacaaGATAGGAAGAGGTGAGCGAGAATCAACaaagaaa
aggagaaaaagTTAATCAACAAACCAGCCATGGCAAAACATCACAAGATC
ACAGTGATCGTAGTCCTCCTCTTTACCTTTCTGTTCGCAGCATGCAATGT
CTACAAACTTTTAACACAAACTGAAGAAGACATCAAACAGTTCATGTGTC
ACCATGTCAAACATGACGACCACAAGGATATGTTACGCCGGCAGAAACAT
CACCGTACCGAAGCTGTCCGATCACACACCATCGATGAAGAAGATGAATC
ATTCGAAGACAAAGTTCGAGATGGTTTGGACAAGAAAATCAAGGAATCTC
ACTACCAGCACAAATTGAAAGCTGAGCATCGATGTCGACATCATATCACA
GTTGACCAGATCCGTGGAATGAAGTTCCTATCCAAACTTGGTATCATTTT
CTCCTTGGTATCCATTGTAGCAACATTGATCGCCTTTGGATCCATCAGAT
CTGTTGAAACACCAAATGCACGTTTCTTCTTGATCCCATACATCTTTGCA
CACACCTTGTTGATTGCTTTTGAAATCTACGCTTGCATCCGTACCCAGGA
ATTGGTCCACAAATTACCAGTCCTTTACATCGTCATGGTGGTTGTATCCT
CCATCATGCTTATCTCTTTCATTTCATTGGTCAAGATTTATTACAATGCA
TTATCCAAAGCTGGCCGCAAAGGCGGATCCGTCCCCAAAGCAAAAGAAGC
ATTTGATTACGCGATCATGCCTGAGGAAAAAGACGCATCAGAAGCCTGAA
CAATGATGATGAAAACACCAAAATAACATTGTTGCTTTTTTCCACGCCAT
TCTTAATATAAACCAGGTGCCAGTAAATTTTGGATATAAAGGGCTTTAAA
TCAGCTTTTCTTTAgctgttttttttggaatttgagAGTgtgattgttct
taatttgttcttaaagattTTCTTCTGATTGTTTAAACTGATAAAAACCG
TAGTCTCAACACTGATCTGCTAATGTTAGATAAACGTTTTAGTGGTAGAA
TTTAGCTCGGTATGAATACAAACCCAAGAATTTTAGTATTCCAATCCCTT
TGAATTTCGCACTGATCGCACTTTTCTATTAAATGTGTATGACAAAGCAC
TTTAAGTgcaatttatttaatttaaacTTTATAAATCATTTTATATTCTT
CATAgcactgaaaaataaatttaaaaaacttagtTCTTGGAGATTTGCAT
ATTATTTAAGAAGGATTTATATtcgtaaaaataaaatttcaactgTACTC
TTTCAAACTGTATCgaactttttgtattttctaaaaATGCTTTCAATTAA
AAGTTAATGCCAAACATTTTATAATTCCATTTGAAAAGAGTTCCTTTTAC
TGTTGTCTGAGTAAACGATGTCAAAAAATCGAGTCtccttcaaaattatt
tttgagcaaaccaaaaaattgaatttttgaaaaaagatttagtcACGATA
AatccggggggggtacttaggcaaatggagggtacggtatgtgccgtcAN
attgttcttaatttgttcttaaagattTTCTTCTGATTGTTTAAACTGAT
AAAAACCGTAGTCTCAACACTGATCTGCTAATGTTAGATAAACGTTTTAG
TGGTAGAATTTAGCTCGGTATGAATACAAACCCAAGAATTTTAGTATTCC
AATCCCTTTGAATTTCGCACTGATCGCACTTTTCTATTAAATGTGTATGA
CAAAGCACTTTAAGTgcaatttatttaatttaaacTTTATAAATCATTTT
ATATTCTTCATAgcactgaaaaataaatttaaaaatcttagtTCTTGGAG
ATTTGCATATTATTTAAGAAGGATTTATATtcgtaaaaataaaatttcaa
ctgtat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037626XLOC_037626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059813-exon-scaffold_331-1491911889:653281..653372TCONS_00059813-exon-scaffold_331-1491911889:653281..653372Clytia hemisphaericaexon
TCONS_00059813-exon-scaffold_331-1510915933:653281..653372TCONS_00059813-exon-scaffold_331-1510915933:653281..653372Clytia hemisphaericaexon
TCONS_00059813-exon-scaffold_331-1575043694:653281..653372TCONS_00059813-exon-scaffold_331-1575043694:653281..653372Clytia hemisphaericaexon
TCONS_00059813-exon-scaffold_331-1491911889:654135..656086TCONS_00059813-exon-scaffold_331-1491911889:654135..656086Clytia hemisphaericaexon
TCONS_00059813-exon-scaffold_331-1510915933:654135..656086TCONS_00059813-exon-scaffold_331-1510915933:654135..656086Clytia hemisphaericaexon
TCONS_00059813-exon-scaffold_331-1575043694:654135..656086TCONS_00059813-exon-scaffold_331-1575043694:654135..656086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:653281..656086 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.236103	0	1.78866	0.0140987	2.05833	1.7026	4.95775	3.90658	57.5551	70.8641	0	0	12.4611	14.1038	142.476	105.745	12.0514	17.3234	6.51498	17.8534	13.2822	24.0196	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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